BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476815
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76570.1 | Symbols: | Chlorophyll A-B binding family protei... 1541 0.0
> AT1G76570.1 | Symbols: | Chlorophyll A-B binding family protein
| chr1:28729132-28730825 FORWARD LENGTH=1055
Length=1055
Score = 1541 bits (834), Expect = 0.0
Identities = 945/998 (95%), Gaps = 10/998 (1%)
Strand=Plus/Plus
Query 11 TGTTTCAGGAGAAGCTTTCATCATCACTTTCCTCAAGTTATTCGTCATTTCATTCTCTTC 70
||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 8 TGTTTCAGGAGAAGC-TT--TCATCACTTTCCTCAAGTTATTCGTCAATTCATTCTCTTC 64
Query 71 AGAGGATACACGTG-CCGGAGCCTCCTCGTTGTAGAATCGCTGTGACAAGGTCCCGTTCG 129
|||||| | |||| || || |||||| |||||| || ||||||| ||||||||||
Sbjct 65 CGAGGATTCTCGTGTCC-AAG---CCTCGTAATAGAATTGCCGTGACAAAGTCCCGTTCG 120
Query 130 ATCTGCAGAGCTTCGTGGCAAGAGCTCGCCGGAGTGTTGGTTTTCTCGGCGATTCCATTC 189
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTTGCAGAGCTTCGTGGCAAGAGCTCGCCGGAGTGTTGGTTTTCTCGGCGATTCCATTC 180
Query 190 ACGGCGGTTAAAGCAATAGCAAATAGCTCACTAGGCGAATCTTTACGGCGGAGATTGGAA 249
|| |||||||||||||| |||||||||||| |||| | ||| ||||||||||||| |||
Sbjct 181 ACTGCGGTTAAAGCAATTGCAAATAGCTCAATAGGAGTTTCTCTACGGCGGAGATTAGAA 240
Query 250 GAGAAAAAGAAGGAAGCCGTTGAGAATTCTTCAAGATTCAAGGCTAAAGCTCAGGAGGCT 309
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 241 GAGAAAAAGAAGGAAGCCGTAGAGAATTCTTCAAGATTCAAGTCTAAAGCTCAGGAAGCT 300
Query 310 AGAAACGACAGCAAGTGGTATGGAAAAGAACGTCCCCGTTGGTTTGGTCCAATCCCATAT 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGAAACGACAGCAAGTGGTATGGAAAAGAACGTCCCCGTTGGTTTGGTCCAATCCCATAT 360
Query 370 GATTATCCTCCATACCTTACAGGAGAACTTCCAGGGGATTATGGATTT-GACATTGCAGG 428
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 361 GATTATCCTCCATACCTTACAGGAGAACTTCCAGGGGATTATGG-TTTCGACATTGCAGG 419
Query 429 ACTTGGCAAGGATCGTTTGACCTTTGATAAGTACTTCAACTTTGAAATACTTCATGCTCG 488
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 ACTTGGCAAAGATCGTTTGACCTTTGATAAGTATTTCAACTTTGAAATACTTCATGCTCG 479
Query 489 TTGGGCCATGCTTGCAGCATTGGGTGCTCTAATCCCAGAAGTATTTGATCTCACCGGAGC 548
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct 480 TTGGGCCATGCTTGCAGCATTGGGTGCTCTAATCCCGGAAGTATTTGATCTCACTGGAAC 539
Query 549 TTTCCATTTTGCTGAACCCGTATGGTGGCGAGTCGGTTACTCGAAGCTTCAGGGAGAGAC 608
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 TTTCCATTTTGCTGAACCCGTATGGTGGCGAGTCGGTTACTCCAAGCTTCAGGGAGAGAC 599
Query 609 ATTGGACTACCTCGGCATTCCAGGGCTTCACGTAGCTGGAAGCCAAGGTGTCATCGTAAT 668
|||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 600 ATTGGAGTACCTCGGCATCCCAGGGCTTCATGTAGCTGGAAGCCAAGGTGTCATTGTAAT 659
Query 669 TGCCATTTGCCAAGTACTCTTGATGGTAGGACCGGAATATGCAAGATACTGTGGCATTGA 728
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 660 TGCCATTTGCCAAGTACTCTTGATGGTAGGACCGGAATACGCAAGATACTGTGGCATTGA 719
Query 729 GGCCTTAGAGCCACTGGGAATATACTTGCCAGGAGACATCAACTATCCTGGAGGGACGCT 788
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 GGCCTTAGAGCCACTGGGAATATACTTGCCAGGAGACATTAACTATCCTGGAGGGACGCT 779
Query 789 TTTTGATCCCTTGAACCTCTCTGAGGATCCGGTAGCTTTTGAAGATCTTAAGGTTAAAGA 848
||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||
Sbjct 780 TTTTGATCCCTTGAATCTTTCCGAGGATCCTGTAGCTTTTGAAGATCTTAAGGTTAAAGA 839
Query 849 GATTAAAAACGGACGATTGGCGATGGTCGCTTGGCTTGGATTTTATGCACAGGCTGCTGT 908
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 840 GATTAAAAATGGACGATTGGCGATGGTCGCGTGGCTTGGATTTTATGCACAGGCTGCTTT 899
Query 909 CACTGGAAAAGGTCCTGTACAAAATCTTGTTGACCATGTCTCTGATCCATTACATAACAA 968
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 900 CACTGGAAAAGGTCCTGTACAAAATCTTGTTGACCATGTCTCGGATCCATTACATAACAA 959
Query 969 TCTGCTTGCCATGCTTCAGACATGACAATGTGTGAATA 1006
|||| |||||||||||||||||||||||||||||||||
Sbjct 960 TCTGATTGCCATGCTTCAGACATGACAATGTGTGAATA 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50083444559
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5