BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476499

Length=648
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G73630.1 | Symbols:  | EF hand calcium-binding protein famil...   758    0.0  


> AT1G73630.1 | Symbols:  | EF hand calcium-binding protein family 
| chr1:27684736-27685453 FORWARD LENGTH=718
Length=718

 Score =  758 bits (410),  Expect = 0.0
 Identities = 473/503 (94%), Gaps = 6/503 (1%)
 Strand=Plus/Plus

Query  1    AAAAATGGCAAACACAAATCCTGAATCCGCTAACAAATCCACAACACCATCAACGGATAT  60
            |||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||
Sbjct  9    AAAAATGGCAAACACAAATCTTGAATCCACCAACAAATCCACAACACCATCAACGGATAT  68

Query  61   GGAGCTAAAGAAAGTCTTCGACCAA-TTCGACT-CCAACGGCGACGGGAAAATCTCAGTT  118
            ||||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||
Sbjct  69   GGAGCTAAAGAAAGTCTTCGA-CAAGTTCGA-TGCCAACGGCGACGGGAAAATCTCAGTT  126

Query  119  TCAGAGCTCGGAAACGTTTTCAAATCCATGGGAACGTCGTACACAGAGGAGGAGCTAAAC  178
            ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  127  TCAGAACTCGGAAACGTTTTCAAATCCATGGGAACGTCGTACACTGAGGAGGAGCTAAAC  186

Query  179  CGTGTGTTAGACGAAATCGACATCGATC-GTGACGGTTTCATCAATCAGGAAGAGTTCGC  237
            ||||| |||||||||||||||||||| | | ||||||||||||||||| |||||||| ||
Sbjct  187  CGTGTATTAGACGAAATCGACATCGA-CTGCGACGGTTTCATCAATCAAGAAGAGTTTGC  245

Query  238  TACCATTTGCCGATCATCTTCCTCCGCAGCAGAGATACGTGAAGCGTTCGATCTCTACGA  297
            ||||||||| ||||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct  246  TACCATTTGTCGATCATCTTCCTCCGCTGTAGAGATCCGTGAAGCGTTCGATCTCTACGA  305

Query  298  TCAGAACAAAAACGGTTTGATTTCGTCCTCTGAGATCCATAAGGTTCTTAATCGTCTTGG  357
            |||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct  306  TCAGAATAAAAACGGTTTGATTTCGTCCTCTGAGATCCATAAAGTTCTGAATCGTCTTGG  365

Query  358  TATGTCTTGCTCTGTTGAAGATTGTGTGAGAATGATCGGTCATGTTGATGCTGACGGCGA  417
            |||| ||||||||||||||||||||||||||||||| |||||||||||| |||| |||||
Sbjct  366  TATGACTTGCTCTGTTGAAGATTGTGTGAGAATGATTGGTCATGTTGATACTGATGGCGA  425

Query  418  TGGAAATGTTAATTTCGAGGAGTTTCAGAAGATGATGTCGTCGCCTGAGCTCGTTAAGGG  477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  426  TGGAAATGTTAATTTCGAGGAGTTTCAGAAGATGATGTCGTCGCCTGAGCTCGTTAAGGG  485

Query  478  ATCCGTCGCGAACACTTAGGGTT  500
            | |||| |||||| ||||| |||
Sbjct  486  AACCGTTGCGAACTCTTAGAGTT  508



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31295873581


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5