BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476701 Length=1083 Score E Sequences producing significant alignments: (Bits) Value AT1G75540.1 | Symbols: STH2 | salt tolerance homolog2 | chr1:28... 1552 0.0 > AT1G75540.1 | Symbols: STH2 | salt tolerance homolog2 | chr1:28366027-28367652 FORWARD LENGTH=1282 Length=1282 Score = 1552 bits (840), Expect = 0.0 Identities = 1039/1125 (92%), Gaps = 54/1125 (5%) Strand=Plus/Plus Query 1 CGATCGATGAAGATCAGGTGCGACGTCTGCGACAAAGAAGAAGCGTCGGTGTTTTGTACC 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 27 CGATCGATGAAGATCAGGTGCGACGTCTGCGATAAAGAAGAAGCGTCGGTGTTTTGCACG 86 Query 61 GCCGACGAAGCATCTCTCTGCGGCGGCTGCGACCACCAAGTCCACCACGCTAACAAActc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 87 GCCGACGAAGCATCTCTCTGCGGCGGCTGCGACCACCAAGTCCACCACGCTAACAAACTC 146 Query 121 gcctctaaacatctccgtttctctctcctctatccttcttcttccaacaactcctctcct 180 ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 147 GCCTCTAAACATCTCCGTTTCTCTCTCCTTTATCCTTCTTCTTCCAACACCTCCTCTCCT 206 Query 181 ctctGCGACATCTGTCAGGATAAAAAAGCCCTGTTGTTTTGTCAACAAGATAGAGCTATT 240 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 207 CTCTGCGACATCTGTCAGGATAAAAAAGCTCTGTTGTTCTGTCAACAAGATAGAGCTATT 266 Query 241 TTATGCAAAGATTGTGATTCATCGATCCACGCAGCGAACGAACACACAAAGAAACACGAT 300 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 267 TTATGCAAAGATTGCGATTCATCGATCCACGCTGCGAACGAACACACAAAGAAACACGAT 326 Query 301 AGGTTTCTTCTTACAGGGGTTAAGCTCTCTGCTACATCTTCTGTTTACAAACCTACTTC- 359 |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 327 AGGTTTCTTCTTACAGGGGTTAAGCTCTCTGCAACATCGTCTGTTTACAAACCTACTTCG 386 Query 360 AGAG-T-CTTCTTCTTC---AAGCAACCAAGATCTCTCTGTTCCTGGATCATCAATCTCT 414 | | | |||||||||| ||||||||||||| ||||||| |||||||||||||||||| Sbjct 387 AAATCTTCTTCTTCTTCTTCAAGCAACCAAGATTTCTCTGTCCCTGGATCATCAATCTCT 446 Query 415 AATC-T--TCCTCTCAAGAAACCTTTCTCAGTTCCTCCTCAGAGCAACAACAACTCCAAG 471 |||| | |||||||||||||||| |||||| |||||||||||||||||| | Sbjct 447 AATCCTCCTCCTCTCAAGAAACCTCTCTCAGCTCCTCCTCAGAGCAACAA---------G 497 Query 472 ATCCAACCCTTTTCGAAGATCAGCGGCGGTGATGCGGCGGTGAATCAGTGGGGATCCACA 531 |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 498 ATCCAACCCTTTTCGAAGATCAACGGCGGTGATGCGTCGGTGAATCAGTGGGGATCCACA 557 Query 532 AGCACGATTTCAGAGTATTTGATCGATACGTTACCTGGTTGGCACGTTGAGGATTTCCTC 591 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 558 AGCACGATTTCTGAGTATTTGATGGATACGTTACCTGGTTGGCACGTTGAGGATTTCCTC 617 Query 592 GATTCCTCTCTTCCTACTTTTGGTTTCACCAAGAGTGGTGATGATGATGGAGTGTTACCA 651 ||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||| Sbjct 618 GATTCCTCTCTTCCTACTTATGGTTTCTCTAAGAGTGGTGATGATGATGGAGTGTTACCA 677 Query 652 TATATGGAAGCAGAAGATGACAACA-C--TAAGAGAaacaacaacaacaacaa------- 701 ||||||||| ||||||||||||||| | |||||||||||||||||||||||| Sbjct 678 TATATGGAACCAGAAGATGACAACAACACTAAGAGAAACAACAACAACAACAACAACAAC 737 Query 702 --------TACAGTGTCACTTCCATCTAAGAATTTAGGGATTTGGGTCCCTCAGATTCCA 753 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 738 AACAACAATACAGTGTCACTTCCATCTAAGAATTTAGGGATTTGGGTCCCTCAGATTCCA 797 Query 754 CAAACTCTTCCTTCTTCATACCCAAATCAATACTTTTCTCAAGACAACAACAATACACAG 813 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 798 CAAACTCTTCCTTCTTCATACCCAAATCAATACTTTTCTCAAGACAACAACA-TACA--G 854 Query 814 TTTGGGATGTACAACAAAGAAACATCACCAGAAGTAGTGTCTTTTGCTCCATTACAAAAC 873 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 855 TTTGGGATGTACAACAAAGAAACATCACCAGAAGTAGTGTCTTTTGCTCCAATACAAAAC 914 Query 874 ATGAAACAACAAGGACAGAACAACAAGAGATGGTATGATGATGGTGGCTTCACTGTCCCA 933 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 915 ATGAAACAACAAGGACAGAACAACAAGAGATGGTATGATGATGGTGGCTTCACTGTCCCA 974 Query 934 CAGATTACTCCTCCTC-T-TT-CTTCTAATAAAAAGTTTAGATCTTTCTGGTAATTT-AC 989 ||||| |||||||||| | || ||||||||||||||||||||||||||||||||||| || Sbjct 975 CAGATCACTCCTCCTCCTCTTTCTTCTAATAAAAAGTTTAGATCTTTCTGGTAATTTTAC 1034 Query 990 TATCTCCCTAAATGGGGC--TTTT------GTTTGTTTGTTTCTCC---ATTTCTCTCAA 1038 ||||||||||||||||| |||| |||||||||||||||| ||||||| ||| Sbjct 1035 TATCTCCCTAAATGGGGGAGTTTTTTTTTTGTTTGTTTGTTTCTCCTTCATTTCTCCCAA 1094 Query 1039 CTTCGATCTTAATAGAATTAGGCTCTCTCTATTTTTGTGTTCTGT 1083 ||| ||||| |||||||||||||||||||| |||||||||||||| Sbjct 1095 CTTTGATCTCAATAGAATTAGGCTCTCTCTTTTTTTGTGTTCTGT 1139 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53061976065 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5