BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476728 Length=546 Score E Sequences producing significant alignments: (Bits) Value AT1G75810.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 649 0.0 > AT1G75810.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:28461664-28462366 FORWARD LENGTH=703 Length=703 Score = 649 bits (351), Expect = 0.0 Identities = 377/390 (97%), Gaps = 0/390 (0%) Strand=Plus/Plus Query 27 ATGTGTCTCATGGCGTTATCCGACGCGGTTCTCGGGAATCTCGCGACGATCTACGTGGCG 86 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 84 ATGTGTCTCATGGCGTTATCCGACGCGGTTCTCGGGAATCTCGCGACGATCTACGTGGCG 143 Query 87 GTGATTATCGCGATTAAGGCCTACGGATTAATCACCGGGAGGAGTTTCAGTGCAGGATTC 146 ||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||| Sbjct 144 GTGATTATCGCGATTAAAGCCTACGGATTAATCACCGGGAGGAGTTTCAGCGCTGGATTC 203 Query 147 GTCGTCGTCGTTTCGATTACGGCGGTCGGTGTTTTGCTTGCGGTTACGCTTGCTTGGGAT 206 ||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| Sbjct 204 GTCGTCGTCGTTTCGATTACGGCAGTTGGTGTTTTGCTTGCAGTTACGCTTGCTTGGGAT 263 Query 207 GTGTCTCGTAGAGCAGCGGATGCGGTTTCGCGGTACAATCGCGTTGGTGGTGAGGAGGAT 266 |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||| Sbjct 264 GTGTCTCGTAGAGCAGCGGAGGCGGTTTCTCGGTACAATCGTGTTGGTGGTGAGGAAGAT 323 Query 267 CTTAGCCACCACCGTCACCATCACGACGGTGGTGCGATTTGTAAAGGAGGGATTTGCTGG 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 324 CTTAGCCACCACCGTCACCATCACGACGGTGGTGCGATTTGTAAAGGAGGGATTTGCTGG 383 Query 327 CACGGCGTTGCGGTTCGGTCACCGGCTTCACAGGTTCGATTTAGGCTTCCACAACATATA 386 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 384 CACGGCGTTGCGGTTCGGTCTCCGGCTTCACAGGTTCGATTTAGGCTTCCACAACATATA 443 Query 387 CCCTACGGTGCTTTCTGAGTATATAATCTT 416 || ||||||||||||||||||||||| ||| Sbjct 444 CCTTACGGTGCTTTCTGAGTATATAAACTT 473 Score = 158 bits (85), Expect = 7e-38 Identities = 100/107 (93%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 442 ATGTTGATGAGGAATAAGGTAATGGTGTTCTTCTTCTTGTAAGTTGGAAAGTTTCT-TT- 499 ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | || Sbjct 560 ATGATGATGAGGAATAAGGTAATGGTGTTCTTCTTCTTGTAAGTTGGAAGGTTTTTGTTT 619 Query 500 GTATTGATATGTTGTAAAATCTGATAGTGATTATGATGATTATAGAT 546 ||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct 620 GTATTGATATGTTGTAAAATCGGATAGTGATTGTGATGATTATAGAT 666 Score = 54.7 bits (29), Expect = 9e-07 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 417 TTTTGACTTTTGTGAAGTAGATAACATGT 445 ||||||||||||||||||||||||||||| Sbjct 491 TTTTGACTTTTGTGAAGTAGATAACATGT 519 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26171990587 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5