BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476624
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74880.1 | Symbols: NDH-O | NAD(P)H:plastoquinone dehydrogen... 894 0.0
> AT1G74880.1 | Symbols: NDH-O | NAD(P)H:plastoquinone dehydrogenase
complex subunit O | chr1:28129858-28131077 REVERSE LENGTH=788
Length=788
Score = 894 bits (484), Expect = 0.0
Identities = 578/623 (93%), Gaps = 8/623 (1%)
Strand=Plus/Plus
Query 1 GCGGTCTTATCCCGAAACTCCAAGAACACAGAA--AAGTTTCGTGGTGGTCTCTCCAATG 58
|||||||||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct 1 GCGGTCTTATCCCGAAACTCCAAGAACACATAATTTTTTTTCTTGGTGGTCTCTCCAATG 60
Query 59 GCTTTCTCAGCGACTCTGTCTCAGCTTTCTTCTCTTTCTACCATCTCCTCTTCATTACCA 118
|||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GCTTTCTCTGCGACTGTGTCTCAGCTTTCTTCTCTTTCAACCATCTCCTCTTCATTACCA 120
Query 119 CTTCCTTCTAGAAGATTCCCTCATCGATCTCTTCCTCAGTTCACAGTCAAAGCAGAGGTA 178
|| ||||||||||| |||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 121 ATTTCTTCTAGAAGACTCCCTCATCGATCTCTTCCTCAATTCACAGTCAAAGCAGAAGCA 180
Query 179 GAGAAAGAGAAGCAGAGCACACAGGCCAAATCTGAAGGGGAAGCATCACCAGCTGCAACC 238
||||||||||| ||||||||||||| ||| ||||| ||||||||||||||||||||||||
Sbjct 181 GAGAAAGAGAAACAGAGCACACAGGGCAAGTCTGATGGGGAAGCATCACCAGCTGCAACC 240
Query 239 AAAACCCCTAAAACTCTTCCCAAGAAACCGGTTTACTCGATGAAGAAGGGCCAAATAGTT 298
|||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 AAAACCCCTAAAACCCTCCCCAAGAAACCGGTTTACTCGATGAAGAAGGGCCAAATCGTT 300
Query 299 CGTGTGGACAAAGAGAAGTACCTTAACAGCATCAATTACTTATCAGTTGGACATCCTCCT 358
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 CGTGTGGAAAAAGAGAAGTACCTCAACAGCATCAATTACTTATCAGTTGGACATCCTCCT 360
Query 359 TTCTACAAAGGACTTGATTACATTTACGAAGATCGCGGGGAGGTCTTGGACCTTCGTGTC 418
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 361 TTCTACAAAGGACTTGATTACATATACGAAGATCGCGGCGAGGTCTTGGACCTTCGTGTC 420
Query 419 TTTGAGACAGGAGAGTATGCACTTGTTGGATGGGTTGGCATCCCCACCGCACCAGCTTGG 478
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 TTTGAGACAGGAGAGTATGCACTTGTTGGATGGGTTGGTATCCCCACCGCACCAGCTTGG 480
Query 479 CTACCAACAGATATGCTCATCAAGAGTGAGAAACTTGTTTATGAACGAATGTAGAGTCCA 538
|| ||||||||||||||||||||| |||||||||||||||| || ||||||||||||| |
Sbjct 481 CTCCCAACAGATATGCTCATCAAGTGTGAGAAACTTGTTTACGAGCGAATGTAGAGTCAA 540
Query 539 TA-GGCTTCCAAGAAGAATCCTTTGGAAAGCAACCGATA--CCAAGGGTTGTGTGTTAAG 595
| || |||||||||||||||||||||| ||||| |||| |||||| |||||| | |||
Sbjct 541 GAAGG-TTCCAAGAAGAATCCTTTGGAATGCAACTGATATACCAAGGATTGTGT-T-AAG 597
Query 596 CTGAGATGAATGATAAAAATGGC 618
|||||||||| ||||| ||||||
Sbjct 598 CTGAGATGAACGATAACAATGGC 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29788849171
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5