BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476870
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77080.4 | Symbols: MAF1, FLM, AGL27 | K-box region and MADS... 1127 0.0
AT5G65060.1 | Symbols: MAF3, FCL3, AGL70 | K-box region and MAD... 743 0.0
AT5G65050.3 | Symbols: AGL31, MAF2 | AGAMOUS-like 31 | chr5:259... 710 0.0
> AT1G77080.4 | Symbols: MAF1, FLM, AGL27 | K-box region and MADS-box
transcription factor family protein | chr1:28955637-28960096
FORWARD LENGTH=884
Length=884
Score = 1127 bits (610), Expect = 0.0
Identities = 787/868 (91%), Gaps = 29/868 (3%)
Strand=Plus/Plus
Query 1 AGGATTAAATTAGGGCATAACCCTTATCGGAGA-TTGAAGCCATGGGAAGAAGAAAAATC 59
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AGGATTAAATTAGGGCATAACCCTTATCGGAGATTTGAAGCCATGGGAAGAAGAAAAATC 60
Query 60 GAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAAT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAAT 120
Query 120 GGTCTCATAGACAAAGCTCGACAACTTTCGATTCTCTGTGAATCCTCCGTCGCTGTTGTC 179
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTCTCATCGACAAAGCTCGACAACTTTCGATTCTCTGTGAATCCTCCGTCGCTGTTGTC 180
Query 180 GTCGTCTCTGCCTCCGGAAAACTCTACGAGTCTTCCTCCGGTGACGAGA--TAGAAG--C 235
||||| |||||||||||||||||||| || ||||||||||||||||| | | ||| |
Sbjct 181 GTCGTATCTGCCTCCGGAAAACTCTATGACTCTTCCTCCGGTGACGACATTTCCAAGATC 240
Query 236 GCTGGTCAAG-CCGGAGAT--AAC-T-C-AATG--TTTTGA-ACTT-GATCTTGCAGAAA 285
|| || | || || ||| | | ||| || || ||| ||||||| |||||
Sbjct 241 ATTGATC--GTTATGAAATACAACATGCTGATGAACTTAGAGCCTTAGATCTTGAAGAAA 298
Query 286 AAATTCAGAATTATCTTCCACACAAGGAGTTACTAGAGACAGTCCAAAGCAAGCTTGAAG 345
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 299 AAATTCAGAATTATCTTCCACACAAGGAGTTACTAGAAACAGTCCAAAGCAAGCTTGAAG 358
Query 346 AACCAAATGTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTCGAGA 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 359 AACCAAATGTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTTGAGA 418
Query 406 CTGCTCTGTCCGTAAGTAGGGCTAGGAAGGCAGAACTGATGATGGAGTATGT-GAAGTCC 464
||||||||||||||||||| |||||||||||||||||||||||||||||| | || ||||
Sbjct 419 CTGCTCTGTCCGTAAGTAGAGCTAGGAAGGCAGAACTGATGATGGAGTATATCGA-GTCC 477
Query 465 -TTAAAAGAAAAGGAGATGTTGCTGAGGGAAGAGAACCAGGTTCTGGCTAGCCAGATGGG 523
||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 478 CTTAAA-GAAAAGGAGAAATTGCTGAGAGAAGAGAACCAGGTTCTGGCTAGCCAGATGGG 536
Query 524 GAAGAATACGTTGCTGGCAATAGAGGATGAGAGAGGAATGTTGCCGGAAAGTAGCTCCGG 583
||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||||||
Sbjct 537 AAAGAATACGTTGCTGGCAACAGATGATGAGAGAGGAATGTTTCCGGGAAGTAGCTCCGG 596
Query 584 CAACAAAATACCGGAGACTCTCCCGCTGCTCAAGTAACCACCATCATCAACGGCTTGAGT 643
||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 597 CAACAAAATACCGGAGACTCTCCCGCTGCTCAATTAGCCACCATCATCAACGGCT-GAGT 655
Query 644 TTTCCAGCTTAAACTCAACGCCTGATTCAGAATGAAGAAAACATATTTGTAAATTTATAA 703
|||| | ||||||||||| |||||||||| ||| |||| || | ||||||| ||| ||||
Sbjct 656 TTTC-ACCTTAAACTCAAAGCCTGATTCATAATTAAGAGAATAAATTTGTATATT-ATAA 713
Query 704 AAAGCTGTATAATCTCAAACCTTTTATCTTCCTCTAGTGTGGAATTAAAGGTTAAAAA-A 762
|||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 714 AAAGCTGTGTAATCTCAAACCTTTTATCTTCCTCTAGTGTGGAATTTAAGGTCAAAAAGA 773
Query 763 CT-CGATAAAGTATGGATC-GTTGTTGTACCTTCCTTCAAAGACAAGATCAGAGTTCATG 820
||| |||||||||||| || ||||||||| ||||| |||||||||||||||| ||
Sbjct 774 AAACGAGAAAGTATGGATCAGT-GTTGTACCT-CCTTCGGAGACAAGATCAGAGTTTGTG 831
Query 821 TGTTTGTGTTTGAATGTACGGATTGGAT 848
||||||||| ||||||||||||||||||
Sbjct 832 TGTTTGTGTCTGAATGTACGGATTGGAT 859
> AT5G65060.1 | Symbols: MAF3, FCL3, AGL70 | K-box region and MADS-box
transcription factor family protein | chr5:25987429-25991315
FORWARD LENGTH=939
Length=939
Score = 743 bits (402), Expect = 0.0
Identities = 667/789 (85%), Gaps = 41/789 (5%)
Strand=Plus/Plus
Query 1 AGGATTAAATTAGGGCATAACCCTTATCGGAGATTGAAGCCATGGGAAGAAGAAAAATCG 60
||||| ||||||||||| || |||||||||||| ||||||||||||||||||||| |||
Sbjct 58 AGGATCAAATTAGGGCACAAACCTTATCGGAGAAAGAAGCCATGGGAAGAAGAAAAGTCG 117
Query 61 AGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAATG 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 118 AGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAAAG 177
Query 121 GTCTCATAGACAAAGCTCGACAACTTTCGATTCTCTGTGAATCCTCCGTCGCTGTTGTCG 180
||||||| || ||||||||||||||||| |||||||||||||| ||| ||||||||||||
Sbjct 178 GTCTCATCGAAAAAGCTCGACAACTTTCAATTCTCTGTGAATCTTCCATCGCTGTTGTCG 237
Query 181 TCGTCTCTGCCTCCGGAAAACTCTACGAGTCTTCCTCCGGTGACGAGA--T-AGAAG--C 235
|||||| | ||||||||||||||||| ||| ||||||||||| | | | | ||| |
Sbjct 238 CCGTCTCCGGTTCCGGAAAACTCTACGACTCTGCCTCCGGTGACAACATGTCA-AAGATC 296
Query 236 GCTGGTCAAG-CCGGAGATA-A-C-T-C-AATG-TTTTGAA--CTT-GATCTTGCAGAAA 285
|| || | || ||| | | | | ||| || || ||| |||||||||||||
Sbjct 297 ATTGATC--GTTATGAAATACATCATGCTGATGAACTTAAAGCCTTAGATCTTGCAGAAA 354
Query 286 AAATTCAGAATTATCTTCCACACAAGGAGTTACTAGAGACAGTCCAAAGCAAGCTTGAAG 345
|||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 355 AAATTCGGAATTATCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAGCAAGCTTGAAG 414
Query 346 AACCAAATGTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTCGAGA 405
|| |||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||
Sbjct 415 AATCAAATGTCGATAATGTAAGTGTAGATTCTCTAATATCTATGGAGGAACAGCTCGAGA 474
Query 406 CTGCTCTGTCCGTAAGTAGGGCTAGGAAGGCAGAACTGATGATGGAGTATGTGAAGTC-C 464
|||||||||| |||| ||| |||| |||| ||||||| ||||||||| || ||||||| |
Sbjct 475 CTGCTCTGTCAGTAATTAGAGCTAAGAAGACAGAACTAATGATGGAGGATATGAAGTCAC 534
Query 465 TTAAAAGAAAAGGAGATGTTGCTGAGGGAAGAGAACCAGGTTCTGGCTAGCCAGATGGGG 524
|| || |||| ||||| |||||||| |||||||||||| |||||||||||||| |||||
Sbjct 535 TTCAA-GAAAGGGAGAAGTTGCTGATAGAAGAGAACCAGATTCTGGCTAGCCAGGTGGGG 593
Query 525 AAGAATACGTTGCTGGCAATAGA-GGATGAGAGAGGAATGTTGCCGGAAAGTAGCTCCGG 583
||||| ||||| |||| ||||| || ||| |||||||||| | ||||| | |||||||
Sbjct 594 AAGAAGACGTTTCTGGTTATAGAAGG-TGACAGAGGAATGTCACGGGAAAATGGCTCCGG 652
Query 584 CAACAAAATACCGGAGACTCTCCCGCTGCTCAAGTAACCACCATCATCAACGGCTTGAGT 643
||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 653 CAACAAAGTACCGGAGACTCTTTCGCTGCTCAAGTAATCACCATCATCAACGGCT-GAGC 711
Query 644 TTTCCAGCTTAAACTCA---AC-GCCTGATTCAGAATGAAGAAAACATATTTGTAAATTT 699
|||| | | |||||| | || ||||||||||||| | | || | |||||||||
Sbjct 712 TTTC-ACCATAAACTTACTCACAGCCTGATTCAGAA-GCTTTTA-CAAAATTGTAAATT- 767
Query 700 ATAAAAAGCTG--TA-TAATCTCAAACCTTTT-ATCTTCCTCTAG----TGTGGAATTAA 751
||||||||||| || ||||||||| |||||| ||||||||| | ||||||| |||
Sbjct 768 ATAAAAAGCTGCATAATAATCTCAA-CCTTTTTATCTTCCTCGCGCCAATGTGGAAATAA 826
Query 752 AGGTTAAAA 760
|||| ||||
Sbjct 827 AGGT-AAAA 834
> AT5G65050.3 | Symbols: AGL31, MAF2 | AGAMOUS-like 31 | chr5:25982254-25986326
FORWARD LENGTH=964
Length=964
Score = 710 bits (384), Expect = 0.0
Identities = 664/792 (84%), Gaps = 48/792 (6%)
Strand=Plus/Plus
Query 1 AGGATTAAATTAGGGCATAACCCTTATCGGA-GATTGAAGCCATGGGAAGAAGAAAAA-T 58
||||| ||||||||||| | |||||||||| || ||||||||||| |||| ||||| |
Sbjct 121 AGGATCAAATTAGGGCACCAGCCTTATCGGAGGA-AGAAGCCATGGGTAGAA-AAAAAGT 178
Query 59 CGAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAA 118
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 179 CGAGATCAAGCGAATCGAGAACAAAAGTAGTCGACAAGTCACTTTCTCCAAACGACGCAA 238
Query 119 TGGTCTCATAGACAAAGCTCGACAACTTTCGATTCTCTGTGAATCCTCCGTCGCTGTTGT 178
||||||||| || ||||||||||||||||| |||||||||||||| ||| |||||||| |
Sbjct 239 TGGTCTCATCGAGAAAGCTCGACAACTTTCAATTCTCTGTGAATCTTCCATCGCTGTTCT 298
Query 179 CGTCGTCTCTGCCTCCGGAAAACTCTACGAGTCTTCCTCCGGTGACGAGATAG--AA-GC 235
||||||||| | |||||||||||||||| ||||| ||||||||||| | || | || |
Sbjct 299 CGTCGTCTCCGGCTCCGGAAAACTCTACAAGTCTGCCTCCGGTGACAACAT-GTCAAAGA 357
Query 236 GC-TGG-TCAAGCCGGAGATA-A-C-T-CA-ATGTT-TTGAA-C-TT-GATCTTGCAGAA 284
| | | || || | ||| | | | | ||| ||||| | || ||||||||||||
Sbjct 358 TCATTGATCGTTACGAA-ATACATCATGCTGATGAACTTGAAGCCTTAGATCTTGCAGAA 416
Query 285 AAAATTCAGAATTATCTTCCACACAAGGAGTTACTAGAGACAGTCCAAAGCAAGCTTGAA 344
|||| || ||||||||| |||| ||| ||||||||||| | |||||||||||||||||||
Sbjct 417 AAAACTCGGAATTATCTGCCACTCAAAGAGTTACTAGAAATAGTCCAAAGCAAGCTTGAA 476
Query 345 GAACCAAATGTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTCGAG 404
||| ||||||||||||||| |||||| ||| || ||||||||||||||||||| ||||||
Sbjct 477 GAATCAAATGTCGATAATGCAAGTGTGGATACTTTAATTTCTCTGGAGGAACAGCTCGAG 536
Query 405 ACTGCTCTGTCCGTAAGTAGGGCTAGGAAGGCAGAACTGATGATGGAGTATGTGAAGTCC 464
|||||||||||||||| ||| ||||||||| ||||||| ||||||| | | |||||||||
Sbjct 537 ACTGCTCTGTCCGTAACTAGAGCTAGGAAGACAGAACTAATGATGGGGGAAGTGAAGTCC 596
Query 465 -TTAAAAGAAAAGGAGATGTTGCTGAGGGAAGAGAACCAGG-TTCTGGCTAGCCAGATGG 522
|| ||| ||| ||||| |||||||| |||||||||||| || ||||||||||| |||
Sbjct 597 CTTCAAA-AAACGGAGAACTTGCTGAGAGAAGAGAACCAGACTT-TGGCTAGCCAGGTGG 654
Query 523 GGAAGAATACGTTGCTGGCAATAGA-GGATGAGAGAGGAATGT--TGCCGGAAAGTAGCT 579
||||||| ||||| |||| ||||| || ||| |||||||||| || ||||| | |||
Sbjct 655 GGAAGAAGACGTTTCTGGTTATAGAAGG-TGACAGAGGAATGTCATG--GGAAAATGGCT 711
Query 580 CCGGCAACAAAATACCGGAGACTCTCCCGCTGCTCAAGTAACCACCATCATCAACGGCTT 639
||||||||||| ||| ||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 712 CCGGCAACAAAGTACGGGAGACTCTTCCGCTGCTCAAGTAATCACCATCATCAACGGCT- 770
Query 640 GAGTTTTCCAGCTTAAACTCA-ACGCCTGATTCAGAATGAAGAAAACATATTTGTAAATT 698
||| |||| | |||||||| | | ||||||||||||| | | || |||||||||||
Sbjct 771 GAGCTTTC-ACCTTAAACTTACA-GCCTGATTCAGAA-GTTTTTA-CAAATTTGTAAATT 826
Query 699 TATAAAAAGCTG--TA-TAATCTCAAACCTTTT-ATCTTCCTCTAG----TGTGGAA-TT 749
|||||||||| || ||||||||| |||||| ||||||||| | ||||||| ||
Sbjct 827 -ATAAAAAGCTTCATAATAATCTCAA-CCTTTTTATCTTCCTCGCGCCAATGTGGAAATT 884
Query 750 AAAGGTTAAAAA 761
|| |||||||||
Sbjct 885 AA-GGTTAAAAA 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41342702981
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5