BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476699 Length=1757 Score E Sequences producing significant alignments: (Bits) Value AT1G75500.1 | Symbols: WAT1 | Walls Are Thin 1 | chr1:28337785-... 2654 0.0 > AT1G75500.1 | Symbols: WAT1 | Walls Are Thin 1 | chr1:28337785-28340241 REVERSE LENGTH=1817 Length=1817 Score = 2654 bits (1437), Expect = 0.0 Identities = 1647/1743 (94%), Gaps = 35/1743 (2%) Strand=Plus/Plus Query 1 TGGTGGTTCCCACAAGCAAAGAGAGGAATGAGATAGCTATCTACCTATATTTATATCTCC 60 ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 2 TGGTGGTTCCCACAAGCAAAGAGGGGAATGAGATTGCTATCTACCTATATTTATATCTCC 61 Query 61 ACAACTTCACTCTTTTCCTCAATCAacacacacaaacatacacacacaGCA-CC-TTCTC 118 ||||||||||||||||||||||||||||||||||||| ||||||||| || || || || Sbjct 62 GCAACTTCACTCTTTTCCTCAATCAACACACACAAACACACACACACA-CAGCCTTTTTC 120 Query 119 CATCGTTTGATAGATTGTTTAGTTCGATCCAATGGCGGATAACACCGGAAACGATAATCG 178 | ||| ||||| ||||||| || ||||||||||||||||||||| | ||||||||| Sbjct 121 CTTCG-TTGATCGATTGTTAAGCTCGATCCAATGGCGGATAACA-C-----CGATAATCG 173 Query 179 GAGATCGTTATGGGGAGTTCCGGAGAAGCTTCAGCTTCACATAGCGATGCTGACGTTGCA 238 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 174 GAGATCCTTATGGGGAGTTCCGGAGAAGCTTCAGCTTCACATAGCGATGCTGACGTTGCA 233 Query 239 ATTCGGTTACGCCGGATTCCACGTGGTGTCTCGAGCTGCTCTTAACATGGGAATCAGCAA 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 234 ATTCGGTTACGCCGGATTCCACGTGGTGTCTCGAGCTGCTCTTAACATGGGAATCAGCAA 293 Query 299 ACTCGTCTTCCCTGTTTATCGTAACATCATCGCCTTGCTTCTTCTCCTTCCATTCGCTTA 358 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 294 ACTCGTCTTCCCTGTTTATCGTAACATCATCGCCTTGCTTCTTCTCCTTCCCTTCGCTTA 353 Query 359 CTTCCTCGAAAAGAAGGAGAGGCCAGCGATTACTCTCAACTTTCTCATCCAGTTCTTCTT 418 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 354 CTTCCTTGAAAAGAAGGAGAGACCAGCGATTACTCTCAACTTTCTCATCCAGTTCTTCTT 413 Query 419 TTTGGCACTCATCGGAATAACAGCGAACCAAGGGTTTTACTTGTTGGGACTGGACAACAC 478 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 414 TTTGGCACTCATAGGAATAACAGCGAACCAAGGATTTTACTTGTTGGGACTGGACAACAC 473 Query 479 TTCACCAACATTTGCTTCTTCCATGCAAAACTCTGTTCCCGCCATTACCTTTCTCATGGC 538 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 474 TTCACCAACATTTGCTTCCTCCATGCAAAACTCTGTTCCCGCCATTACCTTTCTCATGGC 533 Query 539 TGCTCTTCTCAGGATTGAGAAAGTAAGAATAAACAGAAGAGACGGTATCTCCAAAGTCTT 598 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 534 TGCTCTTCTCAGGATTGAGAAAGTAAGAATAAACAGAAGAGACGGTATCTCCAAAATCTT 593 Query 599 AGGAACAGCTCTTTGTGTCGCCGGAGCTTCTGTCATCACTCTCTACAAGGGTCCAACCAT 658 |||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||| Sbjct 594 AGGAACAGCTCTTTGTGTCGCCGGAGCTTCCGTCATCACCCTCTATAAAGGTCCAACCAT 653 Query 659 CTACACCCCGACCAGCCACCTCCACACTCATCTACTCACCACAAACTCCGCAGTCTTAAC 718 |||||| ||| | |||||||||||| ||||||||||||||||||||||||| |||||| | Sbjct 654 CTACACTCCGGCTAGCCACCTCCACGCTCATCTACTCACCACAAACTCCGCCGTCTTAGC 713 Query 719 GCCTTTAGGAGACGCCGCGCCTAAAAACTGGACCCTTGGTTGTATCTACCTAATCGGTCA 778 ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 714 GCCGCTAGGAAACGCCGCGCCTAAAAACTGGACCCTTGGTTGCATCTACCTAATCGGTCA 773 Query 779 CTGCCTCTCGTGGTCAGGCTGGCTCGTTTTCCAAGCTCCGGTTCTTAAATCTTACCCGGC 838 ||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| || || Sbjct 774 CTGTCTCTCGTGGTCAGGCTGGCTTGTTTTCCAAGCTCCGGTTCTTAAGTCTTATCCAGC 833 Query 839 GAGGCTCTCGGTTACGTCTTACACTTGTTTCTTCGGGATCATTCAGTTCTTGATCATCGC 898 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 834 GAGGCTCTCGGTTACGTCTTACACTTGTTTCTTCGGAATCATTCAGTTCTTGATCATTGC 893 Query 899 TGCTTTCTGTGAAAGAGAATCTCAGGCGTGGGTTTTTCACTCCGGTTGGGAGCTTTTCAC 958 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 894 TGCTTTCTGTGAAAGAGATTCTCAGGCTTGGGTTTTTCACTCCGGTTGGGAGCTTTTCAC 953 Query 959 CATCCTCTACGCCGGAATCGTAGCGTCTGGAATCGCGTTTGCCGTTCAGATTTGGTGTAT 1018 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 954 CATCCTCTACGCCGGAATCGTAGCGTCTGGAATCGCGTTTGCGGTTCAGATTTGGTGTAT 1013 Query 1019 TGACAGAGGAGGTCCAGTCTTCGTTGCTGTTTACCAACCTGTTCAGACTCTTGTCGTTGC 1078 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1014 TGACAGAGGGGGTCCAGTCTTCGTTGCTGTTTACCAGCCTGTTCAGACTCTTGTCGTTGC 1073 Query 1079 GATCATGGCTTCGATTGCGTTAGGCGAAGAGTTTTACTTGGGCGGGATTATTGGAGCGGT 1138 |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1074 GATCATGGCTTCTATTGCGTTAGGCGAAGAATTTTATTTGGGCGGGATTATTGGAGCGGT 1133 Query 1139 CTTGATCATAGCGGGACTTTACTTCGTATTGTACGGTAAGAGCGAAGAGAGGAAATTTGC 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1134 CTTGATCATAGCGGGACTTTACTTCGTATTGTACGGTAAGAGCGAAGAGAGGAAATTTGC 1193 Query 1199 AGCGCTAGAGAAGGCAACAATCCAGTCCTCCGCGGAGCATGGTATCGAACGTGCACCTGT 1258 |||||| ||||||||| | |||||||||||||||||||||||||| |||||||||||||| Sbjct 1194 AGCGCTTGAGAAGGCAGCGATCCAGTCCTCCGCGGAGCATGGTATTGAACGTGCACCTGT 1253 Query 1259 TTCTCGCAACTCCATCAAGTCGTCCATCACAACTCCACTACTCCATCAGTCAACGGACAA 1318 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1254 TTCTCGCAACTCCATCAAGTCGTCCATCACAACACCACTACTCCATCAGTCAACGGACAA 1313 Query 1319 CGTTTGACTAATT-GGACACATCTTTCTCCAGCTAATAATTACAAATGCCATTACCCAAT 1377 ||||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 1314 TGTTTGACTACTTTGGACAAATCACTCTCCAGCTAATAATTACAAATGCCATTACCCAAT 1373 Query 1378 TAAAAGGGAAAAATGGTGTGCCGTTGTGTTTTATGGCTTTTGTGTCTGtttttttttttA 1437 |||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| ||| Sbjct 1374 TAAAAGGGAACAATGGTGTGCCGTTGTGTTTTATGACTTTTGTGTCTGCTTTTTTTCTTA 1433 Query 1438 GTGTTTTCTCT-CTTTTT-------AA----TTATTAATTACCTAAGAAAGGTTTTTGAA 1485 ||||||||||| |||||| || ||||||||||||||||||||||||||||| Sbjct 1434 GTGTTTTCTCTTCTTTTTTTTTTCTAAAAAATTATTAATTACCTAAGAAAGGTTTTTGAA 1493 Query 1486 GAAAGGaaaaaaaaaaaaTGGTGGATGAGACATCATTGTTCatgaggatgatgatgatga 1545 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1494 GAAAGGAAAAAAAA----TGGTGGATGAGACATCATTGTTCATGAGGATGATGATGATGA 1549 Query 1546 t-a--gtgatgaACAAGACTATGTGGGAGCTTTGGATTGAGACTTTTCTATATATAATAT 1602 | | |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1550 TGATAGTGATGAAGAAGACTATGTGGGAGCTTTGGATTGAGACTTTTCTATATATAATAT 1609 Query 1603 CTGGCTGATATATTAGTGCCAtttttt-t-ACATTTCTTGTGGGGTTTTTCTTTCCTTTT 1660 ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 1610 CTGGCTGATATATTAGTGCCATTTTTTCTTACATTTCTTGTGGGGTTTTTCTTTCCTTT- 1668 Query 1661 CGATCATCAATAGAATGTTATAATTTGCATTTATGATCTTTAGTAATTATCACTGTCGGG 1720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1669 --ATCATCAATAGAATGTTATAATTTGCATTTATGATCTTTAGTAATTATCACTGTCGGG 1726 Query 1721 GAT 1723 ||| Sbjct 1727 GAT 1729 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86897143395 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5