BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476610
Length=871
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74730.1 | Symbols: | Protein of unknown function (DUF1118)... 1173 0.0
> AT1G74730.1 | Symbols: | Protein of unknown function (DUF1118)
| chr1:28078857-28079987 FORWARD LENGTH=891
Length=891
Score = 1173 bits (635), Expect = 0.0
Identities = 814/896 (91%), Gaps = 30/896 (3%)
Strand=Plus/Plus
Query 1 GTTGAAATTACAAAGACATCATCTGACGTGGCAGTTTCTCTGTCT-CCAGAGTTTCAGAT 59
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 GTTGAAATCACAAAGACATCATCTGACGTGGCAGTTTCTCTGTCTATCAGAGTTTCAGAT 60
Query 60 AGTGTGCGAACGGTGAAAC-A-ACAC--ACG-AT-TC-------ATCA--TT--TCG-AT 101
||||||| ||||| ||||| | |||| | | || || |||| || ||| |
Sbjct 61 AGTGTGCCAACGGCGAAACAAGACACGAAAGAATCTCTAAAGAAATCATTTTCATCGCTT 120
Query 102 ---TT-GATCTTCCTTCAATGGCTGTCGTCGGCGCTCCGATATCGTCTCCGGCGACTCAC 157
|| ||| || ||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 121 CGCTTCGATTTTTCTTCAATGGCTGTCGTCGGCGCTCCAATATCGTCTCCGGCGGCTCAG 180
Query 158 CTGCAAACA-AGATTTATCTCCAATCCCATTCTCCCTCGCTTTCGCCGGTCTTTCTCCAC 216
||||| ||| | |||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 CTGCAGACACA-ATTTCTCTCCAATCCCATTCTCCCCCGCTTTCGCCGGTCTTTCTCCAC 239
Query 217 CGGAAAAGCACCAGCAACTTTCTCCGTCGTCTCCATGGCTCCCCAGAAAAAGGTGAACAA 276
||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 240 CGGAAAATCACCAGCAACTTTCTCCGTCGTAGCTATGGCTCCCCAGAAAAAGGTGAACAA 299
Query 277 GTATGATGCCAAGTGGAAGAAACAGTGGTACGGAGCTGGATTGTTCTTCGAAGGGAGTGA 336
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 300 ATATGATGCCAAGTGGAAGAAACAATGGTACGGAGCTGGATTGTTTTTCGAAGGGAGTGA 359
Query 337 GCAAATAAACGTCGACGTTTTCAAGAAGCTGGAGAAGCGAAAAGTGCTCAGCAACGTTGA 396
|||||||||||| || |||||||||||||||||||||||||||||| | |||||||||||
Sbjct 360 GCAAATAAACGTTGATGTTTTCAAGAAGCTGGAGAAGCGAAAAGTGTTGAGCAACGTTGA 419
Query 397 GAAATCTGGTCTGCTCTCTAAAGCAGAGGAGTTGGGACTCACATTGTCATCTCTTGAGAA 456
||||||||| ||||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 GAAATCTGGCCTGCTGTCAAAAGCAGAGGGGTTGGGACTCACATTGTCATCTCTTGAGAA 479
Query 457 GCTTAAAGTCTTCTCCAAAGCAGAGGATCTTGGTCTTCTCAGTCTTCTTGAAAACTTAGC 516
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 480 GCTTAAAGTCTTCTCCAAAGCAGAGGACCTTGGTCTTCTCAGTCTCCTTGAGAACTTAGC 539
Query 517 TGGAACATCGCCTGCTGTCTTAGCCTCGGCTGCATTACCGGCTCTCACGGCTGCTATTGT 576
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 TGGAACATCGCCTGCGGTCTTAGCCTCGGCTGCATTACCAGCTCTCACGGCTGCTATTGT 599
Query 577 CGCCTTGGTGTTGATCCCGGATGACTCAACTACTCTGGTGGTTGCTCAGGCGGTTTTGGC 636
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 600 AGCCGTGGTGTTGATCCCGGATGACTCAACTACTCTAGTGGTTGCTCAGGCGGTTTTGGC 659
Query 637 CGGTGCTCTTGCGCTTACAGGCGTTGTGTTGTTGGTTGGATCTGTTGTTTTGGATGGACT 696
||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 660 CGGTGCTCTTGCGCTTACAGGGGTTGTTTTGTTGGTTGGTTCTGTTGTTTTGGATGGACT 719
Query 697 TCAAGAAGCTGACTGATTCTTTCTTTGTAAACCAAACATaaaaaaaaC-CATTTGTACAA 755
|||||||||||||||||||||||| |||||||| |||||||| | | || || |||
Sbjct 720 TCAAGAAGCTGACTGATTCTTTCTCTGTAAACCGAACATAAACCCATGTC-TT-GTCCAA 777
Query 756 TTGATTTTTGTCAGTTGCTGATACTATAGCTGTATGGTTCAGTTGTTTATGGTTAGTCCA 815
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 778 TTGATTTTTGTCAGTTGCTGATT-TATAGCTGTATGGTTCAGTTGTTTATGGTTAGTCCA 836
Query 816 AGACATAAGCTGAGTGATATAAAGAAGCTTTTATAACAATTAAACAAACATTACAT 871
||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||||
Sbjct 837 AGACATAAGCTGAGTGATAGAAAGAAGCTTT-ATAATAATTAAACAAATATTACAT 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42498088362
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5