BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476789 Length=1827 Score E Sequences producing significant alignments: (Bits) Value AT1G76360.1 | Symbols: | Protein kinase superfamily protein | ... 1358 0.0 > AT1G76360.1 | Symbols: | Protein kinase superfamily protein | chr1:28643038-28646712 REVERSE LENGTH=1888 Length=1888 Score = 1358 bits (735), Expect = 0.0 Identities = 835/883 (95%), Gaps = 7/883 (1%) Strand=Plus/Plus Query 861 AGTGTGAAGTGAGATTCCTAGGGAAGTTTCATCATCCAAATTTGGTGAAGCTCTTGGGTT 920 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 873 AGTGTGAAGTGAGATTCTTAGGGAAGTTTCATCATCCAAATTTGGTGAAGCTCTTGGGTT 932 Query 921 ATTGCTGGGAAGAGAATCAGTTCCTCTTGGTCTATGAGTATTTGCCTAAAGGAAGCCTTG 980 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 933 ATTGCTGGGAAGAGAACCAGTTCCTTTTGGTCTATGAGTATTTGCCTAAAGGAAGCCTTG 992 Query 981 AAAATCACCTCTTTTCAAAAGGAGCAGAGGCATTGCCATGGGACACACGTTTGAAGATAG 1040 ||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||| Sbjct 993 AAAATCACCTCTTCTCAAAAGGAGCAGAGGCATTACCTTGGGATACACGTTTGAAGATAG 1052 Query 1041 CCATTGAAGCAGCTCAAGGACTTACCTTTTTGCATAACTCCGAAAAGAGTGTTATCTACA 1100 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1053 CCATTGAAGCAGCTCAAGGACTTACCTTTTTGCATAACTCCGAGAAGAGTGTTATCTATA 1112 Query 1101 GAGACTTCAAGGCTTCCAATATTCTTCTTGATTCCACCTTCCACGCCAAGCTTTCAGACT 1160 |||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 1113 GAGACTTCAAAGCTTCCAATATTCTTCTCGATTCCAACTTCCACGCCAAGCTTTCAGACT 1172 Query 1161 TTGGACTAGCCAAAAATGGCCCCATTAATGGATTCTCACACGTGACCACACGTGTCATGG 1220 | |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1173 TCGGACTAGCTAAAAATGGGCCCATTAATGGATTCTCACACGTGACCACACGTGTCATGG 1232 Query 1221 GCACACAAGGCTATGCAGCTCCCGAGTACATGGCTACAGGTCATCTATATGTGAGGAGTG 1280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1233 GCACACAAGGCTATGCAGCTCCCGAGTACATGGCTACAGGTCATCTATATGTGAGGAGTG 1292 Query 1281 ATGTTTACGGGTTTGGAGTGGTACTCTTAGAGCTCTTAACCGGTTTAAGAGCATTAGACC 1340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1293 ATGTTTACGGGTTTGGAGTGGTACTCTTAGAGCTCTTAACCGGTTTAAGAGCATTAGACC 1352 Query 1341 CAAACCGACCATCTGCGCAACAGAATCTTGTGGAATGGGCTAAACCGGTGCTGAACCAGA 1400 |||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||| Sbjct 1353 CAAACCGACCATCTGCGCAACAAAATCTTGTGGAATGGGCTAAACCGGGGTTGAACCAGA 1412 Query 1401 AGAAGAAGGTACAGAAAATGATGGACCCACGGCTCGAGCACAAATATCCACTTTTGGCAG 1460 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct 1413 AGAAGAAGGTTCAGAAAATGATGGATCCACGGCTCGAGCAGAAGTATCCACTTTTGGCGG 1472 Query 1461 TGGTCAAAACCGCCGAGCTTATTCTTCGGTGTCTCGAGGCTGACCCAAAAAACCGACCAC 1520 || ||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||| | Sbjct 1473 TGACCAAAACCGCGGAGCTCATTCTTCGGTGTCTGGAGGCTGACCCGAAAAACCGACCGC 1532 Query 1521 CAATGGATGATGTGCTTAGAGAATTAGAAGTTGTAAGGACTATCAGAGACCAACCCAAAG 1580 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 1533 CAATGGATGATGTGCTTAGAGAATTAGAAGTCGTAAGGACTATCAGAGACCAACCCCAAG 1592 Query 1581 AAGAGAGACGTAAAAGGAGCAGTGGTTCTGATCATGATAATAACCGGGTTCGTGGAAATG 1640 ||||||| |||||||||||||||||| | || |||| |||||||||||||||||||| Sbjct 1593 AAGAGAGGCGTAAAAGGAGCAGTGGT-C----CA-GATACTAACCGGGTTCGTGGAAATG 1646 Query 1641 ATTCACCGTATGGCCGTAGAACCGGTAGAACCGGATAGTCAAAGAGTTCTTTTGGATCAG 1700 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1647 ATTCACCATATGGCCGTAGAACCGGTCGAACCGGATAGTCAAAGAGTTCTTTTGGATCAG 1706 Query 1701 TCATATATGTAT-ACACACTATATACAGACGAACCACCTTTAA 1742 ||||| | ||| ||||| ||||||||||||||| |||||||| Sbjct 1707 TCATACGTATATTACACAGTATATACAGACGAACAACCTTTAA 1749 Score = 955 bits (517), Expect = 0.0 Identities = 739/837 (88%), Gaps = 52/837 (6%) Strand=Plus/Plus Query 1 AATCTTTCAATTaaaatccccaaaggagaaagatagaaaaagaaaaagggagagttggag 60 ||||||||||||||||||||| || || | ||||| | ||||||||| |||||||| Sbjct 70 AATCTTTCAATTAAAATCCCC-----AG-AA-A-AGAAAGA-AAAAAGGGACAGTTGGAG 120 Query 61 -aaaagTTTCTCTCTAAATCTTATGATCGTAAAGGGTGAAGCAAAGATTACTCAAAACAG 119 ||||| ||||||| |||||||||||||| ||||||||| ||||||||||| ||||||| Sbjct 121 AAAAAGATTCTCTC--AATCTTATGATCGTTAAGGGTGAAACAAAGATTACTAAAAACAG 178 Query 120 AGG-AAAACAGAG----G-------AA-AGTCAAGAGCTGGTTTTATCTTAATGGGGAAC 166 ||| ||||||||| | || |||||||||||||||| ||||||||||| ||| Sbjct 179 AGGAAAAACAGAGTAAAGATTACTCAAGAGTCAAGAGCTGGTTTGATCTTAATGGGAAAC 238 Query 167 TTCTGTCCTGGCTCTGGATCTTCCACTGTTCAACATGAACAGAGCCCTGCCTCCACCAAA 226 ||||||||||||||||||||||||||||| ||| || || |||| |||||||||| Sbjct 239 ATCTGTCCTGGCTCTGGATCTTCCACTGTT-AAC---CAC-GA-ACCTGTCTCCACCAAA 292 Query 227 CCCCTCCCAGTGAGACGTGTCCACAACCCAGAGAATAAAAAGTTTCCACCGGCGCTTGTA 286 |||||||||||||||||||| || | ||||||||||||||||||||| ||| |||| || Sbjct 293 CCCCTCCCAGTGAGACGTGTGCAGACCCCAGAGAATAAAAAGTTTCCTCCGCCGCTGGTG 352 Query 287 GCGATGCCGGCGTTAAATCCCAAGTTTCCGGC-GCCGGAAACAGGACATAAAAC-GAGAC 344 ||||||||||||||| |||||| |||||| | |||||||||||||||| |||| ||||| Sbjct 353 GCGATGCCGGCGTTACATCCCACGTTTCC-ACTGCCGGAAACAGGACAT-AAACTGAGAC 410 Query 345 CTGCCGCTACCCCACCTCGGGAAAAACCGCAAC--A-GAGGACGAGATCCGTCGCTACCC 401 | ||||||||||| ||||| ||||||||||||| | || |||||||||||||| | || Sbjct 411 CCGCCGCTACCCCGCCTCGTGAAAAACCGCAACATAGGACGACGAGATCCGTCGAGAACC 470 Query 402 CACCTCGTGAAAAACCGCAGGAGAAGACAAGATCCGTCGAAAACCCACCTCGGGAAAAAC 461 |||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| Sbjct 471 CACCTCGTGAAAAACCGCAGGAGAAGACAAGATCCGTCGAGAACCCGCCTCGTGAAAAAC 530 Query 462 CGCAGGAGAAGACGAGATCCGTCGAAAACCCACCTCGAGAAGAACCGCAGGAGAAGACGA 521 |||||||||| || |||||||| | ||| | || | ||| ||||||||||||| Sbjct 531 CGCAGGAGAAAACAAGATCCGTTG-AAA--C-CC-C-------ACCTCAGGAGAAGACGA 578 Query 522 GATCCGTCGATAATCCGCCATTAAAGCCGGTAGAAAAACTGGGTTTAGGAAGAAAAGCAG 581 || |||||||||||||||| | |||||||||||||||| ||||||||||||| ||||||| Sbjct 579 GACCCGTCGATAATCCGCCGTCAAAGCCGGTAGAAAAATTGGGTTTAGGAAGGAAAGCAG 638 Query 582 TGCCACCGAGCGGGAAGATAGTGACACCAAATCTAAAGATGTTTACATTAGTGGAGCTTA 641 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 639 TGCCACCGAGTGGGAAGATAGTGACACCTAATCTAAAGATGTTTACATTAGTGGAGCTTA 698 Query 642 AGACGGCTACAAAGAA-TTTCCGACCAGAGTCTGTGATCGGAGAAGGTGGATTCGGACAG 700 |||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||| Sbjct 699 AGACGGCTACAAAGAACTTT-CGACCAGAATCTGTGATCGGAGAAGGTGGATTCGGACAG 757 Query 701 GTTTTTAAAGGATGGGTGGATGAGAAAACATTAGCTCCGTCGAGAGCTGGCGTCGGAATA 760 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 758 GTTTTTAAAGGATGGGTGGATGAGAAAACATTAGCTCCGTCGAGAGCTGGCGTCGGAATA 817 Query 761 CCAGTCGCCGTTAAGAAATCAAATCCTGATAGTGAGCAAGGCTTACATGAATGGCAG 817 ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 818 CCAGTCGCCGTCAAGAAATCAAACCCTGATAGTGAGCAAGGCTTACATGAATGGCAG 874 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90411181545 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5