BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476549
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74070.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-... 1746 0.0
> AT1G74070.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans
isomerase family protein | chr1:27851488-27852976 REVERSE
LENGTH=1330
Length=1330
Score = 1746 bits (945), Expect = 0.0
Identities = 1138/1228 (93%), Gaps = 25/1228 (2%)
Strand=Plus/Plus
Query 1 ACGTTTGTGTGACATGAAATGGGTGAACGGCTAACTTTCGATTCCTTATCCACGAAATCT 60
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1 ACGTTTGTGTGACATGAAAT--G-AAACGGCTAACTTTCGATTCCTTATCCACGAAATCT 57
Query 61 AG-TAATTATCTATCTTCCTCCACCAATGA-GACACAGATTCA-TATTCATCAGGTAGAC 117
|| ||||||||||||| ||||||||||||| ||||| | || | ||||||||||||||
Sbjct 58 AGTTAATTATCTATCTCCCTCCACCAATGATGACAC--A--CAGT-TTCATCAGGTAGAC 112
Query 118 AAAATGATGCTACCACCCAATGCAAAACTTTTGTCCTCATCCGCAAAATTTCTACCGTCG 177
|||||||||| | |||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 113 AAAATGATGC-A--ACCCAATGCAAAACTTTTGTCCCCATCCGCTAAATTTCTACCGTCA 169
Query 178 CCTGTAGAGCCACCGCAACACAGCCGTAGAATCGCCGGAGGAGC-CTCTCCGTCGTTGGA 236
||| |||||||||||||||||| |||||||| | ||| |||||| | ||||||| |||||
Sbjct 170 CCTATAGAGCCACCGCAACACAACCGTAGAACCACCGTAGGAGCAC-CTCCGTCATTGGA 228
Query 237 ACGAAACTGCAAATTATCGCGACGGAATCTAAGTAAATCCTCGTTGCTTCTACTCCTTAC 296
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 229 ACGAAACTGCAAATTATCGCGACGGAATCTTAGTAAATCCTCGTTGCTTCTACTCCTCAC 288
Query 297 TACTCAAACAACTCTGACGCCATTGCTCGACTTCTCTAAAGCTCAAGCAGATACAATTGA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 CACTCAAACAACTCTGACGCCATTGCTCGACTTCTCTAAAGCTCAAGCAGATACAATTGC 348
Query 357 TAATCCTAATCCCACAAATTGCGAAAACAGAATTCCGACTAAGAAAGCGTTCATCGACGT 416
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TAACCCTAATCTCACAAATTGCGAAAACAGAATTCCGACTAAGAAAGCGTTCATCGACGT 408
Query 417 ATCGATCGACGGAGAACCAATCGGAAGGATCGTAATCGGATTATACGGAGACGATGTGCC 476
|| |||||||| ||||||||||| |||||| ||||||||||||||||||||||||| ||
Sbjct 409 GTCAATCGACGGCGAACCAATCGGGAGGATCATAATCGGATTATACGGAGACGATGTACC 468
Query 477 GGCGGGAACAGCTAGGTTCAGCAGCATTGTAAGCGGGAAAGCCGGAATAAGTTACCGGAG 536
||||||||||||||| ||||| |||||||||||||||||||| ||||| | |||||||||
Sbjct 469 GGCGGGAACAGCTAGATTCAGTAGCATTGTAAGCGGGAAAGCTGGAATTACTTACCGGAG 528
Query 537 AAAAGATTTTGTGAAGATCATGCCAGGTTATGTCCAACACGGCGGAATTAGATCGTACGG 596
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AAAAGATTTTGTGAAGATTATGCCAGGTTATGTCCAACACGGCGGAATTAGATCGTACGG 588
Query 597 AGTCGACGCCGAGCGAGCCACCGCCGCGGTCGGGAGTCTTCAAAACCTAATTGAagagtg 656
||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 589 TGTCGATGCCGAGCGTGCCACCGCCGCGGTGGGGAGTCTCCAAAACCTAATTGAAGAGTG 648
Query 657 ggagagagggaagagaggagagaTATGCAATGTAAATAAGGCGGGAAGTGTTGGAATCGT 716
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 649 GGAGAGAGGGAAGAGAGGAGAGATATGTAATGTAAATAAGGCGGGAAGCGTTGGAATCGT 708
Query 717 GGTGAGAGATCCGTCGAAGCCGCCGCCGAAGACGAAGCTTGTGGCGAGGAATGGGAAGCT 776
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 709 GGTGAGAGATCCGTCGAAACCGCCGCCGAAGACGAAGCTTGTGGCAAGGAATGGGAAGCT 768
Query 777 TCAGGTGGAAGAAGAGGTTATAGCCGTAGGACCGAACGGAACGGAGTTTGTTATAACTGC 836
| ||| ||||||||||| || || || || || ||||||||||||||||||||||| ||
Sbjct 769 TGTGGTCGAAGAAGAGGTAATTGCGGTGGGGCCAAACGGAACGGAGTTTGTTATAACGGC 828
Query 837 GGTTGATTCGCCGGAGCTGGAGGATTCGGTTTTGGTGATTGGGAAGGTTTTGGAAGGAAT 896
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 829 GGTTGATTCGCCGGAGCTGGAGGATTCGGTTTTGGTGATTGGGAAAGTTTTGGAAGGAAT 888
Query 897 GGGAGTTGTGGAGAAGATGAGACAAGTGAAGACTGTTAGGGATAACACTTCATCTCCTTA 956
||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 889 GGGAGTTGTTGAGAAGATGAGAGAAGTGAAGACTGTGAGGGATAACACTTCATCTCCTTA 948
Query 957 TTTCAGAGTGGCTAAAGTGATCGGAGATAAGAGAGCTGTGGTGGCGGAGAGAGGGTTTAA 1016
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TTTCAGGGTGGCTAAAGTGATCGGAGATAAGAGAGCTGTGGTGGCGGAGAGAGGGTTTAA 1008
Query 1017 TCGGCCTTATTCTAAGGTTGTAGTCACCAATTGTGGTTTGATCGAGTCACAAACTCTATG 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 CCGGCCTTATTCTAAGGTTGTAGTCACCAATTGTGGTTTGATCGAGTCACAAACTCTATG 1068
Query 1077 AATGAGCTCAC-GTTTGTTGGCAACGttttttttttGGTGTAACAA-ACAGCTTCAACTG 1134
|||||||||| |||||||||||||||||||| | || | | ||| ||| ||| |||||
Sbjct 1069 AATGAGCTCATTGTTTGTTGGCAACGTTTTTTGTGTGCTATG-CAAGACAACTTAAACTG 1127
Query 1135 TTTAGCACATCAACCACATGGAAAAGATTGCAGCCATGGTGATGGTGGTTTGTGGAACTA 1194
|| ||||||||||||||||||||| |||||||||||||||| | | || |||||||||
Sbjct 1128 TTAAGCACATCAACCACATGGAAA-GATTGCAGCCATGGTG--G-T--TTGGTGGAACTA 1181
Query 1195 CATTATCAATTGAGAAATTATAAGCGTG 1222
|||||||||||||| |||||||||||||
Sbjct 1182 CATTATCAATTGAGTAATTATAAGCGTG 1209
Score = 99.0 bits (53), Expect = 1e-19
Identities = 60/63 (95%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 1223 GCTTGGGCCTTAACTGGATATTAAAGAGT-TGAATAAACAAATTCTACTATTTCTATTTG 1281
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||
Sbjct 1269 GCTTGGGCCTTAACTGGATATTAAAGAGTGT-AATAAACAATTTCTACTATTTCTATTTG 1327
Query 1282 CCC 1284
|||
Sbjct 1328 CCC 1330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63152285610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5