BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476728

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G75810.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   649    0.0  


> AT1G75810.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant 
structures; EXPRESSED DURING: 15 growth stages; Has 13 Blast 
hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; 
Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:28461664-28462366 
FORWARD LENGTH=703
Length=703

 Score =  649 bits (351),  Expect = 0.0
 Identities = 377/390 (97%), Gaps = 0/390 (0%)
 Strand=Plus/Plus

Query  27   ATGTGTCTCATGGCGTTATCCGACGCGGTTCTCGGGAATCTCGCGACGATCTACGTGGCG  86
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  84   ATGTGTCTCATGGCGTTATCCGACGCGGTTCTCGGGAATCTCGCGACGATCTACGTGGCG  143

Query  87   GTGATTATCGCGATTAAGGCCTACGGATTAATCACCGGGAGGAGTTTCAGTGCAGGATTC  146
            ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct  144  GTGATTATCGCGATTAAAGCCTACGGATTAATCACCGGGAGGAGTTTCAGCGCTGGATTC  203

Query  147  GTCGTCGTCGTTTCGATTACGGCGGTCGGTGTTTTGCTTGCGGTTACGCTTGCTTGGGAT  206
            ||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct  204  GTCGTCGTCGTTTCGATTACGGCAGTTGGTGTTTTGCTTGCAGTTACGCTTGCTTGGGAT  263

Query  207  GTGTCTCGTAGAGCAGCGGATGCGGTTTCGCGGTACAATCGCGTTGGTGGTGAGGAGGAT  266
            |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||
Sbjct  264  GTGTCTCGTAGAGCAGCGGAGGCGGTTTCTCGGTACAATCGTGTTGGTGGTGAGGAAGAT  323

Query  267  CTTAGCCACCACCGTCACCATCACGACGGTGGTGCGATTTGTAAAGGAGGGATTTGCTGG  326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  324  CTTAGCCACCACCGTCACCATCACGACGGTGGTGCGATTTGTAAAGGAGGGATTTGCTGG  383

Query  327  CACGGCGTTGCGGTTCGGTCACCGGCTTCACAGGTTCGATTTAGGCTTCCACAACATATA  386
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  384  CACGGCGTTGCGGTTCGGTCTCCGGCTTCACAGGTTCGATTTAGGCTTCCACAACATATA  443

Query  387  CCCTACGGTGCTTTCTGAGTATATAATCTT  416
            || ||||||||||||||||||||||| |||
Sbjct  444  CCTTACGGTGCTTTCTGAGTATATAAACTT  473


 Score =  158 bits (85),  Expect = 7e-38
 Identities = 100/107 (93%), Gaps = 2/107 (2%)
 Strand=Plus/Plus

Query  442  ATGTTGATGAGGAATAAGGTAATGGTGTTCTTCTTCTTGTAAGTTGGAAAGTTTCT-TT-  499
            ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | || 
Sbjct  560  ATGATGATGAGGAATAAGGTAATGGTGTTCTTCTTCTTGTAAGTTGGAAGGTTTTTGTTT  619

Query  500  GTATTGATATGTTGTAAAATCTGATAGTGATTATGATGATTATAGAT  546
            ||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct  620  GTATTGATATGTTGTAAAATCGGATAGTGATTGTGATGATTATAGAT  666


 Score = 54.7 bits (29),  Expect = 9e-07
 Identities = 29/29 (100%), Gaps = 0/29 (0%)
 Strand=Plus/Plus

Query  417  TTTTGACTTTTGTGAAGTAGATAACATGT  445
            |||||||||||||||||||||||||||||
Sbjct  491  TTTTGACTTTTGTGAAGTAGATAACATGT  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26171990587


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5