BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476796 Length=2036 Score E Sequences producing significant alignments: (Bits) Value AT1G76400.1 | Symbols: | Ribophorin I | chr1:28658554-28661710... 3229 0.0 AT1G76390.1 | Symbols: | ARM repeat superfamily protein | chr1... 226 7e-58 > AT1G76400.1 | Symbols: | Ribophorin I | chr1:28658554-28661710 REVERSE LENGTH=2042 Length=2042 Score = 3229 bits (1748), Expect = 0.0 Identities = 1944/2040 (95%), Gaps = 8/2040 (0%) Strand=Plus/Plus Query 1 AAGCGAGTTCGGAGACTGGTTGGAAAAATCTGACAAGGATGAAGCAATCGAGTGTCGTCG 60 |||| |||||| |||||||| ||||||||||||||||||||||||||| |||||||||| Sbjct 1 AAGCTAGTTCGAAGACTGGTCCGAAAAATCTGACAAGGATGAAGCAATCAAGTGTCGTCG 60 Query 61 ATCTGTTGCTTCTTCTGCTGGCGATCGCTCTTCTTGCGACGCCGGCGTTCTCCGATCTGG 120 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATCTGTTACTTCTTCTCCTGGCGATCGCTCTTCTTGCGACGCCGGCGTTCTCCGATCTGG 120 Query 121 TTTTATCCAAAGTCGAACGTCGTATCGATGTGACTTCACAGATTGCTCGCGTTACTAAGA 180 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 121 TTTTATCCAAAGTCGAACGTCGTATCGATGTGACTTCACAGATTGCTCGTGTTACTAAGA 180 Query 181 CTCTTAAGGTCGTCAATTCTGGCTCTGAATCAATTTCTGAGTTTATTTTGACCTTCCCAA 240 | |||||||| || |||||||||||||||||| ||||||||||| |||||| ||||||| Sbjct 181 CCCTTAAGGTTGTAAATTCTGGCTCTGAATCAGTTTCTGAGTTTGCTTTGACATTCCCAA 240 Query 241 AGTTTCTTGGGAACAACTTGGCTTATTTATCGGTTTC-CCATAGTGAGGGAAAGGGGAAA 299 |||||||||| ||||||||||||||| |||||||| | || ||||||||||||||||||| Sbjct 241 AGTTTCTTGGTAACAACTTGGCTTATCTATCGGTTGCTCC-TAGTGAGGGAAAGGGGAAA 299 Query 300 TCTAAACGTACGTTAGTCAATCTCTCTGTGAGAGAAGCTGATTC-GAAAGGAATACCCGA 358 |||||||| || ||||| |||||||||||||||||||||||| | |||||| |||| || Sbjct 300 TCTAAACGAACTTTAGTGAATCTCTCTGTGAGAGAAGCTGAT-CAGAAAGGTTTACCTGA 358 Query 359 TTCAATTAGTGTTTACTCTGTTACATTACCCAAATCACTCAGTAAAGGCGATACTTTGAC 418 |||||||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||| Sbjct 359 TTCAATTAGTGTTTACTCAGTTGCATTACCCAAACCACTGAGTAAAGGCGATACTTTGAC 418 Query 419 GTTGGAGGTGGTTGCTGCATTCACCAATGTACTTCAGCCATTTCCGGAGAAGATTACTCA 478 | ||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||| Sbjct 419 GCTGGAGGTAGTTGCTGCATTCACCAATGTACTTCAGCCATTTCCTGAAAAGATAACTCA 478 Query 479 GGGTGAAATCCATCTTGTTATGCTCCAAGAAAGTGCACAGTATCTCTCTCCTTACGCGGT 538 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 479 GGGTGAAATCCATCTTGTTATGCTCCAAGAAAGCGCACAATATCTCTCTCCTTACGCGGT 538 Query 539 TGAGTCTCAGTCTTTGTCTATCAAACTACCCAATGCCAGAATCGAATCTTACACCAAATT 598 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 539 TGAGTCTCAGTCATTGTCTATCAAACTACCGAATGCCAGAATCGAATCTTACACCAAATT 598 Query 599 GGAGAATACAAAGCTCCAGGGATCAGAGCTTAAATATGGCCCATACAAGAATCTCCAGTC 658 ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct 599 CGAGAATACAAAGCTCCAGGGATCAGAGCTCAAATATGGTCCTTACAAGAATCTCCAGTC 658 Query 659 GTATTCATACTCTCCCGTAGTTGTCCACTTTGAAAGCAAGGCTGCATTTGCTGTGGCTGA 718 ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 659 GTATTCATACTCTCCAATTGTTGTCCACTTTGAAAGCAAGGCTGCATTTGCTGTGGCTGA 718 Query 719 GAATCTTGTGCGAGAGATAGAAGTGTCTCATTGGGGGAATGTACAGGTCACGGAGCATTA 778 ||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 719 GAAGCTTGTGCGAGAGATAGAAGTGTCTCATTGGGGGAATGTGCAGGTCACGGAGAATTA 778 Query 779 CAATGTTGTCCACCGAGGGGCTCAACTCAGGGGAGAGTTTTCAAGGTTAGACTTTCAAGC 838 ||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |||||||| Sbjct 779 CAATGTTGTCCACCGTGGGGCTCAACTCAAGGGCGAGTTTTCAAGGTTAGATTTTCAAGC 838 Query 839 CAGACCTAATCCCCGAGGAGCATCTGCCTTTAGGCATTTACTTGCTAGATTGCCCCCCAG 898 ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 839 CAGACCTAATCCCCGTGGAGCATCTGCCTTTAGGCATTTACTTGCTAGATTACCCCCCAG 898 Query 899 AGCCCATTCCATATATTACAGGGATGATATTGGAAATATCTCCACGTCTGAGATGCAAAG 958 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 899 AGCCCATTCCATATATTACAGGGATGATATTGGAAATATCTCCACGTCTGAGATGAAAAG 958 Query 959 TGATTCGAAAAAGACAGAGCTACTAATTGAGCCTAGGTTTCCTTTGTTTGGTGGGTGGAA 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 TGATTCGAAAAAGACAGAGCTACTAATTGAGCCTAGGTTTCCTTTGTTTGGTGGGTGGAA 1018 Query 1019 AACTTTTTTCACGATAGGTTATGGTTTGCCACTTAGCGACTTCTTGTTTGCTTCGGAAGG 1078 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1019 AACTTTTTTCACGATAGGTTATGGTTTGCCACTTACCGACTTCTTGTTTGCTTCGGAAGG 1078 Query 1079 AAAGCGATTCCTTAATATCTCCTTTGGCTCCCCTATTCTTGACCTTGTCACTGAAAAACT 1138 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1079 AAAGCGATTCCTTAATATCTCCTTTGGCTCCCCTATACTTGACCTTGTCACTGAAAAACT 1138 Query 1139 TATTGTACAGGTAGTTTTACCCGAGGGGTCAAAGGATATATCAGTTGCCACTCCATTCAC 1198 |||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| | Sbjct 1139 TATTGTACAGGTGGTTTTACCTGAGGGGTCAAAGGATATATCAGTTACCACTCCATTCGC 1198 Query 1199 TGTCAAGCAGTCTCAAGAGATCAAATATTCACATTTAGATATAGCTGGTAGACCAGTTGT 1258 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 CGTCAAGCAGTCTCAAGAGATCAAATATTCACATTTAGATATAGCTGGTAGACCAGTTGT 1258 Query 1259 TGTGCTCGAAAAGAACAACGTTGTTCCAGATCACAATCAGCATGTCCAGGTCTACTATAA 1318 |||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||| Sbjct 1259 TGTGCTCGAAAAGAACAACGTTGTCCCTGATCACAATCAGCATATCCAGGTCTACTATAA 1318 Query 1319 GTTCAGCAACATCAATCTGCTGAGTGAGCCATTGATGTTAATCTCTGGATTTTTCTTTTT 1378 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1319 GTTCAGCAACATCAATCTGCTGAGTGAGCCATTGATGTTAATCTCTGGATTTTTCATTTT 1378 Query 1379 GTTCATCACTTGCATCATATACACACGGGCTGACTTCTCAATCTCCAAGTCCTCTCCGAC 1438 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1379 GTTCATCACTTGCATCATATACACACGGGCTGACATCTCAATCTCCAAGTCCTCTCCGAG 1438 Query 1439 ATACTTGGCAAAACTTCAATGGGATGAGGTCCTAGCAACACTCCAGGAAGTCCAAAGCAT 1498 || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 TTATTTGGCGAAACTTCAATGGGATGAGGTCCTAGCAACACTCCAGGAAGTCCAAAGCAT 1498 Query 1499 CATCCAAAAATGCTTAGCTACACATGATAAGCTTGAAGCATCGCTGCGTGATCTCTCAAG 1558 | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1499 CGTCCAAAAATGCTTAGCCACACATGATAAGCTTGAAGCATCGCTGCGTGATCTCTCAAG 1558 Query 1559 AACCGGTGACATTCAAACCTGCAAAGCAGCTCGCAAATCCACTGACAGTTTACTGAAAGA 1618 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 AACTGGTGACATTCAAACCTGCAAAGCAGCTCGCAAATCCACTGACAGTTTACTGAAAGA 1618 Query 1619 TTTTTCGAAAGAACTGAAACCATTGCTGGGTTTCTTACAGTCTTCCCCTAT-AGCCTCTC 1677 | ||||||||||||||||||| |||||||||||||||||||||| ||| || |||||||| Sbjct 1619 TCTTTCGAAAGAACTGAAACCGTTGCTGGGTTTCTTACAGTCTTTCCC-ATCAGCCTCTC 1677 Query 1678 ACATATCTCCAAAGGTCGAGGAGCTAGTTGCGAAAGAGAAAGAACTTGAAGAGAAGTTAA 1737 |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 1678 ACATATCTCCAAAGGTCGAGGAGCTAGTTGTGAAAGAGAAAGAACTTCAAGAGAAGTTAA 1737 Query 1738 TGGCCAAACATACCACTGTTGTTGAAGGGTATGAAAAGAAATCCTCAGGGCGTGATATCG 1797 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1738 TGGCCAAACATACCACTGTTGTTGAAGGGTACGAAAAGAAATCCTCAGGGCGTGATATCG 1797 Query 1798 AAAACCGGATTGCTTCTCAGCAGCAAAAGATCATAGCTTTGAGGCAAGAAATTGAAGATC 1857 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1798 AAAACCGGATCGCTTCTCAGCAGCAAAAGATCATAGCTTTGAGGCAAGAAATTGAAGATC 1857 Query 1858 TTCTAGAATTCATTGATGAGATCTAGAAAAGTTAAATGTAGCAGATCCTCTTAAGCTTAA 1917 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 1858 TTCTAGAATTCATTGATGAGATCTAGAAAAGTTAAATGTAGCAAATCCTCTTACGCTTAA 1917 Query 1918 ATACCAGACTTTTGAA-TGCACTACCTTTAGAAATTTTTTGTTCCTTAATGAGCAGTGTT 1976 |||||||||||||||| | |||| || ||||||| |||||||||| ||||||||||||| Sbjct 1918 ATACCAGACTTTTGAACT-CACTCCCATTAGAAAAATTTTGTTCCTCAATGAGCAGTGTT 1976 Query 1977 TATCAACTTTGAAAGACAGCTCTAGTTTCTCTGAGTTTAACAAATGAATCAAATTATCTT 2036 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1977 TATCAACTTTGAAAGACAGCTCTAGTTTCTCTGAGTTTAACAAATGAATCATATTATCTT 2036 > AT1G76390.1 | Symbols: | ARM repeat superfamily protein | chr1:28655399-28658711 FORWARD LENGTH=2856 Length=2856 Score = 226 bits (122), Expect = 7e-58 Identities = 143/153 (93%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 1885 AAAGTTAAATGTAGCAGATCCTCTTAAGCTTAAATACCAGACTTTTGAA-TGCACTACCT 1943 |||||||||||||||| ||||||||| |||||||||||||||||||||| | |||| || Sbjct 2856 AAAGTTAAATGTAGCAAATCCTCTTACGCTTAAATACCAGACTTTTGAACT-CACTCCCA 2798 Query 1944 TTAGAAATTTTTTGTTCCTTAATGAGCAGTGTTTATCAACTTTGAAAGACAGCTCTAGTT 2003 ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2797 TTAGAAAAATTTTGTTCCTCAATGAGCAGTGTTTATCAACTTTGAAAGACAGCTCTAGTT 2738 Query 2004 TCTCTGAGTTTAACAAATGAATCAAATTATCTT 2036 |||||||||||||||||||||||| |||||||| Sbjct 2737 TCTCTGAGTTTAACAAATGAATCATATTATCTT 2705 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 100903095450 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5