BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476859 Length=1862 Score E Sequences producing significant alignments: (Bits) Value AT1G76990.1 | Symbols: ACR3 | ACT domain repeat 3 | chr1:289321... 2451 0.0 > AT1G76990.1 | Symbols: ACR3 | ACT domain repeat 3 | chr1:28932162-28935539 FORWARD LENGTH=1991 Length=1991 Score = 2451 bits (1327), Expect = 0.0 Identities = 1477/1548 (95%), Gaps = 15/1548 (1%) Strand=Plus/Plus Query 61 cttcttcttcttctgtgtctctctggtctgtctctgtgtaatc-tctgt--t-tctttaa 116 |||||||||||||| ||||||| | ||||||||| ||||||| ||||| | || || Sbjct 99 CTTCTTCTTCTTCTCTGTCTCTGT-CTCTGTCTCTCTGTAATCTTCTGTGCTCTCCACAA 157 Query 117 attcgtctctcctcttctctctTGCTGACTCCACAAAATTTGAGCtt-tttttttGAAGT 175 ||| |||||||||| |||||| || ||||||||||| ||||||||| |||||||||||| Sbjct 158 ATTTGTCTCTCCTC-TCTCTC--GCCGACTCCACAAATTTTGAGCTTCTTTTTTTGAAGT 214 Query 176 TCTTGAGAACAAGTG-AAGAGCTTAATATCCACAAGACTCTCTTGTTTCTTTGTTAAATG 234 ||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 215 TCTTGAGAACAAGTGAAAGAGCTTAATATCCACAAGA--CTCTTGTTTCTTTCTTAAATG 272 Query 235 GCTAAAGTTTATTGGCCGTATTTCGATCCTGAATATGAGAACTTGAGCACCAGAATCAAT 294 ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 273 GCTAAAGTTTATTGGCCTTATTTCGATCCTGAATATGAGAACTTGAGCTCCAGAATCAAT 332 Query 295 CCTCCAAGTGTTTCTATAGATAACACTAGCTGCAAAGAATGCACTCTTGTCAAGGTGGAC 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 333 CCTCCAAGTGTTTCTATAGATAACACTAGCTGCAAAGAATGCACTCTTGTCAAGGTGGAC 392 Query 355 AGTATGAACAAACCTGGAATACTGCTGGAAGTTGTGCAAGTCCTTACCGATCTCGATCTC 414 ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| Sbjct 393 AGTATGAACAAACCTGGAATACTACTTGAAGTTGTGCAAGTCCTAACCGATCTCGATCTC 452 Query 415 ACAATCACCAAAGCATATATCTCTTCTGATGGTGGATGGTTCATGGACGTATTCCATGTC 474 || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 453 ACTATCACTAAAGCTTATATCTCTTCTGATGGTGGATGGTTCATGGACGTATTCCATGTC 512 Query 475 ACTGATCAACAAGGAAACAAGGTTACTGATAGCAAAACCATTGATTACATCGAGAAGGTT 534 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 513 ACCGATCAACAAGGAAACAAGGTTACTGATAGCAAAACCATCGATTACATCGAGAAGGTG 572 Query 535 TTAGGACCAAAGGGTCATGCTTCGGCTTCACAAAACGCTTGGCCTGGTAAAAGGGTCGGT 594 |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct 573 TTAGGACCAAAGGGTCATGCTTCGGCTTCACAAAACACTTGGCCTGGTAAAAGAGTCGGT 632 Query 595 GTCCATTCATTAGGCGACCACACATCGATAGAGATTATTGCTCGTGATCGTCCTGGTCTC 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 633 GTCCATTCATTAGGCGACCACACATCGATAGAGATTATTGCTCGTGATCGTCCTGGTCTC 692 Query 655 TTGTCTGAGGTCTCAGCCGTACTAGCAGACCTCAACATCAATGTGGTGGCTGCTGAAGCA 714 ||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 693 TTGTCGGAGGTTTCAGCCGTACTAGCAGACCTCAACATTAATGTGGTGGCAGCTGAAGCA 752 Query 715 TGGACTCACAACCGTAGGATCGCGTGTGTCCTCTATGTGAATGACAATGCAACTTCTAGA 774 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 753 TGGACTCACAACCGTAGGATTGCGTGTGTCCTCTATGTGAATGACAATGCAACTTCTAGA 812 Query 775 GCCGTTGATGACCCAGAAAGATTGTCTGCCATGGAAGAACAGCTCAACAACGTGCTGCGT 834 ||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||||| Sbjct 813 GCCGTTGATGATCCAGAAAGATTGTCTTCCATGGAAGAACAGCTTAACAATGTGCTGCGT 872 Query 835 GGGTGTGAACAAGAAGATGAGAAATTTGCTCGGACGAGTCTCTCCATTGGGTCAACTCAC 894 ||||| ||| || |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 873 GGGTGCGAAGAACAAGATGAGAAATTTGCTCGGACGAGTCTCTCCATTGGGTCGACTCAC 932 Query 895 GTTGATCGAAGGCTTCATCAGATGTTTTTCGCTGATAAAGACTATGAAGCAGTGACCAAG 954 ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||| Sbjct 933 GTTGATCGAAGGCTTCATCAGATGTTTTTCGCTGATAGAGACTACGAAGCAGTGACTAAG 992 Query 955 CTTGATGATTTTGCTTCTCGTGGACTCGAGCCCAAAATCACGGTTGAGCATTGCGAAGAG 1014 |||||||||| ||||||| | ||| |||||||||||||||||||||||||||| |||||| Sbjct 993 CTTGATGATTCTGCTTCTTGCGGATTCGAGCCCAAAATCACGGTTGAGCATTGTGAAGAG 1052 Query 1015 AAAGGTTACTCTGTGATAAACGTGAACTGCGAGGATCGACCAAAGCTCATGTTTGACATT 1074 ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1053 AAAGGTTACTCCGTGATAAACGTGAGCTGCGAGGATCGACCAAAGCTCATGTTTGACATT 1112 Query 1075 GTATGCACGCTTACGGATATGCAATACATTGTGTTTCACGCCACGATTTCATCAAGCGGC 1134 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1113 GTATGCACGCTTACGGATATGCAATACATTGTGTTTCACGCCACGATTTCATCAAGCGGC 1172 Query 1135 TCTCATGCTTCTCAGGAGTATTTCATTAGACACAAAGACGGTTGCACTCTTGACAC---A 1191 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 1173 TCTCATGCTTCTCAGGAGTATTTCATCAGACACAAAGACGGTTGCACTCTTGACACAGAA 1232 Query 1192 GGAGAGAAAGAGAGAGTTATCAAATGTCTAGAAGCCGCAATCCATAGACGAGTCAGCGAG 1251 |||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| Sbjct 1233 GGAGAGAAAGAGAGAGTTGTCAAATGTCTGGAAGCTGCAATCCATAGACGAGTCAGCGAG 1292 Query 1252 GGTTGGAGTTTAGAGCTCTGCGCAAAGGACAGAGTTGGATTACTGTCGGAAGTGACAAGG 1311 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1293 GGTTGGAGTTTGGAGCTCTGCGCAAAGGACAGAGTTGGATTACTGTCGGAAGTGACAAGG 1352 Query 1312 ATTCTGAGAGAGCACGGGCTATCAGTGTCGAGAGCTGGTGTGACAACAGTAGGAGAACAA 1371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1353 ATTCTGAGAGAGCACGGGCTATCAGTGTCGAGAGCTGGTGTGACAACAGTAGGAGAACAA 1412 Query 1372 GCCGTCAACGTTTTCTATGTGAAAGATGCTTCAGGGAATCCAGTGGACGTGAAGACGATT 1431 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1413 GCCGTCAACGTTTTCTATGTGAAAGATGCTTCAGGGAATCCAGTGGATGTGAAGACGATT 1472 Query 1432 GAGGCGTTACGCGGAGAGATCGGACACAGTATGATGATTGACTTCAAGAATAAAGTTCCG 1491 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1473 GAGGCGTTACGCGGAGAGATTGGACACAGTATGATGATTGACTTCAAGAATAAAGTTCCG 1532 Query 1492 AGCAGAAAATGGAAAGAAGAAGGTCAAGCCGGAACAGGAGGAGGATGGGCCAAAACCACT 1551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1533 AGCAGAAAATGGAAAGAAGAAGGTCAAGCCGGAACAGGAGGAGGATGGGCCAAAACCAGT 1592 Query 1552 TTCTTCTTTGGGAATTTGCTGGAGAAGTTGCTGCCTTGAGAGAAAAGG 1599 ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1593 TTCTTCTTTGGGAATTTGCTGGAGAAGTTACTGCCTTGAGAGAAAAGG 1640 Score = 353 bits (191), Expect = 3e-96 Identities = 247/271 (91%), Gaps = 15/271 (6%) Strand=Plus/Plus Query 1597 AGGGATTTTGGTGGTTTGCCCGAAACT-AAACCGAACCAAAACTGGTTTTCGG-----TT 1650 |||||||||||||||||||||| || | ||||||||||||||||||||||||| || Sbjct 1722 AGGGATTTTGGTGGTTTGCCCG-AAGTCAAACCGAACCAAAACTGGTTTTCGGTTACTTT 1780 Query 1651 --AC-TTAGTCATAGTAAAATGAACATGTCTATAAAAGAATAATATGCAACTCTTCCTAT 1707 || ||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 1781 AGACTTTAGTCATAGTAAAATGAACATGTCTATAAATGAATAATATGCAACTCTTCCAAT 1840 Query 1708 TGGAAGGCTTGCTTTTGTCTATGTAATATCGAT-C--CTTGTTATGTA-TTATCTTTGGC 1763 ||| |||||||||||||||||||||||||| || | ||||||||||| ||||||||||| Sbjct 1841 TGGTAGGCTTGCTTTTGTCTATGTAATATCAATCCTTCTTGTTATGTATTTATCTTTGGC 1900 Query 1764 CAAATGTGATATTTTCTGTAGTTT-AATCTCTTCTTTCCCTTCTATTTTGTAACTTCTTT 1822 |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 1901 CAAATGTGATATTTTCTGTAGTTTTAATCTCTTCTTTTCCTTCTATTTTGTAACTTCTTC 1960 Query 1823 GAATCTTGAATATCAATATCATTGCAGTGAG 1853 ||||||| ||| ||||||||||||||||||| Sbjct 1961 GAATCTTTAATGTCAATATCATTGCAGTGAG 1991 Score = 111 bits (60), Expect = 2e-23 Identities = 60/60 (100%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 1 ACAGAAAGAAGGGTTTCAATCTCATTAAAGAGAAAAGAAACGATTAGAGAAAGAGAAGAG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACAGAAAGAAGGGTTTCAATCTCATTAAAGAGAAAAGAAACGATTAGAGAAAGAGAAGAG 60 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92168200620 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5