BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476636 Length=942 Score E Sequences producing significant alignments: (Bits) Value AT1G74970.1 | Symbols: RPS9, TWN3 | ribosomal protein S9 | chr1... 1343 0.0 > AT1G74970.1 | Symbols: RPS9, TWN3 | ribosomal protein S9 | chr1:28157530-28159302 REVERSE LENGTH=958 Length=958 Score = 1343 bits (727), Expect = 0.0 Identities = 887/961 (92%), Gaps = 23/961 (2%) Strand=Plus/Plus Query 1 TCTTCACTCTGCTCGTTATCTTCTTCC-TTTTACCTGTTCGACGAAACTCCTGAGCTCAG 59 ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 2 TCTTCACTCTGCTCGTTATCTTCTTCCTTTTTACCTGTTCAACGAAACTCCTGAGCTCAG 61 Query 60 CTTCA-----CT-----TTA----C-TCGTTCAGCGACAATGGCGTCGATTTCGAACCTT 104 ||||| || ||| | ||||||||||||||||||||||||| ||||||| Sbjct 62 CTTCACTTTGCTCGACGTTATCTTCTTCGTTCAGCGACAATGGCGTCGATTACGAACCTC 121 Query 105 GCTTCTTCTCTCTCTTCACTTTCGTTCTCCTCCCAAGTTTCTCAGAGACCTAACACAATC 164 || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || Sbjct 122 GCCTCTTCTCTCTCTTCACTCTCGTTCTCCTCCCAAGTTTCTCAAAGACCTAACACCATT 181 Query 165 TCCTTCCCCCGCGCGAATTCGGTGTTCGCATTACCGGCGAAATCCGAC-CGCCGCTCTTC 223 |||||||||||||||||||| || |||||||||||||||||||||| | |||||| |||| Sbjct 182 TCCTTCCCCCGCGCGAATTCAGTATTCGCATTACCGGCGAAATCCG-CACGCCGCGCTTC 240 Query 224 CCTATCTATTACCGCCACCGTAGCTGCTCCACCGGAGGAGGAGGAGATAATTGAGCTAAA 283 |||||||| |||||||| ||| |||||||||||||||||||||||||| |||| || || Sbjct 241 TCTATCTATCACCGCCACGGTATCTGCTCCACCGGAGGAGGAGGAGATAGTTGAACTGAA 300 Query 284 GAAGTACGTCAAATCGAGGCTTCCCGGAGGATTTGCTGCTCAGAAGATTATTGGCACTGG 343 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GAAATACGTCAAATCGAGGCTTCCCGGAGGATTTGCTGCTCAGAAGATTATTGGCACTGG 360 Query 344 ACGGCGTAAGTGCGCAATTGCTAGAGTTGTGCTTCAGGAAGGCACTGGGAAGGTTATCAT 403 ||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 361 ACGACGTAAGTGCGCAATCGCTAGAGTTGTTCTTCAGGAAGGTACTGGGAAGGTTATCAT 420 Query 404 AAACTACCGTGATGCCAAGGAGTACCTTCAGGGAAATCCACTATGGCTTCAGTATGTTAA 463 ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 421 CAACTATCGTGATGCCAAGGAGTACCTTCAGGGAAATCCATTGTGGCTTCAGTATGTTAA 480 Query 464 AGTCCCACTAGTGACTTTAGGGTATGAGAACAGCTACGACATATTTGTGAAAGCCCATGG 523 ||| ||| | ||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 481 AGTACCATTGGTGACTTTAGGATATGAGAATAGCTACGACATATTTGTGAAAGCCCATGG 540 Query 524 AGGCGGTCTCTCAGGTCAAGCTCAAGCTATTACCCTGGGAGTCGCACGTGCACTCCTCAA 583 ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| || Sbjct 541 AGGCGGTCTCTCAGGTCAAGCTCAAGCAATTACCTTGGGAGTCGCACGTGCACTCCTGAA 600 Query 584 GGTAAGTGCAGACCACAGATCGCCTTTGAAGAAAGAAGGTTTGCTCACTAGAGATGCGAG 643 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 601 GGTAAGTGCAGACCACAGATCGCCTTTGAAGAAGGAAGGTTTGCTCACTAGAGATGCGAG 660 Query 644 AGTGGTTGAAAGAAAGAAGGCCGGGCTCAAGAAGGCGCGTAAAGCACCACAATTCTCCAA 703 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 661 AGTGGTTGAAAGAAAGAAGGCCGGGCTCAAGAAGGCGCGTAAAGCCCCACAATTCTCCAA 720 Query 704 GCGTTAAGAGTTTTT-ATATCATTGGATCAACTCTTCAAGTAGACTCCTCTGCCTCCATT 762 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 GCGTTAAGAGTTTTACATATCATTGGATCAACTCTTCAAGTAGACTCCTCTGCCTCCATT 780 Query 763 CtttttttttAAACTCTTCTTGTCTATTAT-GTGTGTTTTGTTCCATGTTAATGTTTATG 821 |||||| ||||| |||||||||||||| | || ||||||| |||||||||||||||| Sbjct 781 -TTTTTTAA-AAACTTTTCTTGTCTATTATCG-GTCTTTTGTTTCATGTTAATGTTTATG 837 Query 822 TGTAGACGAACCAATACAATCTCTGTTTCGTTTGAATGGAAGGCAAAATTGGTATGCTTT 881 ||||||||||| |||||||||||||||| |||||||||||| ||||| ||| |||||||| Sbjct 838 TGTAGACGAACTAATACAATCTCTGTTTTGTTTGAATGGAACGCAAAGTTGATATGCTTT 897 Query 882 TGAAACAAATGCACTTATGAATTGTGATCAAACAAATGCACTTGTGAATCGTTTATCAGT 941 || ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 898 TGTAACAAATGCACTTATGAATTGTGATCAGACAAATGCACTTCTGAATCGTTTATCAGT 957 Query 942 T 942 | Sbjct 958 T 958 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46064712799 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5