BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476579
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74450.1 | Symbols: | Protein of unknown function (DUF793) ... 1993 0.0
AT1G18740.1 | Symbols: | Protein of unknown function (DUF793) ... 466 3e-130
> AT1G74450.1 | Symbols: | Protein of unknown function (DUF793)
| chr1:27982509-27984280 FORWARD LENGTH=1772
Length=1772
Score = 1993 bits (1079), Expect = 0.0
Identities = 1310/1416 (93%), Gaps = 38/1416 (3%)
Strand=Plus/Plus
Query 1 aaaaaaaTAA-AGACGCGGTCAAAATTCTCTCTCAA-T-TATCAATATAAAGCCAATCCC 57
||||||| || ||||||||||||||||||||||||| | ||||||||||||| ||||| |
Sbjct 18 AAAAAAA-AATAGACGCGGTCAAAATTCTCTCTCAATTCTATCAATATAAAGACAATCTC 76
Query 58 ATTCCCATTAGGGTTTTTAATTTT--T-ATCATCATCACTCTCTCTGCTCCCAAAATCAG 114
||| ||||||||||||||||||| | ||||||||||||||||||||||||||| ||||
Sbjct 77 TTTCTCATTAGGGTTTTTAATTTTCATCATCATCATCACTCTCTCTGCTCCCAAATTCAG 136
Query 115 ----aaa--aa--a-----aTTTCCGGGGAATGAGAAATTTCTCTCGAATTTGAT---T- 157
||| || | |||||||| ||||||||| ||||||||||||||||| |
Sbjct 137 AAAAAAAGGAACGATTTTTATTTCCGGTGAATGAGAATTTTCTCTCGAATTTGATCGATC 196
Query 158 ---TA--TCA-C-----ATTTTGATTTTGAGGATGCCAGCAACGGATTATCAAAGATCAT 206
|| ||| | |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 197 ACATATTTCATCTGTGTGTTTTCATTTTGAGGATGCCAGCAACGGAATATCAAAGATCAT 256
Query 207 TCGGGAGGTCTTTTCTCAATTTACGTCGAGACACGGCGGTAAACTCGGTTGACTCAACGG 266
|||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 257 TCGGGAGGTCTTTTCTGAATTTACGGCGAGACACGGCGGTGAACTCGGTTGAGTCAACGA 316
Query 267 CAGTTACCGTCGAGTTGACTCAGATGGAAGCAGAGCTTGATTCGTTTCAGAGAAAAGTTG 326
| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 317 CGGTTACCCCCGAGTTGACTCAGATGGAAGCAGAGCTTGTTTCGTTTCAGAGAAAAGTTG 376
Query 327 CTGAGAGGTTTATCGATCTCAATGCCTCTAGTTGTGAAGATCTACTGTCTCTTGAATGGG 386
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 377 CTGAGAGGTTTATCGATCTCAATGCGTCTAGTTGTGAAGATCTACTGTCTCTCGAATGGG 436
Query 387 TTGGGAAGCTTCTTGATTCGTTTTTGTCTTGTCAAGAAGAGTTTCGTGCCATCGTCATCA 446
||||||||||||||||||||||| | ||||||||||||||||||||| |||| |||||||
Sbjct 437 TTGGGAAGCTTCTTGATTCGTTTCTATCTTGTCAAGAAGAGTTTCGTTCCATAGTCATCA 496
Query 447 ACCATCGTTCGATGATTACTAAACCACCGGCGGATCGATTGATTGCAGATTACTTCGAGA 506
| ||||||||||||||||||||||||||| |||||||||| || |||||||||||||||
Sbjct 497 ATCATCGTTCGATGATTACTAAACCACCGATGGATCGATTGGTTTCAGATTACTTCGAGA 556
Query 507 GAAGTGTTAAAGCTCTTGATGTTTGTAACGCGATTCGTGATGGTGTTGAACAGATCCGTC 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 GAAGTGTTAAAGCTCTTGATGTTTGTAACGCGATTCGTGATGGTGTTGAACAGATCCGTC 616
Query 567 AATGGCAGAAACTAATCGAAATCGTAATCTGTGCTTTCAACAACAACGGTGGAGGAAGTA 626
||||||||||||| ||||| || ||||| ||||||||||||||||| || ||||||||||
Sbjct 617 AATGGCAGAAACTTATCGAGATTGTAATTTGTGCTTTCAACAACAATGGAGGAGGAAGTA 676
Query 627 GTAGTAGCCAGAGACCTCTTGGAGAAGGTCAGTTTCGTCGTGCGAGGAAGACTTTGATTG 686
|| | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 GT-G--GCAAGAGACCTCTTGGAGAAGGTCAGTTTCGTCGTGCGAGGAAGACTTTGATTG 733
Query 687 AGTTAGCAATTGGTATGCTTGATGAGAAGGATTCATCTTCAAGCTCAGTGTCGTCGCAGC 746
||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 734 AGTTAGCTATTGGTATGCTTGATGAGAAGGATTCATCTTCTAGCTCAGTGTCGTCTCAGC 793
Query 747 ATCGTAACCGGTCTTTTGGAAGGAACAAGGAGCATCTTCATCACCGAACAATCGGGCATT 806
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 794 ATCGTAACCGGTCTTTTGGAAGGAACAAGGAGCAGCTTCATCACCGAACAATCGGGCATT 853
Query 807 TCAGGTCGCTTTCTTGGAGTGTTTCAAGATCATGGTCTGCTTCTAAGCAATTACAAGCTA 866
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 854 TCAGGTCGCTTTCTTGGAGTGTTTCGAGATCATGGTCTGCTTCTAAGCAACTACAAGCTA 913
Query 867 TTGGGAACAATTTAGCTACGCCTCGAGCTAGTGACATTACTGCAACTAATGGTCTTGTTG 926
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 914 TTGGAAACAACTTAGCTACGCCTCGAGCTAGTGACATTACTGCAACTAATGGTCTTATTG 973
Query 927 TTCCGGTTTATACGATGACTTCGATATTGTTGTTTGTGATGTGGGCGCTTGTGGCAGCGA 986
||||||||||||| |||||| || |||||||||||||||||||||| ||||| || ||||
Sbjct 974 TTCCGGTTTATACAATGACTACGGTATTGTTGTTTGTGATGTGGGCACTTGTAGCTGCGA 1033
Query 987 TTCCTTGTCAAGACAGAGGCTTGCAAGTGCATTTCAATGTTCCTAGGAATTACCAATGGG 1046
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1034 TTCCTTGTCAAGACAGAGGTTTGCAAGTACATTTCAATGTTCCTAGGAATTACCAATGGG 1093
Query 1047 GAGGTTCGTTGATGTCGTTGCACGATAGGATTATTGAGGAATCGAAGAAGCGTGAGAGGA 1106
||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 1094 GAGGTTCGTTGATGTCGTTGCACGATAGGATCATTGAGGAATCGAAGAAGAGAGAGAGGA 1153
Query 1107 AGAACACTTGTGGGTTGTTGAAAGAGATACATCAGTTTGAGAGGAGTTCAAGATTGATGA 1166
|||| || |||||||||||||||||||| ||||||||||||| || ||||||||||||||
Sbjct 1154 AGAATACATGTGGGTTGTTGAAAGAGATTCATCAGTTTGAGAAGACTTCAAGATTGATGA 1213
Query 1167 ATGAGTTGGTTGATTCTGTTCAGTTTCCTTTGTCTGATGAGAAAGAGATGGAAGTGAGAG 1226
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1214 ATGAGTTGGTTGATTCTGTTCAGTTTCCTTTGTCTGAAGAGAAAGAGATGGAAGTGAGAG 1273
Query 1227 AGAGGGTTGAGGAATTGGGGAAGCTTCAAGAAGCTTTGAAGAATGGTTTGGATCCGTTTG 1286
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1274 AGAGAGTTGAGGAATTGGGGAAGCTTCAAGAGGCTTTGAAGAATGGTTTGGATCCGTTTG 1333
Query 1287 AGAGGAAAGTGAGGGAAGTGTTTCATCGGATTGTTCGAAGCAGAACAGAAGGTCTTGATA 1346
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1334 AGAGGAAAGTGAGGGAAGTGTTTCATCGGATTGTAAGAAGCAGAACAGAAGGTCTTGATA 1393
Query 1347 CTGTTGGAAAGCATCACGGTTCTGAATGATGTTTAT 1382
|||||||||||||||| |||||||||||||||||||
Sbjct 1394 CTGTTGGAAAGCATCATGGTTCTGAATGATGTTTAT 1429
> AT1G18740.1 | Symbols: | Protein of unknown function (DUF793)
| chr1:6463922-6465476 FORWARD LENGTH=1555
Length=1555
Score = 466 bits (252), Expect = 3e-130
Identities = 913/1216 (75%), Gaps = 109/1216 (9%)
Strand=Plus/Plus
Query 171 TTTTGAGGATGCCAGCAACGGATTATCAAAGATCATTCGGGAGGTCTTTTCTCAA-TTTA 229
|||||||||||||||| ||||||| |||| ||||||| || ||||| || || || ||||
Sbjct 196 TTTTGAGGATGCCAGCTACGGATTTTCAAGGATCATTTGGAAGGTCGTTGCT-AAGTTTA 254
Query 230 CGTCGAGA-CACGGCG-GTAAAC-TCGGTTGACTCAACGGCAGT--TA--C-CGTCGAGT 281
|| ||||| || | | | | | | || | ||| ||| ||| || | | ||||
Sbjct 255 CGGCGAGACCAAGTTGACTCATCAACAGTCGTCTC--CGGAAGTAGTAGCCACCACGAG- 311
Query 282 TGACTCA-GATGGAAGCAGAGCTTGATTCGTTTCAGAGAAAAGTTGCTGAGAGGTTTATC 340
| || ||||| | ||||| ||||||||||| ||| |||| ||||||| || |||
Sbjct 312 CCAAGCACCATGGAGGTTGAGCTAGATTCGTTTCAAAGACAAGTCGCTGAGAAATTCATC 371
Query 341 GATCTCAATGCCTCTAGTTGTGAA-GATCTACTGTCTCTTGAATGGGTTGGGAAGCTTCT 399
|||||||| | || | || || || || || ||||| |||||| | || ||||||||
Sbjct 372 GATCTCAACG-CT-T-CTT-CAAACGACCTTCTCTCTCTCGAATGGATCGGAAAGCTTCT 427
Query 400 TGATTCGTTT-TTGTCTTGTCAAGAAGAGTTTCGTGCCATCGTCA-TCAACCATCG-T-T 455
|||||| ||| | | |||||||||||||||||| || ||||| | ||||||| || | |
Sbjct 428 TGATTC-TTTCCTCTGTTGTCAAGAAGAGTTTCGAGCTATCGT-ATTCAACCACCGATCT 485
Query 456 CGATGAT-TACTAAACCACCGGCGGATCGATTGATTGCAGATTACTTCGAGA-GAAGTGT 513
| | ||| | ||||| | ||| ||| || |||||| ||||||||||||| | | || |
Sbjct 486 C-A-GATCT-CTAAATCTCCGATGGACCGTTTGATTTCAGATTACTTCGA-ACGGAGCAT 541
Query 514 TAAAGCTCTTGATGTTTGTAACGCGATTCGTGATGGTGTTGAACAGATCCGTCAATGGCA 573
|||||||| ||||| |||||||| || || || ||| | |||||||||||||||||| |
Sbjct 542 CAAAGCTCTAGATGTCTGTAACGCCATCCGCGACGGTATCGAACAGATCCGTCAATGGGA 601
Query 574 GAAACTAATCGAAATCGTAATCTGTGCTTTCAACAACAACGGTGGAGGAAGTAGTAGTAG 633
|||||| ||| || || |||| ||| || | | | | |||| |
Sbjct 602 GAAACTTGCCGATATTGTGATCTCTGC-TT------------T--A-G-A-TAGT--CA- 640
Query 634 CCAGAGACCTCTTGGAGAAGGTCAGTTTCGTCGTGC-GAGGAAGACTTTGATTGAGTTAG 692
|| | || | |||||||||||| | || || || || ||| || ||||||| ||||
Sbjct 641 CC---GTCCGATCGGAGAAGGTCAGCTCCGGCGAGCTAAGAAAG-CTCTGATTGATTTAG 696
Query 693 CAATTGGTATGCTTGATGAGAAGGATTCAT-CTTC---AAGCTCAGTGTCGTCGCAGCAT 748
|||| || |||||||| ||||| || |||| |||| || | || || | || |||
Sbjct 697 CAATCGGAATGCTTGACGAGAAAGA-TCATCCTTCTGGAA-C-CA--ATC-TAGC-TCAT 749
Query 749 CGTAACCGGTCTTTTGGAAGGA-ACAAGGAGCATCTTCATCACCGAACAATCGGGCATTT 807
|||||||| || || |||| || ||| || || ||| ||||| | || || |||||
Sbjct 750 CGTAACCGTTCATTCGGAA-GAGTCAAAGA-CA--GTCACCACCGTTCGATTGGTCATTT 805
Query 808 CAGGTCGCTTTCTTGGAGTGTTTCAAGATCATGGTCTGCTTCTAAGCAATTACAAGCTAT 867
||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
Sbjct 806 CAGATCTCTTTCTTGGAGTGTTTCAAGATCATGGTCAGCTTCTAAGCAGTTACAAGCT-T 864
Query 868 T-GGGAACAATTTAGCTACGCCTCGAGC-TA-G-TGACATTACTGCAACTAATGGTCTT- 922
| | || || || || ||||||||| | | | || | || || | | |||||| ||
Sbjct 865 TAGCGAGTAACTTGGCAACGCCTCGACCAAACGATGTCGTTGCT--AGC-AATGGT-TTA 920
Query 923 GTTGTTCCGGTTTATACGATGACTTCGATATTG-TTGTTTGTGATGTGGGCGCTT-GTGG 980
| ||| |||||||| || ||||||||| | ||| || ||||||||||||| || || |
Sbjct 921 GCTGTACCGGTTTACACAATGACTTCGGTTTTGCTT-TTTGTGATGTGGG-TTTTGGTAG 978
Query 981 CAGCGATTCCTTGTCAAGACAGAGGCTTGCAAGTGCATTTCAATGTTCCTAGGAATTACC 1040
| |||||||||||||||||| | || |||||||| | ||| ||| |||||| ||| ||
Sbjct 979 CTGCGATTCCTTGTCAAGACCGTGGATTGCAAGTTAACTTCTTTGTGCCTAGGCATTTCC 1038
Query 1041 AATGGGGAGGTTC-GTTGATGTCGTTGCACGATAGGATTATTGAGGAATCGAAGAAG-CG 1098
|||||| || | | ||| |||||||||||||||| |||| |||||||||| ||| || |
Sbjct 1039 AATGGGCAGCTCCGGTT-ATGTCGTTGCACGATAAGATTGTTGAGGAATCTAAG-AGAAG 1096
Query 1099 TGAGAGGAAGAACACTTGTGGGTTG-TTGAAAGAGATACATCA-GTTTGAGAGGAGTTCA 1156
|| |||||||| |||||| ||| || || ||||| || | | |||||| ||||||
Sbjct 1097 AGATAGGAAGAATTGTTGTGGTTTGCTT-AAGGAGATTGAT-AGGATTGAGAAGAGTTCG 1154
Query 1157 AGATTGATGAATGAGTTGGTTGATTCTG-TTCAGTTT-CCTTTGTCTGATGAGAAAG-AG 1213
|| ||||||||||| ||| | ||||| | |||| ||| || ||| |||||| || | ||
Sbjct 1155 AGGTTGATGAATGAATTGATCGATTC-GATTCA-TTTCCCGTTGAATGATGACAAGGAAG 1212
Query 1214 ATGGAAGTGAGAGAGAGGGTTGAGGA-ATTGGGGAAGCTTCAAGAAGCTTTGAAG-AATG 1271
| || |||| | |||| ||||| || ||| ||| ||| ||||||||| || ||||
Sbjct 1213 -TTGAGGTGAAACAGAGAGTTGATGAGCTTGTTCAAG-TTCGTGAAGCTTTG-AGAAATG 1269
Query 1272 GTTTGGATCCGTTTGAGAGGAAAGTGAGGGAAGTGTTTC-ATCGGATTGTTCGAAGCAGA 1330
||||||||||||||||||||||||| || ||||| |||| |||||||||| ||||||||
Sbjct 1270 GTTTGGATCCGTTTGAGAGGAAAGTAAGAGAAGT-TTTCCATCGGATTGTGAGAAGCAGA 1328
Query 1331 ACAGA-AGGTCTTGAT 1345
|| || || |||||||
Sbjct 1329 ACTGAGAG-TCTTGAT 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69929359185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5