BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476454 Length=1733 Score E Sequences producing significant alignments: (Bits) Value AT1G73220.1 | Symbols: AtOCT1, 1-Oct | organic cation/carnitine... 2761 0.0 > AT1G73220.1 | Symbols: AtOCT1, 1-Oct | organic cation/carnitine transporter1 | chr1:27538276-27540235 FORWARD LENGTH=1857 Length=1857 Score = 2761 bits (1495), Expect = 0.0 Identities = 1655/1734 (95%), Gaps = 3/1734 (0%) Strand=Plus/Plus Query 1 GACCATGTGTATATATACCCTCGCTAACTTAAGACATATATCAATCAAGCCCACAAGCCT 60 ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||| Sbjct 8 GACCATGTGTATATATACCATCGCTAACTTAAGACATATATCAATCAATCCCACAAACCT 67 Query 61 -AATTTAAAACAAAAATATTTCTACCTGAAACAACATAAACA-AACTGGAACCTTCAAAA 118 |||| |||||||| ||||||| ||||||||||||||||||| || |||||||||||||| Sbjct 68 AAATTGAAAACAAATATATTTCCACCTGAAACAACATAAACAGAA-TGGAACCTTCAAAA 126 Query 119 CAAGAAGTTCCAAAGCTCATGGAGACACCACCAAACATATCCAATGATTCATCAGCATCC 178 |||||||||||||||||||||||||||||||| |||||||| || |||||||||||| || Sbjct 127 CAAGAAGTTCCAAAGCTCATGGAGACACCACCGAACATATCAAACGATTCATCAGCAACC 186 Query 179 GAGAAAGGAGAAGcaacaaggcaacaacaacaaccaaacaaTAGGTACGCACTCACAGTT 238 ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 187 GAGAAAGGAGAAGCAACAAGGCAACAACAGCTACCAAACAATAGGTACGCACTCACAGTT 246 Query 239 GACGAGGTGATCGAGCAACACATTGGCGCACTTGGGTTTGCTCAGATCTTGCATGCTCTC 298 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 247 GACGAGGTGATCGAGCAACACATTGGAGCACTTGGGTTTGCTCAGATCTTGCATGCTCTC 306 Query 299 TTAGTCTCCATCGCTTGGATCTTCGATGCTCAGACCACTCTTATATCCATTTTCTCCGAC 358 || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 307 TTGGTCTCTATCGCTTGGATCTTCGATGCTCAGACCACTCTTATATCCATTTTCTCCGAT 366 Query 359 GCTCAGCCCGCTGCGAGGCTTCTTGCAACCGGTGCCATCGTGGAGGGCGCGTCGTTGTGT 418 ||||||||||| ||||||||||||||||||||||||||||||||||| || || |||||| Sbjct 367 GCTCAGCCCGCGGCGAGGCTTCTTGCAACCGGTGCCATCGTGGAGGGTGCCTCCTTGTGT 426 Query 419 GGCTTGGCCAGTGGAGAATGGGAATGGATTGGATCAAAGAGTGACACTGTTGTTTCTGAG 478 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 427 GGATTGGCCAGTGGAGAATGGGAATGGATTGGACCAAAGAGTGACACTGTTGTTTCTGAG 486 Query 479 TGGAATCTCATATGTCAACATAAGTTTCTTGTTGCTGTTCCTTCCACTCTATTCTTCATC 538 ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| Sbjct 487 TGGAATCTCATATGTCAACATAAATTTCTTGTGGCTGTTCCTTCCACACTATTCTTCATC 546 Query 539 GGATCTCTTTTCGGTTCTGGTGTTTATGGATATCTTGCTGATTCATGGTTTGGTCGAAAA 598 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 547 GGATCTCTTTTCGGTTCTGGTGTGTATGGATATCTTGCTGATTCATGGTTTGGTCGAAAG 606 Query 599 AAGACTCTGTTACTCTCTTGTGTATTAACTTTTGTCACGGCCTTCGCGATCTCTTTTTCA 658 |||||| | ||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 607 AAGACTTTATTACTCTCTTGTGTATTAACTTTCGTCACGGCCTTTGCGATCTCTTTTTCA 666 Query 659 CCAAACGTATGGGTTTACGCATTCTTGCGTTTTGCCAATGGTTTCTTTAGATCAGGAATT 718 |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 667 CCAAACGTTTGGGTTTATGCATTCTTGCGTTTTGCCAACGGTTTCTTTAGATCAGGAATT 726 Query 719 GGGTCTTGTTGTATCGTACTCGCAACTGAGATTGTTGGCAAAAAGTGGCGAGGCCAAGTA 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 727 GGGTCTTGTTGTATCGTACTCGCAACTGAGATTGTTGGCAAAAAGTGGCGAGGCCAAGTA 786 Query 779 GGGCAATACGGTTTCTTCTTCTTCACGTTAGGTTTTCTATCTCTGCCACTCATGGCTTAT 838 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 787 GGGCAATACGGTTTCTTCTTCTTCACGTTAGGTTTTCTATCTCTACCACTCATGGCTTAC 846 Query 839 TTGGAGAGAAAGTCATGGAGAAATCTTTACCGGATCATATCCTTTCTTCCTCTTGGATAC 898 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 847 TTGGAGAGAAAGTCCTGGAGAAATCTTTACCGGATCATATCCTTTCTTCCTCTTGGATAC 906 Query 899 GCGGTTTGTCTCTTGCCCTTTGCTTATGAGTCTCCTCGATGGCTTCTTGTCAAGGGACGT 958 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 907 GCGGTTTGTCTCCTGCCCTTTGCTTATGAGTCTCCTCGATGGCTTCTTGTCAAGGGACGT 966 Query 959 AACAAAGAAGCCATGGTGGTCTTGAAGAAACTCGCGAGGCTTAACGGGAAACAACTTCCG 1018 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 967 AATAAAGAAGCCATGGTGGTCTTGAAGAAACTCGCGAGGCTCAACGGGAAACAACTTCCG 1026 Query 1019 GCGGATCTAAGCCTAGTCGATCCAATTCCAGAGAGAGATGATCAAACTTCATCAGCGGAG 1078 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1027 GCGGATCTAAGCCTAGTCGATCCAATTCCAGAGAGAGATGATCAAACTTCATCATCGGAG 1086 Query 1079 AAGTTTTGGAAAACAAAATGGGCAGTAAAAAGAATCATAATGGTTATGATGGCTGGATTT 1138 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1087 AAGTTTTGGAAAACAAAATGGGCAGTGAAAAGAATCATAATGGTTATGATGGCTGGATTT 1146 Query 1139 GGCAGTGGCTTTGTTTATTATGGAATTCAACTAAATGCTGAAAATCTCAACTTCAATCTT 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1147 GGCAGTGGCTTTGTTTATTATGGAATTCAACTAAATGCTGAAAATCTCAACTTCAATCTT 1206 Query 1199 TATTTAACCGTTGCTGTTAACGCACTGATGGAGTTTCCAGCGGTTTTCATAGGAAGTTTC 1258 || ||||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||| Sbjct 1207 TACTTAACTGTTGCTGTTAACGCTCTGATGGAGTTTCCAGCGGTTTTCATCGGAAGCTTC 1266 Query 1259 CTCCTCGGGGTCATGAACCGGCGTCCACTATTCTCGAACTCATCATACCTCGCTGGAGTC 1318 |||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| || Sbjct 1267 CTCCTCGGGGTCATGAACCGCCGTCCACTATTCTCGAATTCATCATACCTCGCCGGATTC 1326 Query 1319 GCGTGTCTACTCTGCGCGGTTCTCTCTATCCACCGCGTGATCCGTGCCATATCTGTTGCG 1378 |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| || Sbjct 1327 GCGTGTCTGCTCTGCGCGGTTCTCTCGATCCACCGCGTGATCCGTGCGATATCTGTGGCA 1386 Query 1379 AAATGGTTACAACTTGCAGTTGAGGCAGTTGGATTCATGGCATCCTCGACAGCGTATGAC 1438 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1387 AAATGGTTACAACTTGCAGTTGAGGCGGTTGGGTTCATGGCATCCTCGACAGCGTATGAC 1446 Query 1439 GTCCTATATGTCTACTGTGTCGAGCTGTTCCCAACAAACGTTAGGAACACTGCTGTCTCG 1498 ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1447 GTCCTATATGTCTACTGCGTAGAGCTGTTCCCAACAAACGTTAGGAACACTGCTGTCTCA 1506 Query 1499 CTTTTGCGTCAAGCGTTTATGCTAGGAGCGTCCGCAGCACCGCTGCTAGTTGCGTTGGGA 1558 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| Sbjct 1507 CTTTTGCGTCAAGCGTTTATGCTAGGAGCGTCTGCAGCACCACTGCTAGTTGCGTTAGGA 1566 Query 1559 AGGGAAAGTGCAATGATGTCGTTTATCGTGTTTGGTGTTGCATCTGTGCTGAGCGGCGTC 1618 |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||| || Sbjct 1567 AGGGAAAGCGCAATGATGTCGTTCATCGTGTTTGGTGTTGCATCAGTGCTGAGCGGCATC 1626 Query 1619 ATGAGTCTCTGGCTACGAGAAACACGAAATGCACCGCTTTACGAAACACTAGCACAGCAG 1678 |||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||| Sbjct 1627 GTGAGTCTCTGGCTACGAGAAACTCGAAACGCTCCGCTTTACGAAACACTAGCACAACAG 1686 Query 1679 GGGAAAGCGGAAGAGATCGAAAATGAAACAATCCTGAGTACTTGATTGCATTCA 1732 ||||||||||||||||||||||| ||||||||| ||| |||||||||||||||| Sbjct 1687 GGGAAAGCGGAAGAGATCGAAAACGAAACAATCATGATTACTTGATTGCATTCA 1740 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85692330315 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5