BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476539
Length=2085
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73990.1 | Symbols: SPPA, SPPA1 | signal peptide peptidase |... 3482 0.0
> AT1G73990.1 | Symbols: SPPA, SPPA1 | signal peptide peptidase
| chr1:27824433-27828926 FORWARD LENGTH=2185
Length=2185
Score = 3482 bits (1885), Expect = 0.0
Identities = 2021/2088 (97%), Gaps = 3/2088 (0%)
Strand=Plus/Plus
Query 1 GAGAGAGAGAAACAATGGCGAAGCTACTTCTTCTTCACGCGCCTCATGTAATACCTAGGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 GAGAGAGAGAAACAATGGCGAAGCTACTTCTTCTTCACGCGCCTCATGTAATACCTAGGT 78
Query 61 TTAGCAGCAGTAGTAG--G-TCACTGGTCTCAGCAGCGGCTTTATACCGAAGACCTCTCC 117
|||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 79 TTAGCAGCAGTAGTAGTAGATCACTGGTCTCCGCAGCGGCTTTATACAGAAGACCTCTCC 138
Query 118 TCGTGAATCCCCAATTTTCCCATATCGGACCTCGTCTTCGCTCTCCGTACAATCGGCGAT 177
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 139 TCGTGAATCCCCAATTTTCCCATATCGGACCTCGTCTTCATTCTCCGTACAATCGGAGAT 198
Query 178 TCTCGGCTCGTGCCTTCGACGATTCACCTGCTTCCTCGACGGAGATGGAGAAAGAGAAGC 237
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 199 TCTCGGCTCGAGCCTTCGACGATTCACCTGCTTCCTCGGCGGAGATGGAGAAAGAGAAAC 258
Query 238 AGGAACAGCTGCTGGATGGAGTTTCTGGGAAAAAAGATGAGGACTATCCGACCGGAGAAA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 AGGAACAGCTGCTGGATGGAGTTTCTGGGAAAAAAGATGAGGACTATCCGACCGGAGAAA 318
Query 298 TGGAGTATGAGAATAGGAACGCGTGGGAGATTTTTGTTGTGAAGTTGCGGATGTTATTTG 357
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 319 TGGAGTATGAGAATAGGAACGCGTGGGAGATTTTTGTTGTGAAGTTTCGGATGTTATTTG 378
Query 358 CTTATCCATGGCAGCGCGTTCGCAAGGGAAGCGTCTTGACCATGACATTGCGCGGCCAGA 417
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 379 CTTATCCATGGCAGCGTGTTCGTAAGGGAAGCGTCTTGACCATGACATTGCGCGGCCAGA 438
Query 418 TCTCTGATCAGCTAAAGAGCCGTTTCAATTCTGGGCTTTCTCTGCCTCAACTCTCAGAAA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 TCTCTGATCAGCTAAAGAGCCGTTTCAATTCTGGGCTTTCTCTGCCTCAACTCTCAGAAA 498
Query 478 ATTTTGTGAAAGCGGCATATGATCCTCGTATAGCTGGAGTCTACCTTCACATTGATCCTT 537
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 499 ATTTTGTGAAAGCGGCATATGATCCTCGTATTGCTGGAGTCTACCTTCACATTGATCCTT 558
Query 538 TGAGTTGTGGGTGGGGAAAGGTTGAAGAACTTCGAAGGCATATATTGGATTTTAAGAAAT 597
||||||||||||||||||||||||||||| || |||||||||| ||| ||||||||||||
Sbjct 559 TGAGTTGTGGGTGGGGAAAGGTTGAAGAAATTAGAAGGCATATCTTGAATTTTAAGAAAT 618
Query 598 CAGGTAAATTCATTGTTGGATATATCAGCATTTGTGGACTAAAGGAATTTTATCTTGGAT 657
||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||
Sbjct 619 CAGGTAAATTCATTGTTGGATATATCAGCATTTGTGGGCTAAAGGAGTACTATCTTGGAT 678
Query 658 GTGCATGCAACGAGCTCTATGCCCCACCTTGTGCCTATTCCTTTCTGTATGGTTTGACTG 717
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 679 GTGCATGCAACGAGCTCTTTGCCCCACCTAGTGCCTATTCCTTTCTGTATGGTTTGACTG 738
Query 718 TTCAAGCATCTTTTCTTGGAGGTGTCTTCGAGAAAGTGGGGATTGAACCTCAAGTACAAA 777
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 739 TTCAAGCATCTTTTCTTGGCGGTGTCTTCGAAAAAGTGGGGATTGAACCTCAAGTACAAA 798
Query 778 GGATTGGAAAATACAAAAGTGCTGGAGATCAGCTTTCCCGAAAAAATATATCTGAGGAAA 837
||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||
Sbjct 799 GGATTGGAAAATACAAAAGTGCTGGAGATCAGCTTTCTCGCAAAAGTATATCTGAGGAAA 858
Query 838 ATTATGAGATGCTGAGTGTGCTTCTTGATAACATATATGCAAATTGGCTGGATGGTGTTT 897
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 859 ATTATGAGATGCTGAGTGTGCTTCTTGATAACATATATTCAAATTGGCTGGATGGTGTTT 918
Query 898 CTGACTCAACAGGAAAAAAGCGAGAAGATGTTGAAAATTTCATCAATCAAGGAGTTTACG 957
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 CTGACGCAACAGGGAAAAAGCGAGAAGATGTTGAAAATTTCATCAATCAAGGAGTTTACG 978
Query 958 AAATCGAAAAGCTAAAGGAAGAGGGGCTGATAAAGGATATTCGATATGATGATGAGGTTA 1017
||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 979 AAATCGAAAAGCTCAAGGAAGCGGGGCTGATAAAGGATATTCGCTATGATGATGAGGTTA 1038
Query 1018 TAGCGATGCTGAAAGAGAGGCTTGGAGTCGAAAAAGACAAAAAGCTTCCTACTGTTGATT 1077
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1039 TAACGATGCTGAAAGAGAGGCTTGGAGTCGAGAAAGACAAAAAGCTTCCTACTGTTGATT 1098
Query 1078 ACAAGAAATACTCAGGTGTTAAGAAGTGGACTCTTGGTCTAAGTGGCGGTCGAGACCAAA 1137
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1099 ACAAGAAATACTCAGGTGTTAAGAAGTGGACTCTTGGTCTAACTGGCGGCCGAGACCAAA 1158
Query 1138 TAGCTATTATTAGAGCAGGGGGAAGCATTTCTCGGGTTAAGGGTCCGCTAAGCACTCCTG 1197
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1159 TAGCTATTATTAGAGCAGGGGGAAGCATTTCTCGGGTTAAGGGTCCATTAAGCACTCCTG 1218
Query 1198 GTTCAGCTATCATAGCAGAACAACTAATTGAGAAGATCCGCAGTGTTAGAGAGTCCAAAA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 GTTCAGCTATCATAGCAGAACAACTAATTGAGAAGATCCGCAGTGTTAGAGAGTCCAAAA 1278
Query 1258 AATATAAGGCTGCCATCATCCGAATTGACAGTCCAGGAGGCGATGCTCTCGCTTCTGATT 1317
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1279 AATATAAGGCTGCCATCATCCGAATTGACAGTCCAGGAGGTGATGCTCTCGCTTCTGATT 1338
Query 1318 TAATGTGGAGGGAGATCAAACTACTGGCTGaaaaaaaaCCTGTCATCGCGTCAATGTCAG 1377
||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||
Sbjct 1339 TAATGTGGAGGGAGATCAAACTACTGGCTGAAACAAAACCCGTCATTGCGTCAATGTCAG 1398
Query 1378 ATGTGGCAGCAAGTGGAGGCTACTACATGGCAATGGCTGCAAACACCATTGTTGCTGAAA 1437
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1399 ATGTGGCAGCAAGTGGAGGCTACTACATGGCAATGGCTGCAAACGCCATTGTTGCTGAAA 1458
Query 1438 ATTTGACATTAACTGGCTCAATTGGAGTTGTCACAGCAAGATTTACCTTGGCCAAACTAT 1497
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1459 ATTTGACATTAACTGGCTCAATTGGAGTTGTCACTGCAAGATTTACCTTGGCCAAACTAT 1518
Query 1498 ATGAAAAGATTGGCTTCAACAAGGAAACTATATCTAGAGGAAAATATGCTGAGCTTCTGG 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 ATGAAAAGATTGGCTTCAACAAGGAAACTATATCTAGAGGAAAATATGCTGAGCTTCTGG 1578
Query 1558 GGGCTGAGGAAAGACCTTTTAAGCCAGAGGAAGCAGAACTGTTTGAGAAGTCTGCACGGC 1617
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1579 GGGCTGAGGAAAGACCTTTAAAGCCAGAGGAAGCAGAACTGTTTGAGAAGTCTGCACAGC 1638
Query 1618 ATGCATACCAGCTTTTCCGAGATAAAGCAGCCTTATCAAGATCGATGCCTGTCGACAAGA 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1639 ATGCATACCAGCTTTTCCGAGATAAAGCAGCCTTATCAAGATCGATGCCTGTCGACAAGA 1698
Query 1678 TGGAAGAAGTTGCACAAGGCAGAGTCTGGACCGGTAGGGATGCTCATTCTCGTGGTCTAG 1737
|||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1699 TGGAAGAAGTTGCACAGGGCAGAGTGTGGACCGGTAAGGATGCTCATTCTCGTGGTCTAA 1758
Query 1738 TAGATGCTCTCGGCGGGCTGTCCCGAGCTATAGCAATCGCTAAGCAGAAAGCTAATATTC 1797
|||||||| |||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1759 TAGATGCTGTCGGTGGGCTGTCCCGAGCTATAGCCATTGCTAAGCAGAAAGCTAATATTC 1818
Query 1798 CTCTTAATAAGAAGGTAACTCTTGTTGAGCTTTCAAGACCTTCTACATCACTACCAGATA 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1819 CTCTTAATAAGAAGGTAACTCTTGTTGAGCTTTCAAGACCTTCTACATCACTACCAGATA 1878
Query 1858 TCTTGAGCGGTATAGGAAGCTCGGTGATTGGAGTTGACAGAACATTAAAAGAACTGCTCG 1917
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1879 TCTTAAGCGGTATAGGAAGCTCGGTGATTGGAGTTGACAGAACATTAAAAGGACTGCTCG 1938
Query 1918 ATGAATTAACAATCACCGAGGGAGTTCAAGCTCGAATGGACGGGATCATGTTTCAGCAAC 1977
| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1939 ACGAATTAACAATCACCGAGGGAGTTCAAGCTCGTATGGACGGAATCATGTTTCAGCAAC 1998
Query 1978 TTGGCCGAGATTCTTTAGCAACTCCCATCATTGATTTGCTTAAAGATTACCTCAGCTCTC 2037
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1999 TTGGCCGAGATTCTTTAGCAACTCCCATCATTGATATGCTTAAAGATTACCTCAGCTCTC 2058
Query 2038 TCCGATGATTCCGACACTATTACAGAATCTCATTTGAATGAAACTAAA 2085
|| |||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 2059 TCAGATGATTCCGACACTAGTACTGAATCTCATTTGAATGAAACTAAA 2106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103362922155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5