BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476582
Length=1613
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74470.1 | Symbols: | Pyridine nucleotide-disulphide oxidor... 2595 0.0
> AT1G74470.1 | Symbols: | Pyridine nucleotide-disulphide oxidoreductase
family protein | chr1:27991165-27993006 FORWARD LENGTH=1648
Length=1648
Score = 2595 bits (1405), Expect = 0.0
Identities = 1558/1629 (96%), Gaps = 21/1629 (1%)
Strand=Plus/Plus
Query 1 agagagagagagagagTCCATTGTCGAAGTGTGTTCACTGAACTCCTCCTCAAACAACAA 60
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 25 AGAGAGAGAGAGAGACTCCATTGTTGAAGTGTGTTCACTGAACTCCTCCTCAAACAACAA 84
Query 61 TGGCGACGACAGTTACACTCAAATCCTTCACCGGACTTCGTCAATCATCAACGGAGCAAA 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 TGGCGACGACGGTTACACTCAAATCCTTCACCGGACTTCGTCAATCATCAACGGAGCAAA 144
Query 121 CAAACTTCGTCTCTCATGTACCGTCGTCACTTTCTCTCCCCCAACGACGGAGCTCTCTCC 180
||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||
Sbjct 145 CAAACTTCGTCTCTCATGTACCGTCATCACTTTCTCTCCCTCAACGACGGACCTCTCTCC 204
Query 181 GAGTAACCGCATCCAGAGCCACTCCCAAACTCTCCAACCGTAAACTCCGCGTCGCCGTCA 240
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 205 GAGTAACCGCAGCCAGAGCCACTCCCAAACTCTCCAACCGTAAACTCCGTGTCGCCGTCA 264
Query 241 TCGGTGGTGGTCCGGCAGGTGGAGCAGCTGCAGAGACTCTAGCACAAGGAGGAATCGAGA 300
|||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 265 TCGGTGGTGGACCAGCAGGCGGGGCAGCTGCAGAGACTCTAGCACAAGGAGGAATCGAGA 324
Query 301 CGATTCTCATCGAGCGTAAGATGGACAATTGCAAGCCTTGCGGTGGCGCGATTCCTCTCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 CGATTCTCATCGAGCGTAAGATGGACAATTGCAAGCCTTGCGGTGGCGCGATTCCTCTCT 384
Query 361 GTATGGTCGGAGAATTCAATTTGCCGTTGGACATTATCGACCGGAGAGTGACGAAGATGA 420
||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||
Sbjct 385 GTATGGTCGGAGAATTCAACTTGCCGTTGGATATTATTGATCGGAGAGTGACGAAGATGA 444
Query 421 AGATGATTTCGCCGTCGAACATCGCTGTTGACATTGGCCGTACGCTTAAGGAGCATGAGT 480
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 445 AGATGATTTCGCCGTCGAACATTGCTGTTGATATTGGTCGTACGCTTAAGGAGCATGAGT 504
Query 481 ATATAGGTATGGTGAGAAGAGAAGTGCTTGATGCGTATCTGAGAGAGAGAGCTGAGAAGA 540
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 505 ATATAGGTATGGTGAGAAGAGAAGTTCTTGATGCTTATCTGAGAGAGAGAGCTGAGAAGA 564
Query 541 GTGGAGCCACTGTGATCAACGGTCTCTTCCTTAAGATGGATCATCCGGAGAATTGGGACT 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 GTGGAGCCACTGTGATTAACGGTCTCTTCCTTAAGATGGATCATCCGGAGAATTGGGACT 624
Query 601 CGCCGTACACTTTGCATTACACTGAGTACGATGGTAAAACTGGAGCTACGGGGACGAAGA 660
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 625 CGCCGTACACTTTGCATTACACTGAGTACGATGGTAAAACTGGAGCTACAGGGACGAAGA 684
Query 661 AGACAATGGAGGTTGATGCTGTGATTGGAGCTGATGGAGCTAACTCTAGGGTTGCTAAAT 720
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 685 AAACAATGGAGGTTGATGCTGTCATTGGAGCTGATGGAGCTAACTCTAGGGTTGCTAAAT 744
Query 721 CTATTGATGCTGGTGATTACGATTACGCAATCGCATTTCAGGAGAGGATTAGGATTCCTG 780
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 745 CTATTGATGCTGGTGATTACGACTACGCAATTGCATTTCAGGAGAGGATTAGGATTCCTG 804
Query 781 ATGAGAAAATGACTTACTATGAGGATTTAGCTGAGATGTATGTTGGAGATGATGTGTCGC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 ATGAGAAAATGACTTACTATGAGGATTTAGCTGAGATGTATGTTGGAGATGATGTGTCGC 864
Query 841 CGGATTTCTATGGTTGGGTGTTCCCTAAGTGCGACCATGTAGCTGTTGGAACAGGTACTG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 CGGATTTCTATGGTTGGGTGTTCCCTAAGTGCGACCATGTAGCTGTTGGAACAGGTACTG 924
Query 901 TGACTCACAAAGGTGACATCAAGAAGTTCCAGCTCGCGACTC-GAAACAGAGCCAAAGAC 959
|||||||||||||||||||||||||||||||||||||||| | |||||||||| || |||
Sbjct 925 TGACTCACAAAGGTGACATCAAGAAGTTCCAGCTCGCGAC-CAGAAACAGAGCTAAGGAC 983
Query 960 AAGATTCTTGGAGGCAAGATCATCCGGGTGGAGGCTCACCCGATTCCCGAACACCCGAGA 1019
|||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||
Sbjct 984 AAGATTCTTGGAGGGAAGATCATCCGTGTGGAGGCTCATCCGATTCCTGAACATCCGAGA 1043
Query 1020 CCACGTAGGCTCTCGAAACGTGTTGCTCTTGTAGGTGATGCTGCAGGGTATGTGACTAAA 1079
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1044 CCACGTAGGCTCTCGAAACGTGTGGCTCTTGTAGGTGATGCTGCAGGGTATGTGACTAAA 1103
Query 1080 TGCTCTGGTGAAGGGATCTACTTTGCTGCTAAGAGTGGAAGAATGTGTGCTGAAGCCATT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 TGCTCTGGTGAAGGGATCTACTTTGCTGCTAAGAGTGGAAGAATGTGTGCTGAAGCCATT 1163
Query 1140 GTTGAAGGTTCACAGAATGGTAAGAAGATGATTGATGAAGGGGACTTGAGGAAGTACTTG 1199
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1164 GTCGAAGGTTCACAGAATGGTAAGAAGATGATTGACGAAGGGGACTTGAGGAAGTACTTG 1223
Query 1200 GAGAAATGGGATAAGACATACTTGCCTACCTACAGGGTGCTTGATGTGTTACAGAAAGTG 1259
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1224 GAGAAATGGGATAAGACATACTTGCCTACCTACAGGGTACTTGATGTGTTGCAGAAAGTG 1283
Query 1260 TTTTACAGATCGAATCCGGCAAGAGAAGCGTTTGTGGAGATGTGTGCTGATGAGTATGTT 1319
||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1284 TTTTACAGATCAAATCCGGCTAGAGAAGCGTTTGTGGAGATGTGTAATGATGAGTATGTT 1343
Query 1320 CAGAAGATGACATTCGATAGCTATCTGTACAAGCGGGTTGCACCGGGTAGTCCTTTGGAG 1379
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1344 CAGAAGATGACATTCGATAGCTATCTGTACAAGCGGGTTGCGCCGGGTAGTCCTTTGGAG 1403
Query 1380 GATATCAAGTTGGCAGTGAACACCATTGGAAGTTTGGTTAGGGCTAATGCTCTAAGGAGA 1439
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 GATATCAAGTTGGCTGTGAACACCATTGGAAGTTTGGTTAGGGCTAATGCTCTAAGGAGA 1463
Query 1440 GAGATTGAGAAGCTTAGTGTTTAAGAAACAA-T--------C---CT--TT-CTTCATCT 1484
||||||||||||||||||||||||||||||| | | || || ||||||||
Sbjct 1464 GAGATTGAGAAGCTTAGTGTTTAAGAAACAAATAATGAGGTCTATCTCCTTTCTTCATCT 1523
Query 1485 CAATCTCTCtttttttGTTTGTTAGTAAACTATCTACACTAATGTTGTTGCTCTTCAATA 1544
| |||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||
Sbjct 1524 CTATCTCTCTTTTTTTGTCTGTTAGTAATCTATCTACACTAATGTTGTTACTCTTCAATG 1583
Query 1545 TACTATTCAGTATCATATTTATGTTTTCTGTTCATTGAATTAGTCAAAAAAGCATTTGGC 1604
|| | | ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1584 TA-T-T-CAGTATCATATTTATGTTTTCTGTTCATTGAATTAGTCAAAAA-GCATTTGGC 1639
Query 1605 TTTACAATC 1613
|||||||||
Sbjct 1640 TTTACAATC 1648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79668264915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5