BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476731
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75830.1 | Symbols: LCR67, PDF1.1 | low-molecular-weight cys... 538 2e-152
AT5G44430.1 | Symbols: PDF1.2c | plant defensin 1.2C | chr5:179... 398 3e-110
AT2G26010.1 | Symbols: PDF1.3 | plant defensin 1.3 | chr2:11087... 296 1e-79
AT2G26020.1 | Symbols: PDF1.2b | plant defensin 1.2b | chr2:110... 287 6e-77
> AT1G75830.1 | Symbols: LCR67, PDF1.1 | low-molecular-weight cysteine-rich
67 | chr1:28472357-28472891 FORWARD LENGTH=428
Length=428
Score = 538 bits (291), Expect = 2e-152
Identities = 383/425 (90%), Gaps = 16/425 (4%)
Strand=Plus/Plus
Query 1 CTAAAACATATACACATTGAAAACAACTAAGCATAAAAAGTTAAA-AACTAGTCATGGCT 59
|||||||||||| |||| ||||||||||||| | | |||| || |||||||||||
Sbjct 4 CTAAAACATATATACATCGAAAACAACTAAG--T----A--TAAACAA-TAGTCATGGCT 54
Query 60 AAGTCTGCTACCATCGTTACCCtttttttCGCTGCTCTTGTTTTCTTTGCTGCTCTTGAA 119
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 55 AAGTCTGCTACCATCGTTACTCTTTTCTTCGCTGCTCTTGTTTTCTTTGCTGCTCTTGAA 114
Query 120 GCGCCAACAATGGTGGAAGCACAGAAATTATGCGAGAGGCCAAGTGGAACATGGTCAGGA 179
|| || | |||||||||||||||| || ||||||||||||||||| |||||||| |||
Sbjct 115 GCACCGATGGTGGTGGAAGCACAGAAGTTGTGCGAGAGGCCAAGTGGGACATGGTCCGGA 174
Query 180 GTTTGCGGAAACAATAATGCATGCAAGAATCAGTGCATTAGA-CTTGAGAAAGCACGACA 238
||||||||||||| ||| || ||||||||||||||||||| | |||||||||||||||||
Sbjct 175 GTTTGCGGAAACAGTAACGCGTGCAAGAATCAGTGCATTA-ACCTTGAGAAAGCACGACA 233
Query 239 TGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGTATCTGCTACTTCCCATGTTAATC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGTATCTGCTACTTCCCATGTTAATC 293
Query 299 TACCAAAAACTCTTAGTGCTTAATTATAA-GTGTA-ATTT-TATAAAATAAGTATGTGTC 355
|||||| | |||||| ||||||||||||| |||| |||| ||| |||||||||||||||
Sbjct 294 TACCAAGAGCTCTTAATGCTTAATTATAAAGTGTGTATTTCTATTAAATAAGTATGTGTC 353
Query 356 ACTCTATAAGTGGTATTATGACATGTACCAGTTATGTTTATGTTGCTTTGTTATAATAAG 415
||||||| || ||| |||||||||||||||| |||||| ||||||||||||| |||||||
Sbjct 354 ACTCTATGAGAGGTCTTATGACATGTACCAGATATGTT-ATGTTGCTTTGTTTTAATAAG 412
Query 416 ATAAA 420
|||||
Sbjct 413 ATAAA 417
> AT5G44430.1 | Symbols: PDF1.2c | plant defensin 1.2C | chr5:17908945-17909507
REVERSE LENGTH=453
Length=453
Score = 398 bits (215), Expect = 3e-110
Identities = 312/357 (87%), Gaps = 14/357 (4%)
Strand=Plus/Plus
Query 49 TAGTCATGGCTAAGTCTGCTACCATCGTTACCCtt-tttttCGCTGCTCTTGTTTTCTTT 107
|||||||||||||||||||||||||| | | |||| ||||||||||||||||| |||||
Sbjct 59 TAGTCATGGCTAAGTCTGCTACCATCATCA-CCTTCCTTTTCGCTGCTCTTGTTCTCTTT 117
Query 108 GCTGCTCTTGAAGCGCCAACAATGGTGGAAGCACAGAAATTATGCGAGAGGCCAAGTGGA 167
|||||| ||||||| ||||||||||||||||||||||| || ||||||| |||||||||
Sbjct 118 GCTGCTTTTGAAGCACCAACAATGGTGGAAGCACAGAAGTTGTGCGAGAAGCCAAGTGGG 177
Query 168 ACATGGTCAGGAGTTTGCGGAAACAATAATGCATGCAAGAATCAGTGCATTAGA-CTTGA 226
||||||||||| ||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 178 ACATGGTCAGGCGTTTGCGGAAACAGTAATGCATGCAAGAATCAGTGCATTA-ACCTTGA 236
Query 227 GAAAGCACGACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGTATCTGCTACTT 286
| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 237 GGGAGCAAAACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGTATCTGTTACGT 296
Query 287 CCCATGTTAATCTACCAAAAACTCTTAG-TGCTTAATTATAAGTGTAATTTTA-TA-AAA 343
||||||||||||||||||||| |||| | ||||| || | ||||| ||||| | |||
Sbjct 297 CCCATGTTAATCTACCAAAAA-TCTTTGGTGCTTGATCGTGTGTGTA-TTTTACTTTAAA 354
Query 344 TAAGTATGTGTCACTCTATAAGTGG-TATTATGACATGTACCAGTTATGTTTATGTT 399
||||| |||||||||||| |||| | |||||||||| | | | |||||||||||
Sbjct 355 TAAGTCGGTGTCACTCTATGAGTGACT-TTATGACATGCAT-A-T-ATGTTTATGTT 407
> AT2G26010.1 | Symbols: PDF1.3 | plant defensin 1.3 | chr2:11087348-11087944
FORWARD LENGTH=495
Length=495
Score = 296 bits (160), Expect = 1e-79
Identities = 225/256 (88%), Gaps = 6/256 (2%)
Strand=Plus/Plus
Query 52 TCATGGCTAAGTCTGCTACCATCGTTACCCttt--ttttCGCTGCTCTTGTTTTCTTTGC 109
||||||||||||||||| ||||| | | |||| | ||||||||||||||| |||||||
Sbjct 62 TCATGGCTAAGTCTGCTGCCATC-AT-CACTTTCCTCTTCGCTGCTCTTGTTCTCTTTGC 119
Query 110 TGCTCTTGAAGCGCCAACAATGGTGGAAGCACAGAAATTATGCGAGAGGCCAAGTGGAAC 169
|||| ||||||| || | |||||||||||||||||| || ||||||| ||||||||| ||
Sbjct 120 TGCTTTTGAAGCACCGATAATGGTGGAAGCACAGAAGTTGTGCGAGAAGCCAAGTGGTAC 179
Query 170 ATGGTCAGGAGTTTGCGGAAACAATAATGCATGCAAGAATCAGTGCATTAGA-CTTGAGA 228
|||||||||||||||||||||| ||||| ||||||||||||||||||| | ||||||
Sbjct 180 TTGGTCAGGAGTTTGCGGAAACAGCAATGCGTGCAAGAATCAGTGCATTA-ACCTTGAGG 238
Query 229 AAGCACGACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGTATCTGCTACTTCC 288
||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 239 GGGCAAAACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAGTGTATCTGTTACTTCC 298
Query 289 CATGTTAATCTACCAA 304
|||||||| |||||||
Sbjct 299 CATGTTAAGCTACCAA 314
> AT2G26020.1 | Symbols: PDF1.2b | plant defensin 1.2b | chr2:11089250-11089597
FORWARD LENGTH=274
Length=274
Score = 287 bits (155), Expect = 6e-77
Identities = 218/248 (88%), Gaps = 6/248 (2%)
Strand=Plus/Plus
Query 52 TCATGGCTAAGTCTGCTACCATCGTTACCCttt-ttttCGCTGCTCTTGTTTTCTTTGCT 110
|||||||||||| |||| ||||| | | ||||| | | ||||||||||||| |||||||
Sbjct 30 TCATGGCTAAGTTTGCTTCCATCATCA-CCTTTATCTACGCTGCTCTTGTTCTCTTTGCA 88
Query 111 GCTCTTGAAGCGCCAACAATGGTGGAAGCACAGAAATTATGCGAGAGGCCAAGTGGAACA 170
||| |||||| ||||||||||||||||||||||| || ||||||| ||||||||| ||
Sbjct 89 GCTTTTGAAGTACCAACAATGGTGGAAGCACAGAAGTTGTGCGAGAAGCCAAGTGGTACT 148
Query 171 TGGTCAGGAGTTTGCGGAAACAATAATGCATGCAAGAATCAGTGCATTAGA-CTTG-AGA 228
|||||||||||||||||||||| ||||||||||||||||||||||||| | |||| ||
Sbjct 149 TGGTCAGGAGTTTGCGGAAACAGCAATGCATGCAAGAATCAGTGCATTA-ACCTTGAAG- 206
Query 229 AAGCACGACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGTATCTGCTACTTCC 288
|||| |||||||||||||||||||||||||||||||||||| |||||||| ||| |||
Sbjct 207 GAGCAAAACATGGATCTTGCAACTATGTCTTCCCAGCTCACAAGTGTATCTGTTACGTCC 266
Query 289 CATGTTAA 296
||||||||
Sbjct 267 CATGTTAA 274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19906028604
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5