BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476776
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76240.1 | Symbols: | Arabidopsis protein of unknown functi... 1611 0.0
> AT1G76240.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr1:28602811-28603929 REVERSE LENGTH=1119
Length=1119
Score = 1611 bits (872), Expect = 0.0
Identities = 1024/1093 (94%), Gaps = 27/1093 (2%)
Strand=Plus/Plus
Query 1 ctctctc-t-tctctctctcCGCCGAGAATGGTTGGAGTTTTCCGACGATCACTCTCATT 58
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27 CTCTCTCTTCTCTCTCTCTCCGCCGAGAATGGTTGGAGTTTTCCGACGATCACTCTCATT 86
Query 59 CCCTAACAAACCTTGCGGCCGATCATCTCCACCGTCAAAGCCACGTGTCTCTCACCACAC 118
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 87 CCCTAACAAACCTTGCGGCCGATCATCTCCATCGTCAAAGCCACGTGTCTCTCATCACAC 146
Query 119 AAGATCCATCAGTCTCCCCTGCCGATCTCATCCCTTAATCTCCCACGTTAACCACGAGAT 178
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 147 AAGATCCATCAGTCTACCCTGCCGGTCTCATCCCTTAATCTCCCACGTTAACCACGAGAT 206
Query 179 CTCTCAGCTCAAATCCTGGTTCTCTTTCGTAGGAGAAACTCACCGCCGCACCACCTCCTG 238
|||||||||||||||||||||||| |||| |||||||||||| ||||||||||||| ||
Sbjct 207 CTCTCAGCTCAAATCCTGGTTCTCATTCGCCGGAGAAACTCACAGCCGCACCACCTCTTG 266
Query 239 GATCACCGACGGTCTCAGCCTCCTTAAGGACGTTCAAGAAACGCTCGCCGATATACTCCA 298
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 267 GATCACCGACGGTCTCAGTCTCCTCAAGGACGTTCAAGAAACGCTCGCTGATATACTTCA 326
Query 299 GCTCCCACAATCTCAAGAATCTCTACGAAACCGTCCTGTTTTCTTCGAGAATCTTCTAGA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 GCTCCCACAATCTCAAGAATCTCTACGAAACCGTCCTGTTTTCTTCGAGAATCTTCTAGA 386
Query 359 AGATCTTCTCCGATTCGTTGACGCTTACGGTATCTTCCGTACGTCGATCCTCTGCCTCCG 418
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 387 AGATCTTCTCCGATTCGTTGACGCTTACGGAATCTTCCGTACGTCGATCCTCTGCCTCCG 446
Query 419 TGAGCACCAGTCCGCCGCTCAAGTCGCTCTCCGTAAAAAAGACGACCAGAAAATCGCCTC 478
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 447 TGAGCACCAGTCCGCCGCTCAAGTCGCTCTCCGTAAAAAAGACGACGAGAAAATCGCATC 506
Query 479 TTACCTTAAATCTCGCCGATCTCTCGCGAGAGATATCGCGAAACTGACGTCATCTATCCG 538
|||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 507 TTACCTAAAATCTCGCCGATCTCTCGCAAGAGATATCGCGAAACTGACGTCATCGATCCG 566
Query 539 CGAGCCGAAGACGAAACACCAGCACTGCCACGTGGACAACGTTAACGGAACGTACGGTGA 598
||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 567 TGAGCCGAAGACAAAACACCAACACTGCCACGTAGACAACGTTAACGGAACGTACGGTGA 626
Query 599 CGCAGAGCTTGCGTCAGTTATAGGTGACGTCATTGAAGTCACTGTTTTGGTTTCCGTCGC 658
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 627 CGCAGAGCTTGCGTCAGTTATAGGTGACGTCATTGAAGTAACTGTTTTGGTTTCCGTTGC 686
Query 659 TCTCTTTAACGGTGTTCACTTATCTCTCCGAACCAACAAAACGACGCCGTTTATAGGGTT 718
|||||||||||| ||| ||||||||||| || ||| |||||| |||||||||||||||||
Sbjct 687 TCTCTTTAACGGCGTTTACTTATCTCTCAGAGCCACCAAAACAACGCCGTTTATAGGGTT 746
Query 719 TTTGAAACGATCCGAGAAAAAAG-AGAAACTAGACGAAGGAATCGTGgagttgaagcaag 777
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 747 TTTGAAACGATCCGA-AAAAAAGGAGAAACTAGACGAAGGAATCGTGGAGTTGAAGCAAG 805
Query 778 ttgaagagaagagtttggttggtttaagcaagaagaagagcgaagaagtaaagagtttga 837
|||||||||| || ||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 806 TTGAAGAGAAAAGCTTGATTGGTTTAAGCAAGAAGAAGAACGAAGAAGTAAAGAGTTTGA 865
Query 838 tgaagaagaTGATGGAATTGGAGAATTCTATCCAAGAAATCGAATGTGAGAGTGAGAAAG 897
|||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 866 TGAAGAGGATGATGGAATTGGAGAATTCGATCCGTGAAATCGAATGTGAGAGTGAGAAAG 925
Query 898 TGTTTAGGGGTTTGATTAGCACTCGAGTCTCATTGCTTAATGCCCTAACACATTAACTA- 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 TGTTTAGGGGTTTGATTAGCACTCGAGTCTCATTGCTTAATGCCCTAACACATTAACTAA 985
Query 957 T-AT-A-TC--A--cttt--cattctt-tttc-t-tct-ttt---tt-tt--GTCACATT 997
| || | || | |||| | ||||| |||| | ||| ||| || || ||||||||
Sbjct 986 TTATCACTCTCATTCTTTTTC-TTCTTGTTTCCTGTCTATTTGCGTTATTTTGTCACATT 1044
Query 998 ATTTTTATTATTTGTATGAG-TTAACTACATGAAACAAAATAGAAAA-CAATTAAATAAA 1055
|||||||||||||||||||| |||||||||||||| ||||||||||| ||| ||||||||
Sbjct 1045 ATTTTTATTATTTGTATGAGGTTAACTACATGAAAGAAAATAGAAAAACAAATAAATAAA 1104
Query 1056 AGATACTTTACAT 1068
||||||||||||
Sbjct 1105 CGATACTTTACAT 1117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5