BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476696
Length=1604
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75460.1 | Symbols: | ATP-dependent protease La (LON) domai... 1299 0.0
> AT1G75460.1 | Symbols: | ATP-dependent protease La (LON) domain
protein | chr1:28327886-28329764 FORWARD LENGTH=1879
Length=1879
Score = 1299 bits (703), Expect = 0.0
Identities = 845/911 (93%), Gaps = 19/911 (2%)
Strand=Plus/Plus
Query 28 CAAAT-ATGTAATAAAACCCttttttttttGTATACTCTGATTACTTCGTCTCTTCTTCC 86
||||| ||||||| |||||| | |||||||||| |||||||||||||| || ||||||
Sbjct 41 CAAATAATGTAAT-AAACCC--TCTTTTTTGTATTCTCTGATTACTTCG--TC-TCTTCC 94
Query 87 CCTGTAATGGCGCTTCCACACGTAGTCTCTTCACCTTCTTCAACTTCATTGTCTCCTTCC 146
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 95 CCTGTAATGGCGCTTCCACACGTAGTCTCTTCACCTTCTTCAACTTCATTATCTCCTTCC 154
Query 147 TTCAAATCC-AA--A-C----CAC-CCCTTAGATCTCTATCTCCGACACTTGATAATCGC 197
||||||||| || | | ||| ||||||||||| |||| ||||| |||||||||||
Sbjct 155 TTCAAATCCAAACCACCGTTTCACTCCCTTAGATCTTTATCACCGACGGTTGATAATCGC 214
Query 198 CGGCGTTGTAAGCTCAACAGTTCCTTCCGATGTTCATCTTCTTCATTCTCCGAGAAGCAT 257
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 CGGCGTTGTAAACTCAACAGTTCCTTCCGATGTTCATCTTCTTCATTCTCCGAGAAGCAT 274
Query 258 CACAACAACGCCAAATATCCGAAATCCGATGACATCGTCGAGCTTCCTCTGTTTCCACTA 317
| ||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 275 --C-ACAACGCGAAATCTCCAAAATCCGATGATATCGTCGAGCTTCCTCTGTTTCCACTC 331
Query 318 CCACTCGTTCTCTTCCCCGGAGCAATCCTCCCTCTTCAGATCTTCGAATTCCGTTACCGT 377
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 332 CCACTCGTTCTCTTCCCCGGAGCAATCCTTCCTCTTCAGATCTTCGAATTCCGTTACCGT 391
Query 378 ATCATGATGCACACTCTCCTCCAATCCGATCTCCGATTCGGCGTCGTTTACTCTGATTCA 437
|||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| |||||
Sbjct 392 ATCATGATGCACACGCTCCTCCAATCTGATCTACGATTCGGCGTAGTTTACTCCGATTCC 451
Query 438 GTCTCTGGCTCCGCCGCAGAAGTCGGATGCGTCGGCGAAGTCGTGAAACACGAGCGTCTT 497
||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||
Sbjct 452 GTCTCTGGCTCCGCCGCAGAAGTAGGATGTGTAGGAGAAGTCGTGAAACACGAGCGTCTC 511
Query 498 GTCGATGATCGATTCTTCCTAGTCTGCAAAGGTCAAGAACGATTCCGAGTCACGAATCTC 557
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 512 GTCGATGATCGATTCTTTCTAGTCTGCAAAGGTCAAGAACGATTCCGAGTCACGAATGTC 571
Query 558 GTCCGCAAGAAACCTTACCTTGTCGGAGAAGTCACGTGGCTTGAAGATCGTCCTTCCGGT 617
|| || | |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 GTTCGTACGAAACCCTACCTTGTCGGAGAAGTCACGTGGCTTGAAGATCGTCCTTCCGGT 631
Query 618 GAAGAGAATCTTGATTCGTTAGCGAATGAAGTCGAAGTGCTGATGAAAGAAGTGATTCGG 677
||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||| ||
Sbjct 632 GAAGAAAATCTTGATTCGTTAGCTAATGAAGTCGAAGTTCTAATGAAAGAAGTGATTAGG 691
Query 678 TTATCGAATAGATTGAATGGGAAGGCTGAGAAAGAAGTTCAAGATCTGAGGAGGAATCAG 737
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 692 TTATCGAATAGATTGAATGGTAAGGCTGAGAAAGAAGTTCAAGATCTGAGGAGGAATCAG 751
Query 738 TTCCCGACGCCGTTCTCGTTCTTCGTCGGAAGTACGTTTGAAGGAGCTCCTAGAGAGCAG 797
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 TTTCCGACGCCGTTTTCGTTCTTCGTCGGAAGTACGTTTGAAGGAGCTCCTAGAGAGCAG 811
Query 798 CAAGCGTTGCTTGAGCTTGAAGATACTGCGGCTAGGTTAAAGAGAGAAAGAGAGACGTTG 857
|||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||
Sbjct 812 CAAGCGTTGCTTGAGCTTGAAGATACGGCAGCTAGGTTAAAAAGAGAAAGAGAGACTTTG 871
Query 858 AGGAATACACTTAATTATTTGACTGCTGCTTCTGCTGTTAAAGATGTGTTTCCTTCGTCG 917
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 872 AGGAATACACTTAATTATTTGACTGCAGCTTCTGCTGTTAAAGATGTGTTTCCTTCATCA 931
Query 918 TCTTAGTATGT 928
||||||| |||
Sbjct 932 TCTTAGTGTGT 942
Score = 339 bits (183), Expect = 7e-92
Identities = 251/283 (89%), Gaps = 7/283 (2%)
Strand=Plus/Plus
Query 1323 GTTTAGGGTTGAGCAGAGTGAGTCTGGTGGTGTTTCTTTCGAGTCAAGATAGTCTCTATC 1382
|||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1590 GTTTAGGGTTTAGCAGAGTGACTCTGGTGGTG----TTTCGAGTCAAGATAGTCTCTATC 1645
Query 1383 GATTCATATTGCTACACCAAACATATATTTTTGAACTTTTCTGCTATAAGAATTAAAAAG 1442
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1646 GATTCAAATTGCTACACCAAACATATATTTTCGAACTTTTCTGCTATAAGAATTAACAAG 1705
Query 1443 TGTCCGCGAGAAGAAGATGATTTCGGTTACAGCTCTCTgtttttatggctccatgttttg 1502
||| ||||| |||||||||||||| |||||| ||||||||||| ||||||||||| ||
Sbjct 1706 TGTTCGCGACAAGAAGATGATTTCTGTTACAAA-CTCTGTTTTTACGGCTCCATGTTCTG 1764
Query 1503 tttttcttcaaaa-atattttcataaataagaaaggttttttggtgaatataattttACA 1561
|||||||||||| || || | ||| ||| ||||||||||||||||||||||||| ||
Sbjct 1765 TTTTTCTTCAAAGCATCTTGTG-TAATTAACAAAGGTTTTTTGGTGAATATAATTTGGCA 1823
Query 1562 TAAAAAATTTATGTACACTAGTTGTTTCCGTTGCCATAAAAAA 1604
| |||| |||||||||| |||||||||| |||||||||||||
Sbjct 1824 TTCAAAACTTATGTACACGAGTTGTTTCCTTTGCCATAAAAAA 1866
Score = 261 bits (141), Expect = 2e-68
Identities = 309/383 (81%), Gaps = 39/383 (10%)
Strand=Plus/Plus
Query 940 TATATTGAGCTTTGTCAGTAATTGAATATACGAAACTTATGAAAAACTGCAAAGTTATGA 999
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1000 TATATTGAGCTTTGTCAGTAATTGAATATACGAAACTTATGAAAACCTGCAAAGTTGTGA 1059
Query 1000 G-GTG-A-TT---TTGGT-----GGT-ATTAT------ATTAGTAGATGTTTTGAGGGTT 1041
||| | || || || ||| ||| | ||||||| ||||||||| ||||
Sbjct 1060 AAGTGTAATTGCCTTTGTAATACGGTGATTTTGGTGGTATTAGTATATGTTTTGAAGGTT 1119
Query 1042 TTGATAGGATTTATAGCTTAATTGATCACAAAAGTGTTGTGCTTTTCTTGAGTTAGCATT 1101
|| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||| ||
Sbjct 1120 TTTATAGGATTTATAGCTGAATTGATCACAAAAATGTTGTGGTTTACTTGAGTTAGC-TT 1178
Query 1102 T-ACAGTG-AAAGCCTAGATTA-CATGCTATGTCAACAATTC-TGCGTAGACTGATTT-T 1156
| |||| ||| |||||| | | ||||||||||||||||| | |||| || | |
Sbjct 1179 CCAAAGTGGAAA-CCTAGAGAATC-TGCTATGTCAACAATTCCTAA-TAGAGAGAGATGT 1235
Query 1157 TGA-TAAGTAGAAAGGGA-TGTCAAGACTGCTACGACTCATATAGAGACTAAGTAGTGTT 1214
| | ||| | | |||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1236 TCACTAA--ACCA-GGGAATGTCAAAACTGCTACGACTCATATAGAGACTAAGTAGTGTT 1292
Query 1215 GGTTGCTTTGTCTA--TAG----GCCT-ATGGTACTTGTATCAGTTTTGTTGCAACAATG 1267
||||||||| |||| || | || ||||||||||||||||||| |||||||| |||
Sbjct 1293 GGTTGCTTTATCTACATACTATAGACTTATGGTACTTGTATCAGTTTCGTTGCAACTATG 1352
Query 1268 GTACTGAATAAATTAGCTTTGGT 1290
|||||| | ||||| |||||||
Sbjct 1353 GTACTGGTTTAATTATCTTTGGT 1375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79216460010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5