BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476695
Length=2577
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75450.1 | Symbols: CKX5, ATCKX5, ATCKX6 | cytokinin oxidase... 3378 0.0
AT1G75440.1 | Symbols: UBC16 | ubiquitin-conjugating enzyme 16 ... 250 5e-65
> AT1G75450.1 | Symbols: CKX5, ATCKX5, ATCKX6 | cytokinin oxidase
5 | chr1:28314458-28318362 REVERSE LENGTH=2711
Length=2711
Score = 3378 bits (1829), Expect = 0.0
Identities = 2204/2374 (93%), Gaps = 69/2374 (3%)
Strand=Plus/Plus
Query 1 ATAAACGCATAAACTCGATAAATTTGTACGAAAT-TAA----TATTAAAACCACTCGTTA 55
||||||||| ||||||| |||||||||||| ||| ||| | |||||| |||||||||
Sbjct 1 ATAAACGCACAAACTCGTTAAATTTGTACG-AATATAATTTTTTTTAAAA-CACTCGTTA 58
Query 56 TATATTTTTAATAAGATTAAAGTTTCACCCAACCCGaaaaaaaGAGGAGAATCTGTGCAT 115
|| | | || ||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct 59 TA-A----T-AT---ATTAAAGTTTCACCCAAACCG-AAAAAAGA-GAGAATCTGTGCAT 107
Query 116 GTTGCTCAGAAAATCTTCAAAGCGTAATCTGGGCTTACGTTAGCTCTCACGAACCCCCAA 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 GTTGCTCAGAAAATCTTCAAAGCGTAATCTGGGCTTACGTTAGCTCTCACGAACCCCCAA 167
Query 176 GGATATCCTATATATATATGTTTTTTCATTTCCCCATAAAATTTTTCGTTATCTaaaaaa 235
|| || || | |||||||||||||||||||||||||||||| |||| |||||| |||||
Sbjct 168 GG--AT-CT-TCTATATATGTTTTTTCATTTCCCCATAAAATCTTTCATTATCT-AAAAA 222
Query 236 aaaTTATTATCGTATAtttttttCTTCTATATATTCTTTCTCCTCGATCTTGATTCTTGT 295
| ||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 223 ATATTATTATCGTAT-CTTTTTTCTTCTATATATTCTTCCTCCTCAATCTTGATTCTTGT 281
Query 296 TTCTTGACTATTTATTTGATGAATCGTGAAATGACGTCAAGCTTTCTTCTCATGACGTTC 355
||||||| || || ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 282 TTCTTGAGTA-TTCTTTGATGAATCGTGAAATGACGTCAAGCTTTCTTCTCCTGACGTTC 340
Query 356 GCTATATGTAAACTGATCATAGCCGTTGGTCTAAACGTGGGCCCCAGTGAGCTTCTCCGC 415
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 341 GCCATATGTAAACTGATCATAGCCGTGGGTCTAAACGTGGGCCCCAGTGAGCTCCTCCGC 400
Query 416 ATCGGAGCCATAGATGTCGATGGCCACTTCACCGTCCACCCTTCCGCCTTAGCCTCCGTA 475
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 401 ATCGGAGCCATAGATGTCGACGGCCACTTCACCGTCCACCCTTCCGACTTAGCCTCCGTC 460
Query 476 TCGTCTGACTTCGGTATGCTGAGGTCGCCGGAAGAGCCACTAGCCGTGCTACATCCTTCC 535
|| || |||||||||||||||| ||| || ||||||||| | |||||||| ||||| ||
Sbjct 461 TCCTCAGACTTCGGTATGCTGAAGTCACCTGAAGAGCCATTGGCCGTGCTTCATCCATCA 520
Query 536 TCGGCCGAAGACGTGGCGCGACTCGTCAGAACAGCTTATGGTTCGGCCACGGCGTTTCCG 595
||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 521 TCGGCCGAAGACGTGGCACGACTCGTCAGAACAGCTTACGGTTCAGCCACGGCGTTTCCG 580
Query 596 GTCTCAGCCCGAGGCCATGGCCATTCCATAAACGGACAAGCCGCGGCGGGGAGGAACGGT 655
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 GTCTCAGCCCGAGGCCACGGCCATTCCATAAACGGACAAGCCGCGGCGGGGAGGAACGGT 640
Query 656 GTTGTGGTTGAAATGAACCACGGCGTAACCGGGACGCCGGAGCCACTCGTCCGACCGGAT 715
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 641 GTGGTGGTTGAAATGAACCACGGCGTAACCGGGACGCCCAAGCCACTCGTCCGACCGGAT 700
Query 716 GAAATGTATGTGGACGTTTGGGGTGGAGAGTTATGGGTCGATGTGTTGAAGAAAACGTTG 775
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 GAAATGTATGTGGATGTATGGGGTGGAGAGTTATGGGTCGATGTGTTGAAGAAAACGTTG 760
Query 776 GAGTATGGCTTAGCACCAAAATCATGGACTGATTACTTGTACCTAACCGTTGGAGGTACA 835
||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 761 GAGCATGGCTTAGCACCAAAATCATGGACGGATTACTTGTATCTAACCGTTGGAGGTACA 820
Query 836 CTCTCCAATGCAGGAATTAGCGGTCAAGCTTTTCACCATGGTCCTCAGATTTCTAACGTC 895
||||||||||||||||| || |||||||||||||||||||||||||| ||| |||||||
Sbjct 821 CTCTCCAATGCAGGAATCAGTGGTCAAGCTTTTCACCATGGTCCTCAAATTAGTAACGTC 880
Query 896 CTTGAGCTCGACGTTGTAACTGGGAAAGGAGAGGTGATGAGATGCTCAGAAGAAGAGAAC 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 CTTGAGCTCGACGTTGTAACTGGGAAAGGAGAGGTGATGAGATGCTCAGAAGAAGAGAAC 940
Query 956 ACAAGGCTATTCCATGGAGTTCTTGGTGGGTTAGGTCAATTTGGGATCATCACTCGAGCA 1015
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 941 ACAAGGCTATTCCATGGAGTTCTTGGTGGATTAGGTCAATTTGGGATCATCACTCGAGCA 1000
Query 1016 AGAATCTCTCTCGAACCTGCTCCCCAAAGGGTAAGATGGATACGGGTATTGTATTCGAGC 1075
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1001 CGAATCTCTCTCGAACCAGCTCCCCAAAGGGTGAGATGGATACGGGTATTGTATTCGAGC 1060
Query 1076 TTCAAAGTGTTTACAGAGGACCAAGAGTACTTAATCTCGATGCATGGTCAGTTAAAGTTT 1135
|||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1061 TTCAAAGTGTTTACGGAGGACCAAGAGTACTTAATCTCAATGCATGGTCAATTAAAGTTT 1120
Query 1136 GATTACGTGGAAGGTTTTGTGATTGTGGACGAAGGTCTCGTCAACAATTGGAGATCTTCT 1195
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1121 GATTACGTGGAAGGTTTTGTGATTGTGGACGAAGGACTCGTCAACAATTGGAGATCTTCT 1180
Query 1196 TTCTTCTCCCCACGCAACCCCGTCAAGATCTCCTCTGTGAGTTCTAACGGCTCTGTTTTG 1255
|||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1181 TTCTTCTCTCCACGTAACCCCGTCAAGATCTCCTCTGTTAGTTCCAACGGCTCTGTTTTG 1240
Query 1256 TATTGCCTGGAGATCACCAAGAACTACCACGACTCCGACTCCGAAACCGTTGATCAGGAA 1315
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1241 TATTGCCTTGAGATCACCAAGAACTACCACGACTCCGACTCCGAAATCGTTGATCAGGAA 1300
Query 1316 GTAGATATTCTGATGAAGAAATTGAATTTCATACCGACATCGGTCTTTACAACGGATTTA 1375
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 GTTGAGATTCTGATGAAGAAATTGAATTTCATACCGACATCGGTCTTTACAACGGATTTA 1360
Query 1376 CAGTATGTAGACTTTCTCGACCGGGTACACAAGGCGGAATTGAAGCTCCGGTCCAAGAAT 1435
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1361 CAATATGTGGACTTTCTCGACCGGGTACACAAGGCCGAATTGAAGCTCCGGTCCAAGAAT 1420
Query 1436 TTATGGGAGGTTCCACATCCATGGCTCAACCTCTTCGTGCCAAAATCAAGAATCTCTGAT 1495
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 TTATGGGAGGTTCCACACCCATGGCTCAACCTCTTCGTGCCAAAATCAAGAATCTCTGAC 1480
Query 1496 TTTGACAAAGGCGTTTTCAAGGGCATTTTGGGAAATAAAACAAGTGGCCCTATCCTTATC 1555
|| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1481 TTCGATAAAGGCGTTTTCAAGGGCATTTTGGGAAATAAAACAAGTGGCCCTATTCTTATC 1540
Query 1556 TACCCCATGAACAAAGACAAATGGGACGAGAGGAGCTCAGCGGTGACGCCGGATGAGGAA 1615
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1541 TACCCCATGAACAAAGACAAATGGGACGAGAGGAGCTCAGCCGTGACGCCGGATGAGGAA 1600
Query 1616 GTTTTCTATCTGGTGGCTCTATTGAGATCAGCTTTAAAGGATGGTGAGGAGACGCAGAAG 1675
||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| ||||||
Sbjct 1601 GTTTTCTATCTGGTGGCTCTATTGAGATCAGCTTTAACGGACGGTGAAGAGACACAGAAG 1660
Query 1676 CTCGAGTATCTGAAAGATCAGAACCGTCGGATCTTGGAGTTCTGTGAACAAGCCAAGATC 1735
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 CTAGAGTATCTGAAAGATCAGAACCGTCGGATCTTGGAGTTCTGTGAACAAGCCAAGATC 1720
Query 1736 AATGTGAAGCAGTACCTTCCCCACCACGCAACACAGGAAGAGTGGGAGGCTCATTTTGGG 1795
|||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1721 AATGTGAAGCAGTATCTTCCTCACCACGCAACACAGGAAGAGTGGGTGGCTCATTTTGGG 1780
Query 1796 GACAAGTGGGATCGGTTCAGAAGGTTGAAGGCCGAGTTTGATCCGCGACATATACTTGCT 1855
||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||| |||
Sbjct 1781 GACAAGTGGGATCGGTTCAGAAGCTTAAAGGCTGAGTTTGATCCGCGACACATACTCGCT 1840
Query 1856 ACTGGTCAGAGAATCTTTCAGAACCCATCTCTGTCTTTGTTTCCTCCGT--T-GTCTTCT 1912
|||||||||||||||||||| ||||||||| |||||||||||||||||| | |||||||
Sbjct 1841 ACTGGTCAGAGAATCTTTCAAAACCCATCTTTGTCTTTGTTTCCTCCGTCGTCGTCTTCT 1900
Query 1913 TCG---GC---TTCATGGTGACA-AG-ACAAAACCAA-AGGAAAGTAGTAGTTGAGAAAT 1963
||| || |||||||||||| || |||||||||| ||||||||||||||||||||||
Sbjct 1901 TCGTCAGCGGCTTCATGGTGACACAGGACAAAACCAAGAGGAAAGTAGTAGTTGAGAAAT 1960
Query 1964 ATTCTTCCTGATGTATATATATGACCTAATAGAGAAGCATCAGAGAGATTAGGTTGGGTC 2023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1961 ATTCTTCCTGATGTATATATATGACCTAATAGAGAAGCATCAGAGAGATTAGGTTGGGTC 2020
Query 2024 TTTTGTTAGTAGGGGTTTAAAAATTAGAGTAGAAGATTCAGA-TTAGT-AA-TTTATTGT 2080
|||||||||||||||||| ||||||||||||||||||||| | ||||| || ||||||||
Sbjct 2021 TTTTGTTAGTAGGGGTTTTAAAATTAGAGTAGAAGATTCAAAATTAGTCAAATTTATTGT 2080
Query 2081 GTTGTTTTTATACATCACGGATTTTGGAGATGGGTTTGGGACAGCTTGAAGCCTTAAACC 2140
|||||||||||||||||||||||||||| |||||||||||||||||| || || |
Sbjct 2081 GTTGTTTTTATACATCACGGATTTTGGAAATGGGTTTGGGACAGCTTAAA-CC-----C- 2133
Query 2141 AGATTAAATTTAAAAATAGACAACAAACCTCTA----T-TT----A--A-----CATTTG 2184
| |||||||| |||||||||||||||||||| | | || | | |||||
Sbjct 2134 A-ATTAAATT-AAAAATAGACAACAAACCTCAAAGACTGTTTTGGACTATTTTACATTTT 2191
Query 2185 TTTTGGTCAAACGAG-TTTCATACTTTATCGTCGTGGAACCACCATCGGGTCTCCTTTGG 2243
||||||| | |||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2192 TTTTGGTTGATCGAGGTTT-ATACTTTATCGTCGTGGAACCACCATCGGGTCTCCTTTGG 2250
Query 2244 AGATCTTCCATTCTTACAATTCTTCACATATCGATCATTATCGGTTGGTCGTTGCTGCAA 2303
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2251 AGATCTTCCGTTCTTACAATTCTTCACATATCGGTCATTATCGGTTGGTCGTTGCTGCAA 2310
Query 2304 CAAAACCAA-CCAAGTAAGAGGAAGGTTCAGCTT 2336
|||||| || ||||| ||| |||||||||||||
Sbjct 2311 CAAAAC-AAGCCAAGCGAGACGAAGGTTCAGCTT 2343
Score = 228 bits (123), Expect = 2e-58
Identities = 175/200 (88%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 2354 AGAGCTGTATGTACCTTTTCAGTCGAGCTTGAGAGCATGGAAAGGATGCTGATGCAGACA 2413
||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 2387 AGAGCTGTAAGTACCTTTTCAGTCGAGCTTGAGAGCATGGAGAGGATGCTAATGCAGATA 2446
Query 2414 GAGCTAACCGTCATGGCTGGAGACCACGAATCATACAAAATATCTGCAAAAATGATACAC 2473
|| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2447 GAACTCACCGTCATGGCTGGAGACCACGAATCATACAAAATATCTGCAACGATGATACAC 2506
Query 2474 AACATCAGATTCTTCTTCG-GTGTGGCCTAAGTTTAATAATAATAATGCGGGA-TATGAG 2531
|||||||||| ||||||| | | |||||| ||| |||||||| | | | | | ||||
Sbjct 2507 AACATCAGATACTTCTTCCAG-GAGGCCTATGTTAAATAATAAGC-TACTGAAATTTGAG 2564
Query 2532 TGTACCGTTGTATCTAAAAG 2551
|||||| ||| |||||||||
Sbjct 2565 TGTACCCTTGGATCTAAAAG 2584
> AT1G75440.1 | Symbols: UBC16 | ubiquitin-conjugating enzyme 16
| chr1:28313487-28315122 FORWARD LENGTH=784
Length=784
Score = 250 bits (135), Expect = 5e-65
Identities = 230/270 (85%), Gaps = 30/270 (11%)
Strand=Plus/Minus
Query 2050 GAGTAGAAGATTC-AGATTAGT--AATTTATTGTGTTGTTTTTATACATCACGGATTTTG 2106
||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 784 GAGTAGAAGATTCAAAATTAGTCAAATTTATTGTGTTGTTTTTATACATCACGGATTTTG 725
Query 2107 GAGATGGGTTTGGGACAGCTTGAAGCCTTAAACCAGATTAAATTTAAAAATAGACAACAA 2166
|| |||||||||||||||||| | || ||| |||||| |||||||||||||||||
Sbjct 724 GAAATGGGTTTGGGACAGCTT--A-----AACCCA-ATTAAA-TTAAAAATAGACAACAA 674
Query 2167 A---C-----C-----T---CTATTTAACATTTGTTTTGGTCAAACGA-GTTTCATACTT 2209
| | | | |||||| |||||| ||||||| | ||| |||| ||||||
Sbjct 673 ACCTCAAAGACTGTTTTGGACTATTTTACATTTTTTTTGGTTGATCGAGGTTT-ATACTT 615
Query 2210 TATCGTCGTGGAACCACCATCGGGTCTCCTTTGGAGATCTTCCATTCTTACAATTCTTCA 2269
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 614 TATCGTCGTGGAACCACCATCGGGTCTCCTTTGGAGATCTTCCGTTCTTACAATTCTTCA 555
Query 2270 CATATCGATCATTATCGGTTGGTCGTTGCT 2299
||||||| ||||||||||||||||||||||
Sbjct 554 CATATCGGTCATTATCGGTTGGTCGTTGCT 525
Score = 143 bits (77), Expect = 9e-33
Identities = 94/102 (92%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 2368 CTTTTCAGTCGAGCTTGAGAGCATGGAAAGGATGCTGATGCAGACAGAGCTAACCGTCAT 2427
||||||||||||||||||||||||||| |||||||| ||||||| ||| || ||||||||
Sbjct 526 CTTTTCAGTCGAGCTTGAGAGCATGGAGAGGATGCTAATGCAGATAGAACTCACCGTCAT 467
Query 2428 GGCTGGAGACCACGAATCATACAAAATATCT-G-CAAAAATG 2467
||||||||||||||||||||||||||||||| | |||| |||
Sbjct 466 GGCTGGAGACCACGAATCATACAAAATATCTAGACAAATATG 425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127925704650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5