BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476828
Length=1189
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76690.1 | Symbols: OPR2, ATOPR2 | 12-oxophytodienoate reduc... 1664 0.0
AT1G76680.2 | Symbols: OPR1 | 12-oxophytodienoate reductase 1 |... 957 0.0
> AT1G76690.1 | Symbols: OPR2, ATOPR2 | 12-oxophytodienoate reductase
2 | chr1:28778890-28780483 FORWARD LENGTH=1339
Length=1339
Score = 1664 bits (901), Expect = 0.0
Identities = 1101/1197 (92%), Gaps = 15/1197 (1%)
Strand=Plus/Plus
Query 1 GAAATGGAAAACGCAGTAGCAAAACAGAGTATACCTCTTCTCACTCCC-TATAAGATGGG 59
||||||| |||||||| ||||||||||||| | ||||||||||| ||| |||||||||||
Sbjct 90 GAAATGGTAAACGCAGAAGCAAAACAGAGTGTCCCTCTTCTCAC-CCCTTATAAGATGGG 148
Query 60 AAGATTCAATCTTTCCCATAGGGTTGTTCTAGCACCATTGACGAGACAGAGATCGTACGG 119
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 149 AAGATTCAATCTTTCTCATAGGGTTGTTCTAGCACCATTGACGAGACAGAAATCGTACGG 208
Query 120 AAACGTTCCTCAGCCTCACGCTGCCGTATATTACTCTCAGAGAACGACTCAAGGAGGTTT 179
|| ||||||||||||||||||| | | |||||||||||||||||| | | ||||||||
Sbjct 209 AAGCGTTCCTCAGCCTCACGCTATCTTGTATTACTCTCAGAGAACGTCACCGGGAGGTTT 268
Query 180 TCTCATCACTGAAGCCACCGGAGTTTCAGATACAGCTCAAGGCTATGAAGATACTCCTGG 239
||||||| ||||||||||||| |||||||||||||||||||| ||| |||||| |||||
Sbjct 269 TCTCATCGCTGAAGCCACCGGGGTTTCAGATACAGCTCAAGGGTATCCAGATACACCTGG 328
Query 240 GATATGGACTAAAGAGCATGTGGAGGCATGGAAGCCAATCGTTGATGCTGTTCATGCCAA 299
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 329 GATATGGACTAAAGAGCATGTGGAGGCATGGAAGCCAATCGTTGATGCTGTACATGCCAA 388
Query 300 AGGTGGTATCTTCTTCTGTCAGATCTGGCATGTTGGCCGTGTTTCTAATCGCGGGTTTCA 359
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 389 AGGTGGTATCTTCTTCTGTCAGATCTGGCATGTTGGCCGCGTTTCTAATCGCGGTTTTCA 448
Query 360 GCCAA--ATGGACAAGCTCCTATCTCTTGTTCGGATAAGCCA-TTGATGCCTCAAATCCG 416
||||| | || |||||||||||||||||| ||| |||||| || ||||||||||| ||
Sbjct 449 GCCAAGGA-GG-CAAGCTCCTATCTCTTGTACGGGGAAGCCAATT-ATGCCTCAAATGCG 505
Query 417 CT-CTAATGGCATTGACGAAGC-CATGTTTACTCCTCCAAGACGGCTGAGTGTCGAAGAA 474
| ||||||||||||| ||||| | ||||| ||||||||||| || ||| ||||||||
Sbjct 506 -TGCTAATGGCATTGATGAAGCTCGC-TTTACCCCTCCAAGACGTCTAAGTATCGAAGAA 563
Query 475 ATCCCCGGCATTGTCAACGATTTTAGGCTTGCTGCAAGAAATGCTATGGAAGCTGGCTTT 534
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 564 ATCCCCGGCATTGTCAATGATTTTAGGCTTGCTGCAAGAAATGCTATGGAAGCTGGTTTT 623
Query 535 GACGGAGTTGAGATTCATGGAGCTCATGGCTATCTGATTGATCAGTTCATGAAGGATACA 594
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 624 GATGGAGTTGAGATTCATGGAGCTCATGGCTATCTGATTGATCAGTTCATGAAGGACAAA 683
Query 595 GTGAATGATAGAACTGATGAATACGGTGGATCATTGCAAAACCGTTGCAAATTTGCTTTA 654
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 684 GTGAATGACAGAACTGATGAATATGGTGGATCATTGCAAAACCGTTGCAAATTTGCTCTG 743
Query 655 GAAATAGTCGATGCAGTGGCCAAGGAGATCGGGCCAGACCGTGTTGGAATCAGGCTCTCT 714
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 744 GAAGTAGTCGATGCAGTGGCTAAGGAGATCGGGCCAGACCGTGTTGGAATCAGGCTCTCT 803
Query 715 CCGTTTGCAGACTACATGGAATCCGGAGACACTAATCCAGGAGCATTGGGGCTTTACATG 774
|||||||||||||| ||||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct 804 CCGTTTGCAGACTATATGGAATCCGGAGACACTAATCCAGAAGCATTAGGGCTGTACATG 863
Query 775 GCGGAATCTCTGAACAAATACGGAATCCTCTACTGTCATGTGATTGAAGCCAGAATGAAA 834
| |||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||
Sbjct 864 GTGGAATCTCTGAACAAATATGGAATCCTCTACTGTCATATGATTGAACCCAGAATGAAA 923
Query 835 ACAATGGGGGAAATATCAGCTTGTCCTCACACACTTATGCCGATGAGGAAAGCCTTTAAG 894
||| |||| |||||| |||| ||| |||||||||| ||||| |||||| |||||||||||
Sbjct 924 ACAGTGGGAGAAATAGCAGCGTGTTCTCACACACTAATGCCAATGAGGGAAGCCTTTAAG 983
Query 895 GGGACTTTCATCTCTGCAGGAGGTTTCACGAGAGAAGATGGGAATGAGGCCGTGGCAAAG 954
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 984 GGGACTTTCATCTCTGCAGGAGGTTTCACGAGGGAAGATGGGAATGAGGCCGTGGCAAAG 1043
Query 955 GGACGGACCGATCTGGTGGCTTACGGTCGATGGTTTCTGGCCAATCCGGACCTGCCAAAG 1014
||||| || ||||| |||||||| |||||||||||||| ||||| || ||||||||||||
Sbjct 1044 GGACGAACTGATCTTGTGGCTTATGGTCGATGGTTTCTAGCCAACCCAGACCTGCCAAAG 1103
Query 1015 AGGTTCCAAGTGGATGCACCGCTGAATAAATACGATAGACCAACGTTTTACACTTCTGAT 1074
|||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1104 CGGTTCCAACTGGATGCACCGCTGAATAAATACAATAGGTCAACGTTTTACACTTCTGAT 1163
Query 1075 CCTGTCGTGGGTTACACTGATTACCCTTTCCTCGAATCAACAGCTTAAAAT--TGTTATC 1132
||||||||||||||||| |||||||||| ||| |||||||||||||||||| |||||||
Sbjct 1164 CCTGTCGTGGGTTACACCGATTACCCTTCCCTTGAATCAACAGCTTAAAATCGTGTTATC 1223
Query 1133 AATAATGTAATGTGTTTCCCTTATGATGTAATAAGTTTCTGGCTTTTTATTTATACT 1189
| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1224 AGTAATGTAATGTGTTTCCCTAATGATGTAATAAGTTTCTGGCTTTTG-TTTATACT 1279
> AT1G76680.2 | Symbols: OPR1 | 12-oxophytodienoate reductase 1
| chr1:28776861-28778467 FORWARD LENGTH=1511
Length=1511
Score = 957 bits (518), Expect = 0.0
Identities = 620/668 (93%), Gaps = 11/668 (2%)
Strand=Plus/Plus
Query 532 TTTGACGGAGTTGAGATTCATGGAGCTCATGGCTATCTGATTGATCAGTTCATGAAGGAT 591
||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 725 TTTGATGGAGTTGAGATTCATGGAGCTAATGGCTATCTGATTGACCAGTTCATGAAGGAT 784
Query 592 ACAGTGAATGATAGAACTGATGAATACGGTGGATCATTGCAAAACCGTTGCAAATTTGCT 651
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 785 ACGGTGAATGATAGAACTGATGAATACGGTGGATCATTGCAAAACCGTTGCAAATTTCCT 844
Query 652 TTAGAAATAGTCGATGCAGTGGCCAAGGAGATCGGGCCAGACCGTGTTGGAATCAGGCTC 711
||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 845 CTAGAAATAGTCGATGCAGTTGCTAAGGAGATCGGACCAGACCGTGTTGGAATCAGGCTC 904
Query 712 TCTCCGTTTGCAGACTACATGGAATCCGGAGACACTAATCCAGGAGCATTGGGGCTTTAC 771
||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 905 TCTCCATTTGCTGACTACATGGAATCTGGAGACACTAATCCAGGAGCATTAGGGCTTTAT 964
Query 772 ATGGCGGAATCTCTGAACAAATACGGAATCCTCTACTGTCATGTGATTGAAGCCAGAATG 831
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 965 ATGGCGGAATCTTTGAACAAATACGGAATCCTCTACTGTCATGTGATTGAAGCGAGAATG 1024
Query 832 AAAACAATGGGGGAAATATCA-GCTTGTCCTCACACACTTATGCCGATGAGGAAAGCCTT 890
||||||||||| ||| || || ||||||||||||||||| ||||||||||||||||| ||
Sbjct 1025 AAAACAATGGGAGAAGTA-CATGCTTGTCCTCACACACTAATGCCGATGAGGAAAGCGTT 1083
Query 891 TAAGGGGACTTTCATCTCTGCAGGAGGTTTCACGAGAGAAGATGGGAATGAGGCCGTGGC 950
|||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||| |
Sbjct 1084 TAAGGGGACTTTTATCTCCGCAGGAGGTTTCACGAGGGAAGATGGGAATGAGGCTGTGTC 1143
Query 951 AAAGGGACGGACCGATCTGGTGGCTTACGGTCGATGGTTTCTGGCCAATCCGGACCTGCC 1010
||||||| | || ||| |||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 1144 AAAGGGAAGAACTGATTTGGTGGCTTATGGTCGATGGTTTCTAGCCAACCCGGACCTGCC 1203
Query 1011 AAAGAGGTTCCAAGTGGATGCACCGCTGAATAAATACGATAGACCAACGTTTTACACTTC 1070
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1204 AAAGAGGTTCCAAGTGGATGCACCGCTGAATAAGTACGATAGACCAACGTTTTACACTTC 1263
Query 1071 TGATCCTGTCGTGGGTTACACTGATTACCCTTTCCTCGAATCAACAGCTTAAAATTGTTA 1130
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1264 TGATCCAGTCGTCGGTTACACCGATTACCCTTTCCTCGAATCAACAGCTTAAAATTGTTA 1323
Query 1131 TCAATAATGTAATGT-GT-T-T--CCCTTAT----GATGTAATAAGTTTCTGGCTTTTTA 1181
||||||||||||||| || | | ||||||| ||||||||||||||||||||||| |
Sbjct 1324 TCAATAATGTAATGTAGTGTGTTTCCCTTATATAAGATGTAATAAGTTTCTGGCTTTTCA 1383
Query 1182 TTTATACT 1189
||||||||
Sbjct 1384 TTTATACT 1391
Score = 852 bits (461), Expect = 0.0
Identities = 509/532 (96%), Gaps = 4/532 (1%)
Strand=Plus/Plus
Query 1 GAAATGGAAAACGCAGTAGCAAAACAGAGTATACCTCTTCTCACTCCCTATAAGATGGGA 60
||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 119 GAAATGGAAAACGGAGAAGCAAAACAGAGTGTACCTCTTCTCACTCCCTATAAGATGGGA 178
Query 61 AGATTCAATCTTTCCCATAGGGTTGTTCTAGCACCATTGACGAGACAGAGATCGTACGGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGATTCAATCTTTCCCATAGGGTTGTTCTAGCACCATTGACGAGACAGAGATCGTACGGA 238
Query 121 AACGTTCCTCAGCCTCACGCTGCCGTATATTACTCTCAGAGAACGACTCAAGGAGGTTTT 180
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 239 AACGTTCCTCAGCCTCACGCTGCCATATATTACTCTCAGAGAACGACTCCAGGAGGTTTT 298
Query 181 CTCATCACTGAAGCCACCGGAGTTTCAGATACAGCTCAAGGCTATGAAGATACTCCTGGG 240
||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 299 CTCATCACTGAAGCCACTGGAGTTTCAGATACAGCTCAAGGATATCAAGATACTCCTGGG 358
Query 241 ATATGGACTAAAGAGCATGTGGAGGCATGGAAGCCAATCGTTGATGCTGTTCATGCCAAA 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 359 ATATGGACTAAAGAGCATGTGGAGGCATGGAAGCCAATCGTTGATGCTGTACATGCCAAA 418
Query 301 GGTGGTATCTTCTTCTGTCAGATCTGGCATGTTGGCCGTGTTTCTAATCGCGGGTTTCAG 360
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 419 GGTGGTATCTTCTTCTGTCAGATCTGGCATGTTGGCCGCGTTTCTAATAGCGGGTTTCAG 478
Query 361 CCAAATGGACAAGCTCCTATCTCTTGTTCGGATAAGCCATTGATGCCTCAAATCCGCTCT 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 479 CCAAATGGAAAAGCTCCTATCTCTTGTTCGGATAAGCCATTGATGCCTCAAATTCGCTCT 538
Query 421 AATGGCATTGACGAAGC-CATGTTTACTCCTCCAAGACGGCT-GAGTGTCGAAGAAATCC 478
|||||||| || ||||| | | ||||| |||||||||||||| | || ||||||||||||
Sbjct 539 AATGGCATCGATGAAGCTC-TCTTTACCCCTCCAAGACGGCTTG-GTATCGAAGAAATCC 596
Query 479 CCGGCATTGTCAACGATTTTAGGCTTGCTGCAAGAAATGCTATGGAAGCTGG 530
||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 597 CCGGCATTGTCAATGATTTTAGGCTTGCTGCAAGAAATGCTATGGAAGCTGG 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58383233835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5