BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476750
Length=1595
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76010.1 | Symbols: | Alba DNA/RNA-binding protein | chr1:2... 2145 0.0
AT1G20220.1 | Symbols: | Alba DNA/RNA-binding protein | chr1:7... 78.7 2e-13
> AT1G76010.1 | Symbols: | Alba DNA/RNA-binding protein | chr1:28528077-28530790
REVERSE LENGTH=1636
Length=1636
Score = 2145 bits (1161), Expect = 0.0
Identities = 1508/1659 (91%), Gaps = 90/1659 (5%)
Strand=Plus/Plus
Query 1 GCTTTGCATCAAAAGCTTCTT--CTTAGGGCGTATAAAGGAGAAGAAACAAAGCCGTACA 58
||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 4 GCTTTGCATCAAATTCTTCTTCCCTTAGGGCGTATCAAGGAGAAGAAACAAAGCCGTACA 63
Query 59 AAGAGGGCTCTTCCTGGGCACAAACAAAAACCACCATTTTCGTTTTATCTGAATCTTCGT 118
| |||||||||||||||| | ||| |||||||||||||||||||||||| |||||||||
Sbjct 64 ACGAGGGCTCTTCCTGGG--C-AAC-AAAACCACCATTTTCGTTTTATCTCAATCTTCGT 119
Query 119 CTCTCTCGAAAGATCTAACCACAACTCCTCCTTAAGATGGATAAGTATCAACGAGTGGTG 178
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 CTCTTTCGAAAGATCTAACCACAACAACTCCTTAAGATGGATAAGTATCAACGAGTGGTG 179
Query 179 AAGCCGAAAGCGGATACGCCGATTGATGCGAACGAGATTCGTATCACTAGTCAGGGCAGG 238
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 180 AAGCCGAAAGCGGATACGCCGATTGATGCGAATGAGATTCGTATCACTAGTCAAGGCAGG 239
Query 239 GCACGAAACTACATCACCTATGCGATGACTCTTCTTCAGGAGAAAGGGTCAACTGAAGTT 298
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 240 GCACGAAACTACATCACCTATGCGATGACTCTTCTTCAGGATAAAGGGTCAACTGAAGTT 299
Query 299 GTATTCAAGGCAATGGGAAGAGCTATCAACAAGACTGTGACCATTGTAGAGCTGATTAAG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTATTCAAGGCAATGGGAAGAGCTATCAACAAGACTGTGACCATTGTAGAGCTGATTAAG 359
Query 359 AGAAGGATTCCTGATCTTCATCAGAACACATCTATCGGATCCACAGACATAACAGACACA 418
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 360 AGAAGGATCCCTGATCTTCATCAGAACACATCTATTGGATCCACAGACATCACAGACACA 419
Query 419 TGGGAACCAACAGAGGAAGGCCTTCTACCTTTGGAGACTACAAGGCATGTGTCAATGATA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGGGAACCAACAGAGGAAGGCCTTCTACCTTTGGAGACTACAAGGCATGTGTCAATGATA 479
Query 479 ACCATTATCCTATCCAAGGTTGAGCTTAATACATCCTCTGTTGGGTACCAGTGCCCAATT 538
||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 480 ACCATTACCCTATCCAAGATTGAGCTTAATACCTCCTCTGTTGGGTACCAGTGCCCAATT 539
Query 539 CCTATTGAGATGGTGAAGCCAATGGGCGATATCAATTATGAAGGGCGAGAGGGTTCACCT 598
||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 540 CCTATTGAGTTGGTGAAGCCAATGGGCGATATTGATTATGAAGGACGAGAGGGTTCACCT 599
Query 599 GGTGGCagagggaggggaagaggaagaggaaggggaagaggaagggggcgaggcggcaga 658
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 600 GGTGGCAGAGGGAGGGGAAGAGGAAGAGGAAGGGGAAGAGGAAGGGGGCGAGGTGGCAGA 659
Query 659 ggaaATGCTTATGTGAACGTTGAGCATGAAGATGGAGGTTGGGAACGTGACCAGTCCTAT 718
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 660 GGAAATGCTTATGTGAACGTTGAGCATGAAGATGGAGGTTGGGAACGTGAGCAGTCCTAT 719
Query 719 GGTAGAGGAAGAGGACGTGGCAGAGGACGCAGCAGTCGTGGTCGGGGAAGAGGAGGATAC 778
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 720 GGTAGAGGAAGAGGACGTGGCAGAGGACGCAGCAGTCGTGGTCGTGGAAGAGGAGGATAC 779
Query 779 AATGGTCCTCCAAACGAGTATGATGCACCGCAAGATGGAGGTTACGGTTACGATGCTCCT 838
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 780 AATGGTCCTCCGAATGAGTATGATGCACCACAAGATGGAGGTTACGGTTACGATGCTCCT 839
Query 839 CCTCATGAACACCGTGGATATGATGACCGTGGTGGTTACGATGCCCCTCCTCAGGGCCGC 898
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 C---ATGAACACCGTGGATATGATGACCGTGGTGGTTATGATGCCCCTCCTCAGGGCCGT 896
Query 899 GGTGGTTATGATGGTCCCACTCAGGGCCGCGGCGGTTATGATGGTCCTCCTCAGGGCCGC 958
|||||||| |||||||| |||||| ||||| ||||| |||||||||| |||| |||
Sbjct 897 GGTGGTTACGATGGTCC---TCAGGGTCGCGGTGGTTACGATGGTCCTC---AGGGTCGC 950
Query 959 GGCGGTTATGATGGTCCTCCTCAGGGCCGCGGCGGTTATGATGGTCCTCCTCAGGGCCGC 1018
| |||||||||||||||||||||||||| || ||||||||||||||| |||| |||||
Sbjct 951 CGTGGTTATGATGGTCCTCCTCAGGGCCGTGGTGGTTATGATGGTCCTTCTCAAGGCCGT 1010
Query 1019 GGCGGTTATGATGGTCCTTCTCAGGGCCGCGGCGGTTATGATGGTCCTCCTCAAGGCCGT 1078
|| |||||||||||||||||||||||||| || ||||||||||||||| |||| ||||||
Sbjct 1011 GGTGGTTATGATGGTCCTTCTCAGGGCCGTGGTGGTTATGATGGTCCTTCTCAGGGCCGT 1070
Query 1079 GG-GC----G-TGG-----A----CG----CG-G-ACG----CG-G-AAGGGGAGGTCGT 1111
|| | | ||| | || || | ||| || | ||||||||| |||
Sbjct 1071 GGTGGTTATGATGGTCCTCAGGGTCGTGGGCGTGGACGTGGACGTGGAAGGGGAGGACGT 1130
Query 1112 GGAAGAGGAGGAGGTCGTGGTGGTGGTGGAGGATTCAACAACAGATCAGATGGACCACCA 1171
|||||||||||||| |||||||||| ||| || |||||||||||||||||||||||||||
Sbjct 1131 GGAAGAGGAGGAGGACGTGGTGGTGATGGTGGTTTCAACAACAGATCAGATGGACCACCA 1190
Query 1172 ATCCAGGCAGCTGCTTGAGAGTGAGGTTTCTTTTACACAAACATaaaaagaa-aaaa--G 1228
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
Sbjct 1191 GTCCAGGCAGCTGCTTGAGAGTGAGGTTTCTCTTACACAAACATAAAAAGAAGAAAAAAG 1250
Query 1229 CCCAAGTCGTTGGATGttttttttttCTATCTCCTTGTTCACTCTCTTTCTTTCTATGTT 1288
|||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||
Sbjct 1251 CCCAAGTCGTTGGATGTTTTTTTT--CTATCTCCTTGTTCTCTCACTTTCTTTCTATGTT 1308
Query 1289 TGCTTCTTCTGTCCATCAAGAAGACATGTTTGTCATAAGTGTATCTCTTTCCC-TT-TTC 1346
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||
Sbjct 1309 TGCTTCTTCTGTCCATCAAGAAGACATGTTTGCCATAAGTGTATCTCATTCCCCTTCTTT 1368
Query 1347 TTT----A-T--CCATTGATTCACAGT-TT---G-TTGT---CTGTTTTGTTTAGAGTCG 1391
||| | | ||||||||| ||||| || | |||| ||||||||||||||||||
Sbjct 1369 TTTTTTTACTATCCATTGATTGACAGTGTTTTAGCTTGTGGTCTGTTTTGTTTAGAGTCG 1428
Query 1392 CTTAGGGTATAATATATGTTCAATTTATTT-ATGGTTGG--GT--T-TT---T----GTT 1438
|||||| | | |||||||||||||||||| |||||||| || | || | |||
Sbjct 1429 CTTAGG--A-A-TATATGTTCAATTTATTTTATGGTTGGTCGTCGTCTTGGGTTTTTGTT 1484
Query 1439 AGAGAAGAACTACTGAGGCATCCtcttttcttt-cttttt-cctttctgttttgtagttt 1496
||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||
Sbjct 1485 AGAGAAGAACTACTGAGGCATCCTCTTTTCTTTTCTTTTTTCCT--CTGTTTTGTAGTTT 1542
Query 1497 tgtttAGAGGTGAGAGTGAGACACAGTTTGGACAAATTAACTCTTTTCTTCTTTGGTTAT 1556
||||||| | ||||||||||||||||||||||||||||| |||||||||| | ||||||
Sbjct 1543 TGTTTAG-G-TGAGAGTGAGACACAGTTTGGACAAATTACCTCTTTTCTT-T--GGTTAT 1597
Query 1557 CAGTTTTAATGTGATGGAACAGTTGATTCTTTTATTTCC 1595
|||||||||||||||||||||||||||||||||||||||
Sbjct 1598 CAGTTTTAATGTGATGGAACAGTTGATTCTTTTATTTCC 1636
> AT1G20220.1 | Symbols: | Alba DNA/RNA-binding protein | chr1:7004879-7007651
REVERSE LENGTH=1387
Length=1387
Score = 78.7 bits (42), Expect = 2e-13
Identities = 68/80 (85%), Gaps = 3/80 (4%)
Strand=Plus/Plus
Query 1055 TATGATGGTCCTCCTCAAGGCCGTGGGCGTGGACGCGGACGCGGAAGGGGAGGTCGTGGA 1114
|||||||||||||| | | | || |||||||| || || ||||||||||||||||||
Sbjct 1057 TATGATGGTCCTCCGC--CTCAG-GGACGTGGACGTGGCCGTGGAAGGGGAGGTCGTGGA 1113
Query 1115 AGAGGAGGAGGTCGTGGTGG 1134
||||||||||| ||||||||
Sbjct 1114 AGAGGAGGAGGCCGTGGTGG 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78764655105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5