BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476649
Length=2103
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75100.1 | Symbols: JAC1 | J-domain protein required for chl... 3020 0.0
> AT1G75100.1 | Symbols: JAC1 | J-domain protein required for chloroplast
accumulation response 1 | chr1:28190816-28193800
REVERSE LENGTH=2279
Length=2279
Score = 3020 bits (1635), Expect = 0.0
Identities = 1971/2124 (93%), Gaps = 60/2124 (3%)
Strand=Plus/Plus
Query 1 TGTGCTATGCAGACATTACCAAGCTCAGAAACCGTTCTTTTGGGCTCGAACTCAGCACCA 60
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 26 TGTGCTATGCAGACATTACCAAGCTCAGAAACCGTTCTTTTAGGCTCCAACTCAGCACCA 85
Query 61 CCTGTGCTACGTAATCCCGGCGGTGATGACGTGGACATCGATTTCGGTGACGTGTTTGGT 120
|||||| | |||| |||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 86 CCTGTGTTGCGTAGTCCCGGTGGCGATGACGTGGACATCGATTTTGGTGACGTGTTTGGT 145
Query 121 GGTCCTCCTAAGAGACGCTCTAAAGTTACTAATAGTAACCAAGTCACGA-GACATAGCTT 179
||||||||||||||||||||||||||||| ||||||| ||||||| | ||||||||||
Sbjct 146 GGTCCTCCTAAGAGACGCTCTAAAGTTAC---TAGTAACGAAGTCAC-ACGACATAGCTT 201
Query 180 CAGTGAATCCGCTCTCAGGCGTCGTGACGTCATCGTCGACGTCGGCTCTCTGATTCCGCA 239
|||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||
Sbjct 202 CAGTGAATCCGCTCTCCGGCGTCGTGACGTCATCGTCGACGTCGGCGATCTGCTTCCGCA 261
Query 240 AGACGAGAAGCCTGTTTTCGGCGAAGAGACATC--C-GTCCGGCGTCGTTTCACCACTGA 296
||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 262 AGACGAGAAGCCTGTATTCGGCGAAGATACATCATCTGTCCGGCGTCGTTTCACCACTGA 321
Query 297 TGATTTCTTCGACGATATTTTCAGAGTTAATGAATCATCTTCATCATCACTTCCGGGTTC 356
|||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 322 TGATTTCTTCGACGATATTTTCAGAGTTAATG-A--A---TCATCATCACTTCCGGGTTC 375
Query 357 TCGGATCCTAAGCCCGGCTCACAAACCCGAA---TCTTCAGGGACTTCGTCTCCAGCACA 413
||||||||| ||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 376 TCGGATCCTTAGCCCGGCTCACAAACCCGAATCTTCTTCAGGGACTTCGTCTCCATCCCA 435
Query 414 ATTCAGTCTTCCTGCAAAAGCAACAGAGATTCCTACATTTGGTTT---AGCTACTCGTAG 470
||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct 436 ATTCAGTCTTCCTGCAAAAGCAACAGAGATTCCAACATTTAATTTAGCAGCTACTCGTAG 495
Query 471 TTTGAGCAAGAACAAAGAAACAGTCTCGAGCTCTCCTTTGTCAAGAACTTCAAGCAAAGC 530
||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 496 TTTGAACAAGAACAAAGAAACTGTTTCGAGCTCTCCTTTGTCAAGAACTTCAAGCAAAGC 555
Query 531 CGATATGGTCTCTACTGCTAAATCATATTCAGATGATTGTGATGATCCTGCACGAGTTGT 590
||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
Sbjct 556 AGATGTGGTCTCTACTGCTAAATCATATTCAGATGATTGTGATGATCCTCCACAAGTTTT 615
Query 591 TGTTACTGGCAAAGGCAGGCAGTTTCATTTCTCTATTTACAAGTGGCCTAATAAAGGTGT 650
||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 616 TGTTACTGGGAAAGGAAGGCAATTTCATTTCTCTATCTACAAGTGGCCTAATAAAGGAGT 675
Query 651 TCCTGTTGTTATTTGGGGAAGCTCTAGATTGAGTTCTATGTCTAAAGCTGAGGGGACAAC 710
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 676 TCCTGTTGTTATTTGGGGAAGCTCTAGATTGAGTTCTATGTCTAAAGCTGAGGAGACAAC 735
Query 711 GCCGGTGA-CATTGAGTGATCATCGAAAAACTCCA---GTTGAGAAAGCGGGTGAAAATG 766
|| || | ||||||||||| ||||||||||| || ||||||||| |||| ||||||
Sbjct 736 ACCTGT-ACCATTGAGTGATTATCGAAAAACTTCAGTTGTTGAGAAATTGGGTAAAAATG 794
Query 767 AAGAA-G-GA--G--AAA---G------TGGTTTGAAAGAGGAGAAGAAGACCTCACTAA 811
||||| | || | ||| | |||||||||||| | |||||||||||| ||||
Sbjct 795 AAGAAGGAGATGGAAAAAGTGGTTTATCTGGTTTGAAAGATGTGAAGAAGACCTCGCTAA 854
Query 812 AGCGTCCTGGTGTTCAGACAAAAGAAGAGAAAACAGAAATC-GATTCGGTGTCTGAAAAA 870
||||||||||||| ||||||||||||||||||||||||| | |||| | ||||||| ||
Sbjct 855 AGCGTCCTGGTGTCCAGACAAAAGAAGAGAAAACAGAAA-CAGATTTGAAGTCTGAACAA 913
Query 871 GCCTTCTTTGGTGTGTCAAAAGCACGTGAGGCTAATGTGAAGCCTCTTTATTCAATTGAT 930
|||||||||||||| ||||||||||||||||||||||||||||||||| |||| | |
Sbjct 914 GCCTTCTTTGGTGTCTCAAAAGCACGTGAGGCTAATGTGAAGCCTCTTGATTC-A--G-- 968
Query 931 TTGAAGTCTAAACAGGCCTTCTCTGGTGTGTCAAAAGCTCATGAAGCTACTACTGTGAAG 990
||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 969 TTG-AGTCTGAACAGGCCTTCTCTGGTGTGTCAAAAGCACATGAAGCTACTACTGTGAAG 1027
Query 991 TCTCTTCATTCAATTTTGCATGAA-AACGATGAGAGACAAGGTGAGAAAATAGTATCAGA 1049
|||||||||||||||| |||||| || ||||||||||||| ||||||||||||||||||
Sbjct 1028 CCTCTTCATTCAATTTTTCATGAAGAA-GATGAGAGACAAGATGAGAAAATAGTATCAGA 1086
Query 1050 GAGAGAAGTGAGAAAAGGTAAAAGCAAAGCGAAGAACACGCAAAGTTTTACTGAAGATTC 1109
||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 1087 GAGAGAAGTGAGAAAAGGTAAAAGCAAAGCGAAGAACACTCGAAGTTTTACCGAAGATTC 1146
Query 1110 AAGAACAAAAAAGAAACCACAAGGCATTAAAAGTTCTTTGGATAGTAGCCCGATACCCGA 1169
|||||| || |||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1147 AAGAACCAAGAAGAAATCACAAGGCACTAAAAGTTCTTTGGATAGTAGCCCGATACCCGA 1206
Query 1170 TAAATCCAGCTTCGCAAGTTCATCCGCAGCACCAGAAGTTGGCAAAGATGGAGTCAAAGG 1229
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1207 TAAATCCAGCTTCGCAAGTTCATCAGCAGCACCAGAAGTTGGCAAAGATGGAGTCAAAGG 1266
Query 1230 AAAAGTCAGTGACTTTGTTAAGATTTTCAGTAAAGGAGCCTCAGGTGGAGCAGGTGGGGA 1289
|||||| |||||||| ||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1267 AAAAGTGAGTGACTTCGTTAAGATTTTCAGTAAAGGAGCTTCAGTTGGAGCAGGTGGGGA 1326
Query 1290 ATCTCTTGGACAAAGCTCTAGATGGAGAGCTAAGGAAACTCCCAAGACTGATATCAATCA 1349
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1327 ATCTCTTGGACAAAGCTCTAGATGGAGAGCTAAAGAAACTCCCAAGACTGATATCATTCA 1386
Query 1350 TGATGCTGCTAATGCCAAGGAAAATGTAAACATTCCTGATCAGCAAAAGAAATCGACTCC 1409
||||| | ||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1387 TGATGGTTCTAATGCCAAGGAAACTGTAAACATTCCTGATCAACAAAAGAAATCGACTCC 1446
Query 1410 AGATATCCCCGCTATGAATCGGGATTC-GAAACCTTCACATG-CAACTCAGAAAAAGGAT 1467
|||||||||||||||||||||||| || |||||||||||| | ||||||||||||| |||
Sbjct 1447 AGATATCCCCGCTATGAATCGGGA-TCAGAAACCTTCACA-GTCAACTCAGAAAAAAGAT 1504
Query 1468 TCAGACCGGGAGAGCATGAACTATAAGGCTACTGGTGTTACTGTACAAGAAGAGAGACAA 1527
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1505 TCAGACCGGGAGAGCATGAACTATAAGGCTCCTGGTGATACTGTACAAGAAGAGAGACAA 1564
Query 1528 GAACCGAGCACAACACATACTACCTCAGAGGATATAGATGAGCCCTTCCATGTAAATTTC 1587
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 GAACCTAGCACAACACATACTACCTCAGAGGATATAGATGAGCCCTTCCATGTAAATTTC 1624
Query 1588 GATGTGGAGGATATAACACAAGATGAAAACAACAAAATGGAAGAAACCAATAAGGATGCT 1647
|||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||
Sbjct 1625 GATGTGGAGGATATAACACAAGATGAAAACAA-AA--TGGAAGAGGCCAATAAGGATGCT 1681
Query 1648 GAAGAAATCAAGAACATCGATGCTAAAATCCGCAAGTGGTCAAGTGGAAAGAGCGGAAAC 1707
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1682 GAAGAAATCAAGAACATCGATGCTAAAATCCGCAAGTGGTCAAGCGGAAAGAGTGGAAAC 1741
Query 1708 ATTCGGTCTCTTCTATCTACGCTGCAATATATTCTTTGGTCCGGGAGCGGGTGGAAGCCA 1767
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1742 ATTCGGTCTCTTCTATCCACGCTGCAATATATTCTTTGGTCTGGGAGCGGGTGGAAGCCG 1801
Query 1768 GTTCCTCTAATGGATATGATCGAAGGAAACGCGGTTCGAAAATCGTACCAGAGGGCATTA 1827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 GTTCCTCTAATGGATATGATCGAAGGAAACGCGGTTCGAAAATCGTACCAGAGGGCATTA 1861
Query 1828 CTAATCCTTCATCCAGATAAACTACAACAAAAGGGTGCATCTGCAAACCAGAAATACATG 1887
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1862 CTAATACTTCATCCAGACAAACTACAACAAAAGGGTGCTTCTGCAAACCAGAAATACATG 1921
Query 1888 GCTGAGAAAGTTTTCGAATTATTACAGGAAGCATGGGACCACTTCAACACTCTCGGACCG 1947
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1922 GCCGAGAAAGTTTTCGAATTATTACAGGAAGCATGGGACCACTTCAACACTCTCGGACCG 1981
Query 1948 GTTTAAAGGAAGACAACGAGTCTTTAGTCTTTTAGTTCTT-ACACAAAGGCTATGTACAG 2006
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1982 GTTTAAAGGAAGAAAACGAGTCTTTAGTCTTTTAGTTCTTTACACAAAGGCTATGTACAG 2041
Query 2007 AGATACGGTTCTGAATCAAAAGATGTTGCAGAATTTTAGTTGTCACAGGTTTACTTACAT 2066
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2042 A--TACGGTTCTGAATCAAAAGATGTTGCAGAATTTTAGTTGTCACAGGTATACTTACAT 2099
Query 2067 CAATTTTTTGTTGGTTTGTTGAGA 2090
||| ||||||||||||||||||||
Sbjct 2100 CAAATTTTTGTTGGTTTGTTGAGA 2123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104266531965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5