BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476761
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76110.1 | Symbols: | HMG (high mobility group) box protein... 1700 0.0
> AT1G76110.1 | Symbols: | HMG (high mobility group) box protein
with ARID/BRIGHT DNA-binding domain | chr1:28555042-28557586
REVERSE LENGTH=1383
Length=1383
Score = 1700 bits (920), Expect = 0.0
Identities = 1073/1146 (94%), Gaps = 13/1146 (1%)
Strand=Plus/Plus
Query 1 GAATCGTTATCTTTCTCTTCTTTCCTTaaaccaaaa-ccaaaaaagagagaccagacaaa 59
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 GAATCGTTATCTTTCTCTTCTTTCCTTAAACCAAAACCCAAAAAAGAGAGACCAGACAAA 60
Query 60 aaaaaaaacac-acacaacccctcacaaca-a-------c-a-aaaaaaTCTCTCTTTAA 108
|||||||| || | ||| | | || | | | | |||| ||||||| ||
Sbjct 61 AAAAAAAAAACTCCCCAA-CAAAAAAAAGATATCTGTCTCTACTAAAAGTCTCTCTATAG 119
Query 109 CGATGTCATCGGACAACGAATCGACACCGTCTCAGGCGACGGTAGAAATGACCGCAACGT 168
|||||||||||||||||||||||||||||||||| |||||||||||||||| || || |
Sbjct 120 CGATGTCATCGGACAACGAATCGACACCGTCTCAAGCGACGGTAGAAATGATGGCGACTT 179
Query 169 CGCCGGCGAAGATTAAAGAGTATCCAGAACCATTGGCTTCACATGAAGTTGTCGTTAAAG 228
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
Sbjct 180 CGCCGGCGAAGATTAAAGAGTATCCAGAACCATTGGCTTTACATGAAGTTGTCGTCAAGG 239
Query 229 ATTCTTCTGTCTTCTGGGATACTCTCAGGCGATTTCACTCAATTATGTCCACTAAGTTCA 288
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 240 ATTCTTCTGTCTTCTGGGATACTCTCAGGCGGTTTCACTCAATTATGTCCACTAAGTTCA 299
Query 289 TGATTCCTGTGATTGGAGGAAAAGAACTGGATTTGCATGTTTTGTATGTGGAAGTCACGA 348
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 TGATTCCTGTGATTGGAGGAAAAGAACTAGATTTGCATGTTTTGTATGTGGAAGTCACGA 359
Query 349 GGAGGGGAGGTTACGAAAAGGTAGTCGCAGAGAAAAAATGGAGGGAAGTTGGAGGAGTGT 408
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 GGAGGGGAGGTTACGAAAAGGTAGTCGTAGAGAAAAAATGGAGGGAAGTTGGAGGAGTGT 419
Query 409 TTAGATTCTCTGCGACAACAACAAGTGCTTCGTTTGTCTTAAGGAAACATTATCTCAATC 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTAGATTCTCTGCGACAACAACAAGTGCTTCGTTTGTCTTAAGGAAACATTATCTCAATC 479
Query 469 TTCTCTTCCATTACGAACAAGTTCATCTCTTCACTGCTCGTGGTCCTCTTCTTCATCCCA 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTCTCTTCCATTACGAACAAGTTCATCTCTTCACTGCTCGTGGTCCTCTTCTTCATCCCA 539
Query 529 CAGCTACATTTCATGCCAATCCATCAACGAGCAAAGAAATGGCTCTCGTCGAATATACTC 588
||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 540 TAGCTACATTTCATGCAAATCCCTCAACGAGCAAAGAAATGGCGCTCGTCGAATATACTC 599
Query 589 CTCCGAGTATAAGATATAACAATACTCATCATCCTTCTCAAGGTTCGTCGAGTTTCACAG 648
||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||
Sbjct 600 CTCCGAGTATAAGATATCATAATACTCATCCTCCTTCTCAAGGTTCGTCGAGTTTCACAG 659
Query 649 CCATAGGTACAATAGAAGGCAAATTCGATTGTGGTTATCTGGTAAAAGTAAAGTTGGGCT 708
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 660 CCATAGGTACAATAGAAGGCAAATTCGATTGTGGTTATCTGGTAAAAGTTAAGTTGGGCT 719
Query 709 CAGAAATTCTTAACGGCGTGCTTTATCACTCGGCCCAGCCAGGCCCATCATCATCTCCAA 768
|||| |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 720 CAGAGATTCTTAACGGCGTTCTTTATCATTCGGCCCAGCCCGGCCCATCATCATCTCCAA 779
Query 769 GCGCTGATCTAAACGGTGCCGTTGTACCTTATGTTGAAACTGGGAGGAGACGACGTCGTT 828
||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 780 CCGCTGTTCTAAACAATGCCGTTGTACCTTATGTTGAAACTGGGAGGAGACGGCGTCGTT 839
Query 829 TAGGTAAAAGACGAAGAAGCAGACGCAGAGAAGACCCAAATTACCCGAAACCAAACCGGA 888
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 840 TAGGTAAAAGACGAAGAAGCAGACGCAGAGAAGATCCGAATTACCCGAAACCGAACCGGA 899
Query 889 GCGGTTACAATTTCTTCTTTGCTGAGAAGCATTGCAAACTCAAGTCTCTTTATCCCAACA 948
|||||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||
Sbjct 900 GCGGTTACAATTTCTTCTTTGCTGAGAAACATTGCAAGCTCAAATCACTTTATCCCAACA 959
Query 949 AGGAAAGAGAGTTTACGAAAATTATCGGAGAATCGTGGAGTAATCTCTCAACCGAAGAAC 1008
|||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||
Sbjct 960 AGGAGAGAGAGTTTACGAAACTTATCGGAGAATCGTGGAGCAATCTCTCTACCGAAGAAC 1019
Query 1009 GAATGGTTTATCAGGACATTGGATTGAAGGATAAGGAGAGGTATCAGAGGGAGTTGAATG 1068
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1020 GAATGGTTTATCAAGACATTGGATTGAAGGATAAGGAAAGGTATCAGAGGGAGTTGAATG 1079
Query 1069 AGTACAGAGAAACGTTAAGGCTCAGGGATGCTGACATGACAAACGGCAAGTCGTTTTAGG 1128
|||||||||||||||| || || ||||||| ||||||||||||||||||| | |||||||
Sbjct 1080 AGTACAGAGAAACGTTGAGACTTAGGGATGGTGACATGACAAACGGCAAGGCTTTTTAGG 1139
Query 1129 TGATTT 1134
||||||
Sbjct 1140 TGATTT 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59738648550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5