BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476826
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76670.1 | Symbols: | Nucleotide-sugar transporter family p... 2316 0.0
AT1G21070.1 | Symbols: | Nucleotide-sugar transporter family p... 1074 0.0
> AT1G76670.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr1:28772600-28774901 REVERSE LENGTH=1666
Length=1666
Score = 2316 bits (1254), Expect = 0.0
Identities = 1529/1654 (92%), Gaps = 50/1654 (3%)
Strand=Plus/Plus
Query 1 AAGAAAAGCATCAATGGT--G-GAAGAAGCTTGCTTGTGAGATTATATTCAGCGACGTCG 57
||| |||||||||||||| | |||||||||||||||||| | |||||||||| ||||||
Sbjct 24 AAGGAAAGCATCAATGGTGGGAGAAGAAGCTTGCTTGTGATAATATATTCAGCTACGTCG 83
Query 58 AGTGAAGAAGCAGTGAACCATAAGTAGAAGAGACAGAGAGAGAAGATACgt--gtgtgtg 115
||||||||| ||||||| ||||||||| |||||| |||||| |||||||| |||||||
Sbjct 84 AGTGAAGAACCAGTGAAGCATAAGTAGCAGAGAC--AGAGAG-AGATACGTGAGTGTGTG 140
Query 116 tgtgtg-tTTTCGCTTTTTGGCTTTCTTCGCCGATTCCACGAACGGCGTGAATCGACTTT 174
| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 141 TCTGTGTTTTTCGCTTTTTGGCTTTCTTCGCTGATTCCACGAACGGCGTGAATCGACTTT 200
Query 175 TCTGCAGATCTCA------TC----------TCT-TCAAAATCTGCAGGCGAATCGAGAT 217
||| ||||||||| || ||| |||||||||||| ||||||||||||
Sbjct 201 TCTCCAGATCTCATCTCTTTCAGTGTTTGATTCTGTCAAAATCTGCAAGCGAATCGAGAT 260
Query 218 TTGTCAGATCTCGTTTTCGCTTGCACGAGATTTCAGATCTGATAGTGTCGGTGTTCAATT 277
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 261 TTCTCAGATCTCGTTTTCGCTTGCACGAGA-TTCAGATCTGATAGTGTCGGTGTTCAATT 319
Query 278 TTCTTC-AATTCAAATGGAGAAACCGGAGAGCGAGAAGAAATCGGCTGTTTCCGACGTCG 336
||| || ||| ||||||||||||||||||||||||||||||||||| || || || ||||
Sbjct 320 TTC-TCAAATCCAAATGGAGAAACCGGAGAGCGAGAAGAAATCGGCGGTGTCTGATGTCG 378
Query 337 GTGCATGGGCTATGAATGTAATCAGCTCCGTTGGAATCATCATGGCTAATAAACAGCTCA 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 GTGCATGGGCTATGAATGTAATCAGCTCCGTTGGAATCATCATGGCTAATAAACAGCTCA 438
Query 397 TGTCTTCCTCTGGTTTCGGTTTTGGCTTTGCTACAACTCTTA-CGGGATTTCACTTCGCC 455
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||
Sbjct 439 TGTCTTCCTCTGGTTTCGGTTTTGGCTTTGCTACAACG-TTAACGGGATTTCACTTTGCA 497
Query 456 GTCACTGCACTTGTTGGTATGGTTTCAAACGCTTCGGGATTATCAGCTTCTAAGCATGTT 515
||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 498 TTCACTGCTCTTGTTGGTATGGTGTCAAACGCAACGGGACTATCAGCTTCTAAGCATGTT 557
Query 516 CCTCTTTGGGAGCTTCTCTGGTTCTCAATTGTTGCTAATATCTCCATTGCTGCTATGAAC 575
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 558 CCTCTTTGGGAGCTTCTCTGGTTCTCAATTGTTGCTAATATCTCTATCGCTGCTATGAAC 617
Query 576 TTCAGCCTTATGCTCAACTCTGTTGGCTTCTATCAGATTTCGAAATTGAGCATGATTCCG 635
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 TTTAGTCTTATGCTCAACTCTGTTGGCTTCTATCAGATTTCGAAATTGAGCATGATTCCG 677
Query 636 GTGGTATGCGTGTTGGAATGGATTATACATAGCAAGCATTACTGTAAAGAAGTGAAAGCT 695
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 678 GTGGTATGCGTGTTGGAATGGATTCTACATAGCAAGCATTATTGTAAAGAAGTGAAAGCT 737
Query 696 TCTGTAATGGTTGTGGTTATTGGTGTTGGGATTTGTACTGTGACTGATGTCAAAGTTAAT 755
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 738 TCTGTAATGGTTGTGGTTATCGGTGTTGGGATTTGTACTGTGACTGATGTCAAAGTTAAT 797
Query 756 GCTAAAGGTTTCATTTGTGCATGCACTGCCGTTTTCTCCACTTCTCTCCAGCAGATTTCT 815
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 798 GCCAAAGGTTTCATTTGTGCATGCACTGCCGTTTTCTCCACTTCTCTGCAGCAGATTTCT 857
Query 816 ATAGGCTCTCTGCAGAAGAAATACTCAGTAGGATCTTTTGAATTGCTGAGCAAAACAGCC 875
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 858 ATAGGCTCTCTGCAGAAGAAGTACTCAGTAGGATCCTTTGAATTGCTGAGCAAAACTGCA 917
Query 876 CCAATCCAAGCCATTTCACTTCTCATCTTTGGCCCCTTTGTTGACTATTTCTTGAGCGGC 935
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 918 CCAATCCAAGCCATTTCACTTCTCATCTGTGGCCCCTTTGTTGACTATTTGTTGAGCGGC 977
Query 936 AAATTCATATCTACTTACAAGATGACTTACGGTGCCATCTTCTGCATTCTTCTTTCCTGC 995
|||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||
Sbjct 978 AAATTCATATCTACTTACCAGATGACTTATGGTGCCATCTTCTGCATTCTTCTCTCCTGT 1037
Query 996 GCATTGGCTGTTTTCTGTAACATAAGTCAATATCTCTGCATTGGAAGATTCTCAGCGACA 1055
||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1038 GCATTAGCCGTTTTCTGTAACATAAGCCAATATCTCTGCATCGGAAGATTCTCAGCGACA 1097
Query 1056 TCTTTCCAAGTTCTAGGCCACATGAAAACAGTATGCGTCCTCACATTAGGTTGGCTTCTC 1115
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1098 TCTTTCCAAGTTCTAGGCCACATGAAAACAGTATGCGTCCTCACATTAGGATGGCTTCTC 1157
Query 1116 TTTGATTCCGAGATGACATTCAAGAACATCGCCGGGATGGCCATAGCCATTGTTGGAATG 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 TTTGATTCCGAGATGACATTCAAGAACATCGCCGGGATGGCCATAGCCATTGTTGGAATG 1217
Query 1176 GTGATCTATAGTTGGGCAGTTGATCTAGAGAAACAGAGGAATGCAAAGTTAACGCCACAC 1235
||||||||||||||||| |||||| |||||||||||||||| ||||||| ||||||||||
Sbjct 1218 GTGATCTATAGTTGGGCTGTTGATATAGAGAAACAGAGGAACGCAAAGTCAACGCCACAC 1277
Query 1236 GGCAAAAACAGTATGACCGAAGATGAGATTAAGCTACTCAAGGAAGGAGTTGAGCATATC 1295
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1278 GGCAAACACAGTATGACCGAAGATGAGATTAAGCTACTCAAAGAAGGAGTTGAGCATATC 1337
Query 1296 GACTTGAAAGACGTTGAGCTCGGTGACACTAAACCATAAG-GGTGTGCTTATA-CCCATT 1353
||||||||||||||||| |||||||||||||||||||||| || ||||||||| ||||||
Sbjct 1338 GACTTGAAAGACGTTGAACTCGGTGACACTAAACCATAAGTGG-GTGCTTATAACCCATT 1396
Query 1354 TGAAATTTACACGTCGAAAGTGATTTTAATTCTTTATACAAATATTTCCTTTGTGTGCCA 1413
||||||| || ||||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct 1397 TGAAATT-ACTCGTCGCTACTGATTCGAATTCTTTATACAAATATTTCCTTTGTGTGCCA 1455
Query 1414 TTTACTT-GTTCTTTCCACCACATTCTACATGTCTGAGACCATTTTGGGCTTCTCAGAAA 1472
||||||| ||||||||||| | | || |||||| ||| |||||||||||| |||||||
Sbjct 1456 TTTACTTTGTTCTTTCCACTTCCTA-TATATGTCTTAGAACATTTTGGGCTTTTCAGAAA 1514
Query 1473 GCCCATAAATCCTTCTTTGCTTAAGGAGAAGGCCCATCCTTGAATAGTGAA-TGTCCTAT 1531
|||||||||||||||||||||| || ||||||||| |||||||||||| || ||||||||
Sbjct 1515 GCCCATAAATCCTTCTTTGCTTGAGAAGAAGGCCCGTCCTTGAATAGT-AAGTGTCCTAT 1573
Query 1532 ATAGTAA-GTAATACAGAAATGTCAACTGAAGCATGTGATTTTATTCATTT--TC-TATA 1587
||||||| |||| |||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1574 ATAGTAAAGTAA-ACAGAAATGTCAACTGAAGCATGTGATTTTATTCATTTGATTATATA 1632
Query 1588 TG---A--A-CTACCAAAACAGATCTCTTGTATC 1615
|| | | ||||||||||||||||||||||||
Sbjct 1633 TGTCTATGAACTACCAAAACAGATCTCTTGTATC 1666
> AT1G21070.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr1:7375869-7378147 REVERSE LENGTH=1663
Length=1663
Score = 1074 bits (581), Expect = 0.0
Identities = 906/1063 (85%), Gaps = 21/1063 (2%)
Strand=Plus/Plus
Query 284 AATTCAAATGGAGAAACCGGAGAGCGAGAAGAA---ATCGGCTGTTTCCGACGTCGGTGC 340
||| |||||||||||| | |||| ||||||||| ||||||||| || |||||||| ||
Sbjct 331 AATCCAAATGGAGAAAGCAGAGAACGAGAAGAAGCCATCGGCTGTATCTGACGTCGGAGC 390
Query 341 ATGGGCTATGAATGTAATC-AGCTCCGTTGGAATCATCATGGCTAATAAACAGCTCATGT 399
|||||||||||| |||| | ||||||||||| |||||||||||||||||||| || ||||
Sbjct 391 ATGGGCTATGAACGTAA-CGAGCTCCGTTGGGATCATCATGGCTAATAAACAACTAATGT 449
Query 400 CTTCCTCTGGTTTCGGTTTTGGCTTTGCTACAACTCTTACGGGATTTCACTTCGC-CGTC 458
| || ||||| ||||| || |||| || |||||||| |||||||||||||| || | |
Sbjct 450 CATCATCTGGATTCGGCTTCAGCTTCGCGACAACTCTCACGGGATTTCACTTTGCTC-TT 508
Query 459 ACTGCACTTGTTGGTATGGTTTCAAACGCTTCGGGATTATCAGCTTCTAAGCATGTTCCT 518
||||| || ||||||||||| || || || | || |||||||| |||||||||||||||
Sbjct 509 ACTGCTCTCGTTGGTATGGTGTCGAATGCGACTGGTTTATCAGCATCTAAGCATGTTCCT 568
Query 519 CTTTGGGAGCTTCTCTGGTTCTCAATTGTTGCTAATATCTCCATTGCTGCTATGAACTTC 578
|||||||||||||| ||||||||| | |||||||||||||| || ||||||||||| ||
Sbjct 569 CTTTGGGAGCTTCTTTGGTTCTCACTCGTTGCTAATATCTCAATCGCTGCTATGAATTTT 628
Query 579 AGCCTTATGCTCAACTCTGTTGGCTTCTATCAGATTTCGAAATTGAGCATGATTCCGGTG 638
|| |||||| | ||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 629 AGTCTTATGTTGAACTCTGTTGGCTTCTACCAGATATCGAAATTGAGCATGATTCCAGTT 688
Query 639 GTATGCGTGTTGGAATGGATTATACATAGCAAGCATTACT-GTAAAGAAGTGAAAGCTTC 697
|| || ||| |||||||| || ||||||| |||||||||| | | ||||||||| || ||
Sbjct 689 GTTTGTGTGATGGAATGGGTTCTACATAGTAAGCATTACTCG-AGAGAAGTGAAGGCATC 747
Query 698 TGTAATGGTTGTGGTTATTGGTGTTGGGATTTGTACTGTGACTGATGTCAAAGTTAATGC 757
||| |||||||| ||| | || ||||||||||||||||| ||||||||||||||||||||
Sbjct 748 TGTCATGGTTGTTGTTGTAGGAGTTGGGATTTGTACTGTTACTGATGTCAAAGTTAATGC 807
Query 758 TAAAGGTTTCATTTGTGCATGCACTGCCGTTTTCTCCACTTCTCTCCAGCAGATTTCTAT 817
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 808 CAAAGGTTTCATTTGTGCTTGCACTGCCGTTTTCTCCACTTCTCTCCAGCAGATCTCAAT 867
Query 818 AGGCTCTCTGCAGAAGAAATACTC-AGTAGGATCTTTTGAATTGCTGAGCAAAACAGCCC 876
||| || ||||||||||||||||| | | ||||| || || |||||||| || ||||| |
Sbjct 868 AGGTTCACTGCAGAAGAAATACTCGA-TCGGATCATTCGAGTTGCTGAGTAAGACAGCTC 926
Query 877 CAATCCAAGCCATTTCACTTCTCATCTTTGGCCCCTTTGTTGACTATTTCTTGAGCGGCA 936
||||||||||||||||||| ||||||||||| || |||||||||||||||||||| ||||
Sbjct 927 CAATCCAAGCCATTTCACTCCTCATCTTTGGTCCATTTGTTGACTATTTCTTGAGTGGCA 986
Query 937 AATTCATATCTACTTACAAGATGACTTACGGTGCCATCTTCTGCATTCTTCTTTCCTGCG 996
|||||| || ||||||||||||||||| | || || || ||||||||||| |||||||
Sbjct 987 GATTCATTTCGACTTACAAGATGACTTATAGCGCAATGTTATGCATTCTTCTCTCCTGCG 1046
Query 997 CATTGGCTGTTTTCTGTAACATAAGTCAATATCTCTGCATTGGAAGATTCTCAGCGACAT 1056
||||||| |||||||| |||||||| |||||||||||||| ||||||||||| || || |
Sbjct 1047 CATTGGCGGTTTTCTGCAACATAAGCCAATATCTCTGCATCGGAAGATTCTCTGCTACCT 1106
Query 1057 CTTTCCAAGTTCTAGGCCACATGAAAACAGTATGCGTCCTCACATTAGGTTGGCTTCTCT 1116
| ||||||||||| ||||||||||||||||| || ||| | |||||||| |||||| |||
Sbjct 1107 CATTCCAAGTTCTTGGCCACATGAAAACAGTCTGTGTCTTAACATTAGGATGGCTTATCT 1166
Query 1117 TTGATTCCGAGATGACATTCAAGAACATCGCCGGGATGGCCATAGCCATTGTTGGAATGG 1176
||||||| |||||||||||||||||||| || ||||||| | ||||| | || |||||||
Sbjct 1167 TTGATTCGGAGATGACATTCAAGAACATAGCAGGGATGGTCTTAGCCGTGGTGGGAATGG 1226
Query 1177 TGATCTATAGTTGGGCAGTTGA-TCTAGAGAAACAGAGGAA-T-GCAAAGTTA-ACGCCA 1232
|||| || ||||||||||| || | ||||||||||||| || | | ||||| | || |
Sbjct 1227 TGATATACAGTTGGGCAGTCGAGT-TAGAGAAACAGAGAAAGTCG-AAAGTGATAC-CG- 1282
Query 1233 CACGGCAAAAACAGTATGACCGAAGATGAGATTAAGCTACTCAAGGAAGG-AGTTGAGCA 1291
|| || ||| |||||||||| |||||||||||||| || ||||| ||||| | | || ||
Sbjct 1283 CATGGTAAACACAGTATGACAGAAGATGAGATTAAACTTCTCAAAGAAGGTA-TAGAACA 1341
Query 1292 TATCGACTTGAAAGACGTTGAGCTCGGTGACACTAAACCATAA 1334
||| || ||||||||| | ||||| || | | |||| |||||
Sbjct 1342 TATGGATTTGAAAGACATGGAGCTTGGAAATAATAAAGCATAA 1384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79768666005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5