BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476847 Length=1768 Score E Sequences producing significant alignments: (Bits) Value AT1G76900.1 | Symbols: AtTLP1, TLP1 | tubby like protein 1 | ch... 2368 0.0 > AT1G76900.1 | Symbols: AtTLP1, TLP1 | tubby like protein 1 | chr1:28882040-28884545 FORWARD LENGTH=1609 Length=1609 Score = 2368 bits (1282), Expect = 0.0 Identities = 1476/1570 (94%), Gaps = 12/1570 (1%) Strand=Plus/Plus Query 175 TGTAACCTTGAGAGAGAGAAAGA-AAATGTCGTTCCGCAGCATAGTTCGTGATGTGAGAG 233 ||||||||| ||||||||||| | ||||||||||||| |||||||||||||||||||||| Sbjct 48 TGTAACCTTTAGAGAGAGAAAAACAAATGTCGTTCCGTAGCATAGTTCGTGATGTGAGAG 107 Query 234 ACAGTATTGGAAGTCTGTCGAGGCGTAGTTTCGACTTTAAGCTAAGCAGCATGCACAAAG 293 | ||||| |||||||| |||||||||||||||||||||||| |||||||| || |||||| Sbjct 108 ATAGTATAGGAAGTCTATCGAGGCGTAGTTTCGACTTTAAGTTAAGCAGCTTGAACAAAG 167 Query 294 AAGGTGGGAAATCTCGTGGTTCGGTTCAAGATTCTCACGAGGAACAACTTGTAGTAACGA 353 ||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 168 AAGGTGGTAAATCCCGTGGTTCGGTTCAAGATTCTCATGAGGAACAACTTGTAGTAACGA 227 Query 354 TTCAAGAAACCCCGTGGGCGAATCTACCTCCAGAGTTATTGCGCGATGTGATCAAAAGAC 413 |||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 228 TTCAAGAAACACCGTGGGCGAATCTACCTCCAGAGTTATTACGTGATGTGATCAAAAGAC 287 Query 414 TTGAAGAGAGCGAAAGTGTGTGGCCTGCTCGTAGACATGTGGTTGCTTGTGCTTCTGTTT 473 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 288 TTGAAGAGAGTGAAAGTGTGTGGCCTGCTCGTAGACATGTTGTTGCTTGTGCTTCTGTTT 347 Query 474 GCAGGTCATGGAGAGATATGTGCAAAGAGATTGTTCAAAGTCCCGAGCTCTCGGGCAAAA 533 |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| Sbjct 348 GCAGGTCATGGAGAGATATGTGTAAAGAGATTGTTCAAAGTCCGGAGCTCTCAGGCAAAA 407 Query 534 TCACATTTCCTGTTTCGCTT-AAACAGCCGGGACCAAGAGATGCAACAATGCAATGCTTT 592 ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||| Sbjct 408 TCACATTTCCTGTTTCG-TTGAAACAGCCTGGACCAAGAGATGCAACAATGCAATGCTTT 466 Query 593 ATCAAGAGGGATAAATCTAACTTGACTTATCATTTATACCTTTGTCTCAGTCCTGCTTTG 652 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 467 ATCAAAAGGGATAAATCTAACTTGACTTATCATTTATATCTTTGTCTCAGTCCTGCTTTG 526 Query 653 TTGGTTGAGAATGGAAAGTTCCTTCTTTCCGCAAAACGCATAAGAAGAACTACCTACACC 712 |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| Sbjct 527 TTGGTTGAGAATGGAAAGTTTCTTCTTTCTGCAAAACGCATAAGAAGAACTACATACACC 586 Query 713 GAGTACGTGATCTCTATGCACGCCGACACCATTTCGAGATCAAGCAGTACTTACATTGGC 772 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 587 GAGTACGTGATCTCTATGCACGCCGACACCATTTCGAGATCAAGCAATACCTACATTGGC 646 Query 773 AAAATCAGGTCTAATTTTCTGGGGACGAAGTTCGTAATATACGATACACAACCTGCATAC 832 |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 647 AAAATCAGGTCTAATTTTCTGGGGACGAAGTTTATAATATACGATACACAACCAGCATAC 706 Query 833 AACAGCAACACCGCTCGAGTGGTCCAACCGGTAGGCCTTAGCCGCAGATTTTACTCAAAG 892 |||||||||| |||||||| ||||||||||||||| |||||||||||||| ||||||||| Sbjct 707 AACAGCAACATCGCTCGAGCGGTCCAACCGGTAGGTCTTAGCCGCAGATTCTACTCAAAG 766 Query 893 AGAGTATCTCCCAAAGTACCGAGTGGGAGCTACAAAATTGCGCAGGTTTCTTATGAGCTA 952 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 767 AGAGTCTCTCCCAAAGTACCTAGTGGGAGCTACAAAATTGCGCAGGTTTCTTATGAGCTA 826 Query 953 AACGTTCTTGGTACTCGCGGTCCAAGGAGAATGCATTGTGCGATGAACTCAATTCCCGCC 1012 |||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| Sbjct 827 AACGTTCTTGGTACCCGTGGTCCGAGGAGAATGCATTGTGCGATGAACTCAATTCCCGCC 886 Query 1013 TCTTCCCTCGCTGAAGGCGGAACCGTGCCTGGACAGCCTGATATCATTGTCCCGCGCTCT 1072 |||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 887 TCTTCCCTTGCGGAAGGCGGAACTGTGCCTGGACAGCCCGATATCATTGTCCCGCGCTCT 946 Query 1073 ATTCTCGACGAATCGTTCCGCAGCATTACCTCCTCTTCGTCGAGAAAAATCACTTACGAT 1132 |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| Sbjct 947 ATTCTCGACGAATCGTTCCGCAGCATTACCTCTTCGTCATCGAGAAAAATCACTTACGAT 1006 Query 1133 TACTCGAACGATTTTAGTAGCGCACGGTTTTCCGACATTCTCGGCCCGTTAGGCGAGGAC 1192 |||||||| |||||||| || |||||||||||||||||||| ||||||||| |||| ||| Sbjct 1007 TACTCGAATGATTTTAGCAGTGCACGGTTTTCCGACATTCTTGGCCCGTTAAGCGAAGAC 1066 Query 1193 GAAGAAGCGGCATTAGAAGAAGGGAAAGAGCGGAATTTGCCACCACTTGTGCTTAAGAAC 1252 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1067 CAAGAAGTGGTATTAGAAGAAGGGAAAGAGCGGAATTCGCCACCACTTGTGCTTAAGAAC 1126 Query 1253 AAGCCGCCGAGGTGGCATGAACAGCTTCAATGCTGGTGTTTAAACTTCAGGGGACGCGTA 1312 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| Sbjct 1127 AAGCCGCCGAGGTGGCATGAACAGCTTCAGTGTTGGTGTTTAAACTTCAGGGGACGTGTA 1186 Query 1313 ACTGTCGCATCAGTTAAGAACTTTCAGCTGATTGCTGCAAACCAACCTCAGCCCCAGCCT 1372 || |||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||| Sbjct 1187 ACAGTCGCATCAGTTAAGAACTTTCAGCTCATTGCAGCAAACCAACCACAGCCTCAGCCT 1246 Query 1373 CAACCGCAACCGCAACCTCAAATTCAGCCTCTAACTCAGCCGCAACCGTCGGGTCAGACC 1432 || || ||||||||||||| || | || |||||||||||||||||||| ||||||||| Sbjct 1247 CAGCCTCAACCGCAACCTC-AA--C--CC-CTAACTCAGCCGCAACCGTCTGGTCAGACC 1300 Query 1433 GATGGTCCCGACAAGATCATATTGCAGTTTGGGAAAGTGGGAAAAGACATGTTCACGATG 1492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1301 GATGGTCCCGACAAGATCATATTGCAGTTTGGGAAAGTGGGAAAAGACATGTTCACGATG 1360 Query 1493 GATTTCCGGTATCCACTCTCAGCGTTTCAAGCTTTCGCTATCTGTTTGAGCAGTTTCGAT 1552 |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 1361 GATTTCCGGTATCCGCTCTCTGCGTTTCAGGCTTTCGCTATCTGTTTGAGCAGTTTCGAC 1420 Query 1553 ACGAAACTCGCGTGCGAATAAGTAAAAAAGTCAGCTTTGTATGTAATGTTTTCAGATTTG 1612 || ||||| || ||||||||||| ||||| |||||||||||||||||||| ||||||||| Sbjct 1421 ACAAAACTTGCTTGCGAATAAGTCAAAAACTCAGCTTTGTATGTAATGTTATCAGATTTG 1480 Query 1613 CTTTGGAGATTCTTGTTTCGTGGTGTTTTATTTTTCACCGAGAATCTCAGAATTAGATTT 1672 |||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| Sbjct 1481 CTTTGGAGATTCTTGTTTTGTGGTGTTTTATTTT-CACCGAGAATCTCATAATTAGATTT 1539 Query 1673 GTTTTCAAGCTTTCATTGCTTATGTTGTTTATTGGTGCAACCAAAAAGTTAATTCTGAGT 1732 |||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| |||| Sbjct 1540 GTTT-CAAGCTTTCATTGCTTATGCTGTTTATTGGTGCAACCAAAAAGTTTATTC-GAGT 1597 Query 1733 TTGGTTTTTC 1742 |||||||||| Sbjct 1598 TTGGTTTTTC 1607 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87449349390 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5