BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476825
Length=1849
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76660.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2254 0.0
> AT1G76660.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: hydroxyproline-rich glycoprotein family protein
(TAIR:AT5G52430.1); Has 353 Blast hits to 231 proteins in 60
species: Archae - 0; Bacteria - 6; Metazoa - 57; Fungi - 22;
Plants - 125; Viruses - 4; Other Eukaryotes - 139 (source:
NCBI BLink). | chr1:28768879-28771409 REVERSE LENGTH=1947
Length=1947
Score = 2254 bits (1220), Expect = 0.0
Identities = 1476/1590 (93%), Gaps = 55/1590 (3%)
Strand=Plus/Plus
Query 283 AGCAGGAACAGAGGAAAAGGTGGGGAGGTTGTTTAGGAGTGTTCTCTTGTCTCAAGTCAC 342
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 384 AGCAGGATCAGAGGAAAAGGTGGGGAGGTTGTTTAGGAGTGTTCTCTTGTTTCAAGTCAC 443
Query 343 AAAAAGGTGGAAAAAGAATTGTACCAGCATCTCGCATTCCTGAAGGCGGCAATGTCTCGG 402
||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |
Sbjct 444 AAAAAGGTGGAAAAAGAATTGTACCTGCTTCTCGCATTCCTGAAGGTGGCAATGTCTCAG 503
Query 403 CCTCACAACCTAATGGAGCTCATCAAGCTGGTGTCTTAAATAATCAAGCTGCAGGAGGGA 462
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 CTTCACAACCTAATGGAGCTCATCAAGCTGGTGTCTTAAATAATCAAGCTGCAGGAGGGA 563
Query 463 TTAATCTATCTCT-TCTGGCTCCACCTTCCTCTCCTGCTTCCTTCACCAATTCGGCTCTT 521
|||||||||| || | ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 564 TTAATCTATCACTAT-TGGCTCCACCTTCCTCTCCTGCTTCCTTCACCAATTCAGCTCTT 622
Query 522 CCTTCAACCGCTCAGTCACCAAACTGCTACTTATCGCTGGCTGCGAATTCACCGGGAGGT 581
|||||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 623 CCTTCAACTACTCAGTCTCCAAACTGCTACTTATCTCTGGCTGCAAATTCACCGGGAGGT 682
Query 582 CCTTCGTCGAGTATGTATGCCACTGGACCATATGCTCATGAAACCCAATTGGTCTCACCG 641
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 683 CCTTCGTCGAGTATGTATGCCACTGGACCATATGCTCATGAAACCCAATTAGTCTCACCG 742
Query 642 CCTGTTTTCTCTACATTCACCACCGAGCCTTCGACTGCTCCTTTCACTCCTCCTCCAGAG 701
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 743 CCTGTTTTCTCTACTTTCACCACCGAGCCATCGACTGCTCCTTTCACTCCTCCTCCAGAG 802
Query 702 CTTGCACGCCTGACTGCTCCTTCTTCACCTGATGTACCTTATGCTCGTTTCTTGACTTCC 761
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 CTTGCACGTCTGACTGCCCCTTCTTCACCTGATGTACCTTATGCTCGTTTCTTGACTTCC 862
Query 762 TCCATGGATCTCAAGAACTCTGGTAAAGGTCATTACAATGTTTCAAGCGACCTTCAAGCT 821
|||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 863 TCCATGGATCTCAAGAACTCTGGTAAAGGTCATTACAA----T-----GATCTTCAAGCT 913
Query 822 ACATATTCTCTTTATCCCGGAAGTCCAGCCAGCGCTCTTAGATCACCAATCTCTCGGGCT 881
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 914 ACTTATTCTCTTTATCCCGGAAGTCCAGCCAGTGCTCTTAGATCACCAATCTCTCGGGCT 973
Query 882 TCGGGAGATGGGTTATTATCGCCTCAAAATGGTAAATGCTCAAGGAGTGATTCTGGCAAC 941
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 TCGGGAGATGGGTTATTGTCGCCTCAAAATGGTAAATGCTCAAGGAGTGATTCTGGCAAC 1033
Query 942 ACCTTTGGGTATGACACAAATGGAGTCTCGACACCTTTGCAGGAGTCAAACTTCTTCTGT 1001
|| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1034 ACATTCGGGTATGACACAAATGGAGTCTCAACACCTTTGCAGGAGTCAAACTTCTTCTGT 1093
Query 1002 CCTGAAACTTTTGCCAAGTTTTACCTGGATCACGATCCTTCGGTTCCTCAAAACGGTGGA 1061
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1094 CCTGAAACTTTTGCCAAGTTTTACCTGGATCACGACCCTTCAGTTCCTCAAAACGGTGGA 1153
Query 1062 AGATTAAGCGTGTCCAAGGATTCAGATGTGTATCCTACAAATGGATATGGAAACGGGAAC 1121
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 AGATTAAGCGTGTCGAAGGATTCAGATGTGTATCCTACAAATGGATATGGAAACGGGAAC 1213
Query 1122 CAGAATAGGCAAAACAGAAGTCCCAAGCAAGACATGGAGGAGTTAGAAGCTTACAGAGCT 1181
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1214 CAGAATAGGCAGAACAGAAGTCCCAAGCAAGACATGGAGGAGTTAGAAGCTTACAGGGCG 1273
Query 1182 TCCTTTGGGTTCAGTGCAGATGAAATCATCACAACTAGTCAGTATGTAGAGATCACTGAT 1241
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 TCCTTTGGTTTTAGTGCAGATGAAATCATCACAACTAGTCAGTATGTAGAGATCACTGAT 1333
Query 1242 GTGATGGATGATTCTTTTAACACAGCAGCTTACTCTCCAAGCGATGGACAAAAGCTTCTT 1301
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1334 GTGATGGATGGGTCTTTTAACACATCAGCTTACTCTCCAAGCGATGGACAAAAGCTTCTC 1393
Query 1302 AGAAGAGAAGCAAATCTGCTGAGTCAAACAAGCCCCAAATCAGAAGCAGATCTTGATTCA 1361
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1394 AGAAGAGAAGCAAATTTGCTGAGTCAAACAAGCCCCAAATCAGAAGCCGATCTTGATTCA 1453
Query 1362 CAAGTTGTAGACTTCCATTCACCAAAGGCATCAAATGGCTACAAAGATCACAAGCAAAGA 1421
||||||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||||
Sbjct 1454 CAAGTTGTAGACTTCCAATCACCAAAGTCATCAAATAGCTACAAAGATCACAAACAAAGA 1513
Query 1422 AACCGGATCCATGCGGATGAAGAGGCCTTACTGTCGAGAGTGGGGTCTGTAAAAGGAAGC 1481
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1514 AACCGGATCCATGCGGATGAAGAGGCTTTATTGTCGAGAGTGGGGTCTGTAAAAGGAAGC 1573
Query 1482 AGAAGCTATCCTATATCAAGCTCGGATGCAGAGGTCGAATACCGAAGAGGAAGAAGCTTA 1541
|||||||||| ||| |||||||| |||||||||||||| ||| |||||||||||||||||
Sbjct 1574 AGAAGCTATCATATTTCAAGCTCTGATGCAGAGGTCGAGTACAGAAGAGGAAGAAGCTTA 1633
Query 1542 AGGGAAAGCAGAGAGAACAGACACAGGATAGCCTGATCAAGAACAA---------GAA-A 1591
|||||||||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct 1634 AGGGAAAGCAGAGAGAACAGACACAGGAAAGCCTGATCAAGAACAACAACAACAAGAAGA 1693
Query 1592 -GCCAGC-T---CTGTTCTTAAGGTCTTCTAAGTTCTAAAAAGTATTAAATATGGATCTT 1646
| ||| | |||||||||| |||||||||| |||||||||| | | |||||
Sbjct 1694 AGAAAGCCTGATCTGTTCTTAAAGTCTTCTAAGGTCTAAAAAGT-T-------G-ATCTT 1744
Query 1647 GTGATGCTAACTCTCAAGATAATAA-TCTAGttttttttAAAGtatatatagatatatat 1705
|||||||||||||| |||||| || |||||||||| || ||||||||||||||||||
Sbjct 1745 GTGATGCTAACTCTTGAGATAAGAAGTCTAGTTTTT---AA-GTATATATAGATATATAT 1800
Query 1706 atatatataaatataAATTACAGATGGTTTTT-AGTAGAATG-T-T-ATATATAAGA-GA 1760
| | |||||| | || |||||||||||| ||||||||| | | |||||||||| ||
Sbjct 1801 A-A-ATATAA-T-TA-----CAGATGGTTTTTTAGTAGAATGATGTTATATATAAGAAGA 1851
Query 1761 GAGCAAGGGTGAGAAAGTGAATGCTTGTTTTT-AGTTTGACATGGCTTTTTTGTAAGACC 1819
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1852 GAGCAAGGGTGAGAAAGTGAATGCTTGTTTTTTAGTTTGACATGGCTTTTTTGTAAGACC 1911
Query 1820 CCATCTTTTATCTAATTGCACCAATCTGTT 1849
||||||||||||||||||||||||||||||
Sbjct 1912 CCATCTTTTATCTAATTGCACCAATCTGTT 1941
Score = 148 bits (80), Expect = 1e-34
Identities = 86/89 (97%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 1 ATTCTGATTAAAATAGAAATGCTTTTTCCATCGTAAGGATCATCTTTCCATGCCGATTGC 60
||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct 1 ATTCTGATTAAAATAGAAATGCTTTTTCCTTGGTAAGGATCATCTTTTCATGCCGATTGC 60
Query 61 ATCAGTGCAGATTTCCTTATTTACTCttt 89
|||||||||||||||||||||||||||||
Sbjct 61 ATCAGTGCAGATTTCCTTATTTACTCTTT 89
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91515593535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5