BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476521
Length=1456
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73840.1 | Symbols: ESP1 | hydroxyproline-rich glycoprotein ... 2194 0.0
> AT1G73840.1 | Symbols: ESP1 | hydroxyproline-rich glycoprotein
family protein | chr1:27763685-27766364 REVERSE LENGTH=1455
Length=1455
Score = 2194 bits (1188), Expect = 0.0
Identities = 1376/1465 (94%), Gaps = 20/1465 (1%)
Strand=Plus/Plus
Query 1 CAGGTTAATCTCGGTAGCGATTACCGACGAGAACCATGGCGGGTAAGCAGATCGGCGGAG 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 CAGGTTAAGCTCGGTAGCGATTACCGACGAGAACCATGGCGGGTAAGCAGATCGGCGGAG 61
Query 61 ATGGCGGTTTACCGGCAAATCTCGCCGGAATGACAAAAAGTCAGCTCTACGACATTATGT 120
| || ||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 62 ACGGAGGTTTACCGGCAAATCTCGCCGGAATGACTAAAAGTCAGCTCTATGATATTATGT 121
Query 121 CTCAAATGAAGACGTTGATTGATCAAAACCATCAACAAGCGAGGGAGATTCTGATTCGGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CTCAAATGAAGACGTTGATTGATCAAAACCATCAACAAGCGAGGGAGATTCTGATTCGGA 181
Query 181 ACCCTCTTTTGACCAAGGCTCTTTTCCAGGCACAAATCATGCTTGGAATGGTTCAGCCTC 240
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 182 ACCCTCTTTTGACGAAGGCTCTTTTCCAGGCACAAATCATGCTCGGAATGGTTCAGCCTC 241
Query 241 CGCAACTGACTCCCAAAGTTGAACCACAAGCTATGCAACAGCCTCAACAATCTCATCAAC 300
| ||| ||||||| |||||||| ||||||||| | ||||| ||||||||||||||||||
Sbjct 242 CTCAAGTGACTCCGAAAGTTGAGCCACAAGCTGTACAACAACCTCAACAATCTCATCAAT 301
Query 301 CTATACCTCTAAAGCCAAACGTTCAAGCTCATATGTCTTCTATT-CAAGGGGGAGGCAGT 359
|||| || | ||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct 302 CTATCCCGCCAAAGCCAAACGTTCAAGCTCATATGTCTTCT-TTCCAAGGCGGTGGCAGT 360
Query 360 GTACATGAGCCAGCAAATACGATGCAGCCACAAGCCCCGATTCGAAAACACCCAACACCA 419
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTACATGAGCCAGCCAATACGATGCAGCCACAAGCCCCGATTCGAAAACACCCAACACCA 420
Query 420 CAACCAATGCCTATGCCT---CCTCCGCCTTCTGTTTCTGCAACCAATAATGCTCAATCA 476
|||||||||||||||||| || ||||||||||||||||| | |||| ||||||||||
Sbjct 421 CAACCAATGCCTATGCCTCCACCACCGCCTTCTGTTTCTGC-A--AATAGTGCTCAATCA 477
Query 477 CAACCTCGTTTTTCGCATCCCCAGCGTCAGGGACATCTGAATCCTACTGTCACTTCTATG 536
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 478 CAGCCTCGTTTTTCGCATCCCCAGCGTCAGGGACATCTGAATCCTGCTGTCACTTCTATG 537
Query 537 TCTCATCAACAGTCTTCTCAAGTTCAAAACGCGCCTCCTCCGGCTCCCCATCATCCAACA 596
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 538 TCTCATCCACAGTCTTCTCAAGTTCAAAACGCGCCTCCTCCGGCTTCCCATCATCCAACA 597
Query 597 TCCCAGCCACCTCCTTTTCATCATCTTGATATACCAGCTTCCTCCACTCAGTTGCAGCAA 656
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 598 TCCCAGCAACCTCCTTTTCATCATCTTGATATACCAGCTTCCTCCACTCAGTTGCAACAA 657
Query 657 CAACCAATGCACTCGGGTGGAGGTCCTCATTTGGCACAGCAACAGCCTAGACCATATCAT 716
|||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 658 CAACCAATGCACTCTGGTGGAGGTCCTCATGTGGCACAGCAACAGTCTAGACCATATCAT 717
Query 717 CATCAATATGGACAAGCCCAAACTGGTCCAAACACTGGGTTTCAGCACCATGGCACACCT 776
||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||
Sbjct 718 CATCAATATGGACAAGCTCAAACTGGTCCAAACACTGGATTTCAGCACCATGGCGCACCT 777
Query 777 CCTCAGCATCTTTCTCAACCCATGTTTCATTCAGGCAACAGACCCCCTGCTGCTGGTGTA 836
|||||||||||||||||||||||| ||||||||||||||||||||||||| | |||| |
Sbjct 778 ACTCAGCATCTTTCTCAACCCATGTATCATTCAGGCAACAGACCCCCTGCTTCCGGTGGA 837
Query 837 CCTCAATTCCCGCAGGGACAGCAACATCTGCCTAGTCAGCCAACATATCAGGGAGGAGGT 896
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 838 CCTCAATTCCCGCAGGGACAGCCACATCTGCCTAGTCAGCCAACATATCAGGGAGGAGGT 897
Query 897 CAATATCGTGGAGACTACAACAATAACCAATTAGCAGGTCTGATGGCTCAAGACAGAGGT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CAATATCGTGGAGACTACAACAATAACCAATTAGCAGGTCTGATGGCTCAAGACAGAGGT 957
Query 957 CCTTCTTGGATGGCTGGCCAATCAGAGAGCTCAAACATTACTCATCTCCCAGGTTTAGGA 1016
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 958 CCTTCTTGGATGGCTGGCCAATCAGAGAGCTCGAACATTACTCATCTGCCAGGCTTAGGA 1017
Query 1017 CCGGTGCCTCCACCAAGCCAAGTTGGGCCTGGAGGTGGCCCACCACCTCGCCCTGCACCG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CCGGTGCCTCCACCAAGCCAAGTTGGGCCTGGAGGTGGCCCACCACCTCGCCCTGCACCG 1077
Query 1077 ATATCTGCAGAGATGGAGAAGGCATTACTTCAACAGGTGATGAGCCTAACGCCAGAGCAG 1136
|||||||||||||||||||||||| |||||||||| ||||||||||| || |||||||||
Sbjct 1078 ATATCTGCAGAGATGGAGAAGGCACTACTTCAACAAGTGATGAGCCTTACACCAGAGCAG 1137
Query 1137 ATCAATCTGCTGCCACCAGAACAGAGAAACCAAGTCCTTCAGCTTCAACAGATTCTCCGA 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATCAATCTGCTGCCACCAGAACAGAGAAACCAAGTCCTTCAGCTTCAACAGATTCTCCGA 1197
Query 1197 CAGTGAAGCTCATTGATATGATCGCTTGGTCTCC---ATGTTAGAACATTAGAAGAAACA 1253
||||||| ||||| |||| |||||||||||||| |||||||||| || ||||| |||
Sbjct 1198 CAGTGAATCTCATAGATA--ATCGCTTGGTCTCCTCCATGTTAGAACTTT-GAAGAGACA 1254
Query 1254 GGTTTTGGCTTTGAATGTAAT-CG-GAGTTAAGTTTGGGATAATTTGTaaaaagaaaaaa 1311
|||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||
Sbjct 1255 GGTTTTGGCTTTGAATGTAAGGCCTGAGTTAAGTTTGGGATAATTTGTAAAAAGAAGAAA 1314
Query 1312 aaaaGTAATTAGATGTTTTCCAAAGTTCAAGGTGTCACTTAATACTTTTGGTCATATCCC 1371
| |||||||||| ||||| |||||||||||| ||||| ||||| ||||||||||||||
Sbjct 1315 A---GTAATTAGATTTTTTC-AAAGTTCAAGGTATCACTAAATACCTTTGGTCATATCCC 1370
Query 1372 CTGGAGAAAATTCATGTGTTCTCTTTGATTTAATGTTCGGTAACAAtttttttCCTGCCT 1431
|||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 1371 CTGGAGAAAATTTATGTGTTCTCTTTGATTTAATGTTCAGTAACAATTTTCTTCCTGAAT 1430
Query 1432 TTCAAAGTTCCGATGTCTTGTTTAC 1456
||||||||| ||| ||||| ||||
Sbjct 1431 TTCAAAGTTACGAAATCTTGCTTAC 1455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71786779350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5