BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476876
Length=2105
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77130.1 | Symbols: PGSIP2, GUX3 | plant glycogenin-like sta... 3288 0.0
AT1G77131.1 | Symbols: | pseudogene of PGSIP, glycogenin gluco... 1812 0.0
AT3G18660.2 | Symbols: PGSIP1, GUX1 | plant glycogenin-like sta... 265 2e-69
> AT1G77130.1 | Symbols: PGSIP2, GUX3 | plant glycogenin-like starch
initiation protein 2 | chr1:28978894-28981345 REVERSE
LENGTH=2146
Length=2146
Score = 3288 bits (1780), Expect = 0.0
Identities = 2006/2115 (95%), Gaps = 15/2115 (1%)
Strand=Plus/Plus
Query 1 AAATCCCTAAAATGTCTCGTCTCATG-T-TATA--AGGCGATAATGAAATTCTCGAAACC 56
|||||||||||||||||||||| || | | || ||||||| |||||||||||||||||
Sbjct 37 AAATCCCTAAAATGTCTCGTCTTTTGTTGTTTACCAGGCGATTATGAAATTCTCGAAACC 96
Query 57 GACCCTGATCTTACGGAGACAATGATACCTTCCTCAAGTCCCATGGAGTCAAGACATCGA 116
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 97 GACCCTGGTCTTACGGAGACGATGATACCTTCCTCAAGTCCCATGGAGTCAAGACATCGA 156
Query 117 CTCTCGTTTTCAAATGAGAAGTCAACTAGGAGGAGATTTCAAAGAATTGAAAAGGGTGTC 176
|||||||| |||||||||||| ||| |||||||||||||||||||||||| |||||||||
Sbjct 157 CTCTCGTTCTCAAATGAGAAGACAAGTAGGAGGAGATTTCAAAGAATTGAGAAGGGTGTC 216
Query 177 AAGTTCAATACTCTGAAACTTGTGTTGATTTGTATTATGCTTGGAGCTTTGTTCACCATC 236
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 217 AAGTTCAACACTCTGAAACTTGTGTTGATTTGTATAATGCTTGGAGCTTTGTTCACGATC 276
Query 237 TACCGTTTTCGTTATCCACCGCTACAAATTGCTGAGATTCCAACTAGTTTTGGTGTTACT 296
|||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 277 TACCGTTTTCGTTATCCACCGCTACAAATTCCTGAAATTCCAACTAGTTTTGGTCTTACT 336
Query 297 ACTGATCCTCGCTATGTAGCTACAGCTGAGATCAACTGGAACCATGTGTCAAATCTTGTT 356
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 337 ACTGATCCTCGCTATGTAGCTACAGCTGAGATCAACTGGAACCATATGTCAAATCTTGTT 396
Query 357 GAGAAGCACTTATTTGGTAGAACCGAGTATCAAGGAATTGGCCTTATAAATCTTCACGAT 416
||||||||| |||||||||||| |||||||||||||||||| |||||||||||| |||||
Sbjct 397 GAGAAGCACGTATTTGGTAGAAGCGAGTATCAAGGAATTGGTCTTATAAATCTTAACGAT 456
Query 417 AACGAGATTGATCGGTTCAAGGAGGTTATGAAATCTGACTGTGATCATGTAGCTTTGCAT 476
|||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 457 AACGAGATTGATCGATTCAAGGAGGTAACGAAATCTGACTGTGATCATGTAGCTTTGCAT 516
Query 477 CTACACTATGCTGCAAAGAATATTACATGGGAATCTCTATACCCGGAATGGATTGACGAA 536
||| | |||||||||||||| || |||||||||||| ||||||||||||||||||| |||
Sbjct 517 CTAGATTATGCTGCAAAGAACATAACATGGGAATCTTTATACCCGGAATGGATTGATGAA 576
Query 537 GTAGAAGAATTCGAAGTCCCTACTTGTCCTTCTCTTCCTTTGATTCAAGTTCCTGGCAAG 596
|| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 577 GTTGAAGAATTCGAAGTCCCTACTTGTCCTTCTCTGCCTTTGATTCAAATTCCTGGCAAG 636
Query 597 CCTCGCATCGATCTTGTCATTGCCAAGCTTCCGTGTGACAAATCAGGAAAATGGTCAAGA 656
||||| || |||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 637 CCTCGGATTGATCTTGTAATTGCCAAGCTTCCGTGTGATAAATCAGGAAAATGGTCTAGA 696
Query 657 GATGTGGCTCGATTGCATTTACAACTTTCTGCAGCTCGAGTGGCGGCTTCTTCTAAAGGG 716
||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 697 GATGTGGCTCGCTTGCATTTACAACTTGCAGCAGCTCGAGTGGCGGCTTCTTCTAAAGGA 756
Query 717 CTTCATGATGTTCATGTGATTTTGGTATCTGATTGCTTTCCAATTCCAAATCTTTTTACC 776
|||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 757 CTTCATAATGTTCATGTGATTTTGGTATCTGATTGCTTTCCAATACCGAATCTTTTTACG 816
Query 777 GGTCAAGAACTTGTTGCCCGTCAAGGAAACATATGGCTGTATAAGCCTAACCTACACCAG 836
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 817 GGTCAAGAACTTGTTGCCCGTCAAGGAAACATATGGCTGTATAAGCCTAATCTTCACCAG 876
Query 837 CTAAGACAAAAGTTACAGCTTCCTGTTGGTTCATGTGAACTTTCTGTTCCTCTTCAAGCT 896
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 877 CTAAGACAAAAGTTACAGCTTCCTGTTGGTTCCTGTGAACTTTCTGTTCCTCTTCAAGCT 936
Query 897 AAAGATAATTTCTACTCCGCAAGTGCAAAGAAAGAAGCTTATGCGACTATCTTGCATTCT 956
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 937 AAAGATAATTTCTACTCCGCAGGTGCAAAGAAAGAAGCTTACGCGACTATCTTGCATTCT 996
Query 957 GCTCAATTTTATGTCTGTGGAGCCATTGCAGCTGCGCAGAGCATTCGAATGTCAGGCTCT 1016
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 997 GCCCAATTTTATGTCTGTGGAGCCATTGCAGCTGCACAGAGCATTCGAATGTCAGGCTCT 1056
Query 1017 ACTCGTGATCTGGTCATACTTGTTGATGATACGATAAGCGAATACCATAAAAGTGGCTTG 1076
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1057 ACTCGTGATCTGGTCATACTTGTTGATGAAACGATAAGCGAATACCATAAAAGTGGCTTG 1116
Query 1077 GTAGCTGCTGGATGGAAGATTCACATGTTTCAAAGAATCAGGAACCCGAATGCTATACCA 1136
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1117 GTAGCTGCTGGATGGAAGATTCAAATGTTTCAAAGAATCAGGAACCCGAATGCTGTACCA 1176
Query 1137 AATGCATACAACGAATGGAACTACAGCAAGTTCCGTCTTTGGCAATTGACTGAATACAGT 1196
||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1177 AATGCCTACAACGAATGGAACTACAGCAAGTTTCGTCTTTGGCAACTGACTGAATACAGT 1236
Query 1197 AAGATCATCTTCATCGATGCAGACATGCTTATCCTGAGAAACATTGATTTCCTCTTCGAG 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 AAGATCATCTTCATCGATGCAGACATGCTTATCCTGAGAAACATTGATTTCCTCTTCGAG 1296
Query 1257 TTCCCTGAGATATCTGCAACTGGAAACAATGCTACGCTCTTCAACTCCGGTCTAATGGTG 1316
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1297 TTCCCTGAGATATCAGCAACTGGAAACAATGCTACGCTCTTCAACTCTGGTCTAATGGTG 1356
Query 1317 GTTGAGCCATCTAATTCAACATTCCAGTTACTAATGGACAACATTAATGAAGTTGTGTCT 1376
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1357 GTTGAGCCATCTAATTCAACATTCCAGTTACTAATGGATAACATTAATGAAGTTGTGTCT 1416
Query 1377 TACAACGGAGGAGACCAAGGTTACCTTAACGAGATATTCACATGGTGGCATCGCATCCCG 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1417 TACAACGGAGGAGACCAAGGTTACCTTAACGAGATATTCACATGGTGGCATCGGATTCCA 1476
Query 1437 AAACACATGAATTTCTTGAAGCATTTCTGGGAAGGAGACGAACCTGAGAT-AAAGAAAAT 1495
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1477 AAACACATGAATTTCTTGAAGCATTTCTGGGAAGGAGACGAACCTGAGATTAAA-AAAAT 1535
Query 1496 GAAGACGAGTCTATTTGGAGCTGATCCTCCTATCCTCTACGTTCTTCATTACCTTGGTTA 1555
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 1536 GAAGACGAGTCTATTTGGAGCTGATCCTCCGATCCTATACGTTCTTCATTACCTAGGTTA 1595
Query 1556 TAACAAACCCTGGTTATGCTTCAGAGACTATGATTGCAACTGGAATGTCGATATTTTCCA 1615
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1596 TAACAAACCCTGGTTATGCTTCAGAGACTATGACTGCAATTGGAATGTCGATATTTTCCA 1655
Query 1616 GGAATTCGCAAGTGACGAAGCACATAAAACATGGTGGAGAGTGCACGACGCAATGCCTGA 1675
|||||| || |||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 1656 GGAATTTGCTAGTGACGAGGCTCATAAAACCTGGTGGAGAGTGCACGACGCAATGCCTGA 1715
Query 1676 GAACTTGCACAAGTTCTGTCTTCTGAGATCGAAACAGAAGGCGCAACTTGAATGGGATCG 1735
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| |
Sbjct 1716 AAACTTGCATAAGTTCTGTCTACTAAGATCGAAACAGAAGGCGCAACTTGAATGGGATAG 1775
Query 1736 GAGACAAGCAGAGAAAGGGAATTACAAAGATGGACACTGGAAGATAAAGATCAAAGATGA 1795
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 1776 GAGACAAGCAGAGAAAGGGAACTACAAAGATGGACATTGGAAGATAAAGATCAAAGAC-A 1834
Query 1796 A-AGACTTAAGACTTGTTTCGAAGATTTCTGTTTTTGGGAGAGTATGCTTTGGCATTGGG 1854
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1835 AGAGACTTAAGACTTGTTTCGAAGATTTCTGCTTTTGGGAGAGTATGCTTTGGCATTGGG 1894
Query 1855 GTGAGACGAA-TGCTACCAATAATTCTTCCACCACCACCACTTCATCACCACCGCATAAA 1913
|||||||||| | ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1895 GTGAGACGAACT-CTACCAACAATTCTTCCACCACCACCACTTCATCACCGCCGCATAAA 1953
Query 1914 ACCGCTCTCTCTTCCCTGTGAATTCTTTTGGCTTTC-G-TTTAGTACAAAATTACTCTTC 1971
||||||||| |||||||||||||||||||||||||| | ||| ||||||| ||||||| |
Sbjct 1954 ACCGCTCTCCCTTCCCTGTGAATTCTTTTGGCTTTCTGGTTTGGTACAAA-TTACTCTGC 2012
Query 1972 -TTTCACCAACCAAATGTGGGTTGGTTATGTTCttttgttttttgttttATCAGCTTGAA 2030
|||| ||||||||||||||||||| |||||||||||||||||| | |||||||||||||
Sbjct 2013 CTTTCGCCAACCAAATGTGGGTTGGATATGTTCTTTTGTTTTTT-TATTATCAGCTTGAA 2071
Query 2031 ACCTGTATACGAATCCCAGAAACAATGTAATCATGAGGGGATAAAGGAATGAAAGACAAA 2090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2072 ACCTGTATACGAATCCCAGAAACAATGTAATCATGAGGGGATAAAGGAATGAAAGACAAA 2131
Query 2091 TGCAGAATTTACAGG 2105
| ||||||||||||
Sbjct 2132 TAAAGAATTTACAGG 2146
> AT1G77131.1 | Symbols: | pseudogene of PGSIP, glycogenin glucosyltransferase
| chr1:28981414-28983463 REVERSE LENGTH=1955
Length=1955
Score = 1812 bits (981), Expect = 0.0
Identities = 1389/1586 (88%), Gaps = 28/1586 (2%)
Strand=Plus/Plus
Query 290 TGTTACTACTGATCCTCGCTATGTAGCTACAGCTGAGATCAACTGGAACCA-TGTGTCAA 348
||| || || |||||||||||| |||||||| |||||||||||||||| || | |||||
Sbjct 254 TGTAACCACAGATCCTCGCTATATAGCTACATCTGAGATCAACTGGAA-CAGTATGTCAC 312
Query 349 ATCTTGTTGAGAAGCACTTATTTGGTAGAACCGAGTATCAAGGAATTGGCCTTATAAATC 408
| |||||||| | |||||| ||| |||| ||||||||||||||||||| || ||||||
Sbjct 313 TTGTTGTTGAGCATTACTTATCTGGCAGAAGCGAGTATCAAGGAATTGGCTTTCTAAATC 372
Query 409 TTC-ACGATAACGAGATTGATCGGT-TCAAGGAGGTTATGAAATCTGACTGTGATCATGT 466
|| |||||||||||||| |||| | | ||| ||| || |||||| ||||| | ||| |
Sbjct 373 -TCAACGATAACGAGATTAATCGATGGC-AGGTGGTCATAAAATCTCACTGTCAGCATAT 430
Query 467 AGCTTTGCATCTACACTATGCTGCAAAG-AATATTACATGGGAATCTCTATACCCGGAAT 525
||||||||||||| || ||||||| ||| || || || ||| ||||| ||||||||||||
Sbjct 431 AGCTTTGCATCTAGACCATGCTGC-AAGTAACATAACTTGGAAATCTTTATACCCGGAAT 489
Query 526 GGATTGACGAAGTAGAAGAATTCGAAGTCCCTACTTGTCCTTCTCTTCCTTTGATTCAAG 585
|||||||||| | |||| ||||| ||||||| ||||||||||||||||||| ||||||||
Sbjct 490 GGATTGACGAGGAAGAAAAATTCAAAGTCCCCACTTGTCCTTCTCTTCCTTGGATTCAAG 549
Query 586 TTCCTGGCAAGCCTCGCATCGATCTTGTCATTGCCAAGCTTCCGTGTGACAAATCAGGAA 645
|||||| |||| |||| ||||||||| ||||||||||||| || ||| |||| |||||||
Sbjct 550 TTCCTGACAAGTCTCGAATCGATCTTATCATTGCCAAGCTCCCATGTAACAAGTCAGGAA 609
Query 646 AATGGTCAAGAGATGTGGCTCGATTGCATTTACAACTTTCTGCAGCTCGAGTGGCGGCTT 705
|||||||||||||||||||| ||||||| ||||||||| | ||||||||||||||||| |
Sbjct 610 AATGGTCAAGAGATGTGGCTAGATTGCACTTACAACTTGCAGCAGCTCGAGTGGCGGCAT 669
Query 706 CTTCTAAAGGGCTTCATGATGTTCATGTGATTTTGGTATCTGATTGCTTTCCAATTCCAA 765
||||| |||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 670 CTTCTGAAGGGCTTCATGATGTTCATGTGATTTTGGTATCAGATTGCTTTCCAATACCGA 729
Query 766 ATCTTTTTACCGGTCAAGAACTTGTTGCCCGTCAAGGAAACATATGGCTGTATAAGCCTA 825
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 ATCTTTTTACGGGTCAAGAACTTGTTGCCCGTCAAGGAAACATATGGCTGTATAAGCCTA 789
Query 826 ACCTACACCAGCTAAGACAAAAGTTACAGCTTCCTGTTGGTTCATGTGAACTTTCTGTTC 885
| || |||||| |||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 790 AACTTCACCAGTTAAGACAAAAGTTACAACTTCCTGTTGGTTCCTGTGAACTTTCTGTTC 849
Query 886 CTCTTCAAGCTAAAGATAATTTCTACTCCGCAAGTGCAAAGAAAGAAGCTTATGCGACTA 945
|||||||||||||||||||||||||||| |||| ||| ||||||||||| || ||||| |
Sbjct 850 CTCTTCAAGCTAAAGATAATTTCTACTCGGCAAATGCCAAGAAAGAAGCGTACGCGACGA 909
Query 946 TCTTGCATTCTGCTCAAT--TTTATGTCTGTGGAGCCATTGCAGCT-GCGCAGAGCATTC 1002
||||||| || | | | | ||| |||||||||||||||||||| | || ||||||||||
Sbjct 910 TCTTGCACTCAGATGA-TGCTTT-TGTCTGTGGAGCCATTGCAG-TAGCACAGAGCATTC 966
Query 1003 GAATGTCAGGCTCTACTCGTGATCTGGTCATACTTGTTGATGATACGATAAGCGAATACC 1062
||||||||||||||||||| || |||| ||||| || |||||| |||| || |||||||
Sbjct 967 GAATGTCAGGCTCTACTCGCAATTTGGTAATACTAGTCGATGATTCGATCAGTGAATACC 1026
Query 1063 ATAAAAGTGGCTTGGTAGCTGCTGGATGGAAGATTCACATGTTTCAAAGAATCAGGAACC 1122
||| ||||||||||| | | ||||||||||||||||||| |||||||||||||| ||||
Sbjct 1027 ATAGAAGTGGCTTGGAATCAGCTGGATGGAAGATTCACACATTTCAAAGAATCAGAAACC 1086
Query 1123 CGAATGCT-ATACCAAATGCATACAACGAATGGAACTACAGCAAGTTCCGTCTTTGGCAA 1181
|||| ||| | | |||||||||| ||| |||||||||||||||| |||||||||||| ||
Sbjct 1087 CGAAAGCTGA-AGCAAATGCATATAACCAATGGAACTACAGCAAATTCCGTCTTTGGGAA 1145
Query 1182 TTGACTGAATACAGTAAGATCATCTTCATCGATGCAGACATGCTTATCCTGAGAAACATT 1241
||||| ||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1146 TTGACAGAATACAACAAGATCATCTTCATTGATGCAGACATGCTTATCCTCAGAAACATG 1205
Query 1242 GATTTCCTCTTCGAGTTCCCTGAGATATCTGCAACTGGAAACAATGCTACGCTCTTCAAC 1301
|||||||||||||||| ||| || || || ||||||||||| | | |||||||||||||
Sbjct 1206 GATTTCCTCTTCGAGTACCCCGAAATCTCCACAACTGGAAACGACGGTACGCTCTTCAAC 1265
Query 1302 TCCGGTCTAATGGTGGTTGAGCCATCTAATTCAACATTCCAGTTACTAATGGA-CAACAT 1360
||||||||||||||| |||| ||||| |||||||||||||||||||||||||| || |||
Sbjct 1266 TCCGGTCTAATGGTGATTGAACCATCAAATTCAACATTCCAGTTACTAATGGATCA-CAT 1324
Query 1361 TAATGA-AGTTG-TGTCTTACAACGGAGGAGACCAAGGTTACCTTAACGAGATATTCACA 1418
|| || | | | || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1325 CAACGATA-TCAAT-TCCTACAATGGAGGAGACCAAGGTTACCTTAACGAGATATTCACA 1382
Query 1419 TGGTGGCATCGCATCCCGAAACACATGAATTTCTTGAAGCATTTCTGGGAAGGAGACGA- 1477
||||||||||| || || ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1383 TGGTGGCATCGGATTCCAAAACACATGAATTTCTTGAAGCATTTCTGGGAAGGAGAC-AC 1441
Query 1478 ACCTGAGATAAAGAAAATG-AAGACGAGTCTATTTGGAGCTGATCCTCCTATCCTCTACG 1536
|||| || | || |||| |||||||| |||||||||||||||||||| || |||||||
Sbjct 1442 ACCTAAGC-ACAGGAAATCTAAGACGAGACTATTTGGAGCTGATCCTCCGATACTCTACG 1500
Query 1537 TTCTTCATTACCTTGGTTATAACAAACCCTGGTTATGCTTCAGAGACTATGATTGCAACT 1596
||||||||||||| ||||| |||||||| ||| |||||||||||||||| |||||||| |
Sbjct 1501 TTCTTCATTACCTAGGTTACAACAAACCATGGGTATGCTTCAGAGACTACGATTGCAATT 1560
Query 1597 GGAATGTCGATATTTTCCAGGAATTCGCAAGTGACGAAGCACATAAAACATGGTGGAGAG 1656
||||||||| | | ||| ||||||| || || |||||||| ||||| ||||||||||
Sbjct 1561 GGAATGTCGTTGGATACCATCAATTCGCGAGCGATGAAGCACACAAAACTTGGTGGAGAG 1620
Query 1657 TGCACGACGCAATGCCTGAGAACTTGCACAAGTTCTGTCTTCTGAGATCGAAACAGAAGG 1716
|||||||||| |||||| |||| ||||| | ||| ||||| ||||| |||||||| ||||
Sbjct 1621 TGCACGACGCGATGCCTAAGAAATTGCAGAGGTTTTGTCTACTGAGTTCGAAACAAAAGG 1680
Query 1717 CGCAACTTGAATGGGATCGGAGACAAGCAGAGAAAGGGAATTACAAAGATGGACACTGGA 1776
|||||||||| ||||||||||||||||| ||||||| |||||||| ||| ||||| ||||
Sbjct 1681 CGCAACTTGAGTGGGATCGGAGACAAGCTGAGAAAGCGAATTACAGAGACGGACATTGGA 1740
Query 1777 AGATAAAGATCAAAGATGAA-AGACTTAAGACTTGTTTCGAAGATTTCTGTTTTTGGGAG 1835
||| |||||||||||| || ||||||| ||||||||| |||||||||||||| ||||||
Sbjct 1741 GGATTAAGATCAAAGAT-AAGAGACTTACGACTTGTTTTGAAGATTTCTGTTTCTGGGAG 1799
Query 1836 AGTATGCTTTGGCATTGGGGTGAGAC 1861
||||||||||||||||||||||||||
Sbjct 1800 AGTATGCTTTGGCATTGGGGTGAGAC 1825
> AT3G18660.2 | Symbols: PGSIP1, GUX1 | plant glycogenin-like starch
initiation protein 1 | chr3:6419031-6421982 REVERSE LENGTH=2183
Length=2183
Score = 265 bits (143), Expect = 2e-69
Identities = 830/1151 (72%), Gaps = 89/1151 (8%)
Strand=Plus/Plus
Query 641 AGGAAAATGGTCAAGAGATGT-GGCTCGATTGCATTTACAACTTTCTGCAGC-TCGAGTG 698
||| || ||||| ||||| || || |||||||| |||| || | || || | |||
Sbjct 698 AGGGAATTGGTCGAGAGACGTCGG-GAGATTGCATCTACAGCTAGCGGCTGCAAC-TGTG 755
Query 699 GCGGCTTCTTCTAAAGGGCTTCATGA-TGTTCATGTGATTTTGGTATCT-GATTGCTTTC 756
|||||||| | |||||| || | | | |||||| |||| |||||| || |||||||
Sbjct 756 GCGGCTTCGGCCAAAGGG-TTTTTCAGGGGACATGTGTTTTTTGTATCTAGA-TGCTTTC 813
Query 757 CAATTCCAAATCTTTTTACC-G-GTCAAGAACTTGTTG-CCCGTCA-AGGAAACATATGG 812
| ||||| |||| |||| || | || |||| |||| || | || | ||| | | |||
Sbjct 814 CGATTCCGAATC-TTTT-CCGGTGTAAAGATCTTG-TGTCTCG-GAGAGGCGATGTTTGG 869
Query 813 CTGTATAAGCCTAA-CCT-ACACCAGCTAAGACAAAAG-TTACAGCTTCCTGTTGGTTCA 869
|||| || ||||| | | | ||| | ||| | ||| || ||||| ||||| || ||
Sbjct 870 TTGTACAAACCTAATCTTGATACC--TTGAGAGACAAGCTT-CAGCTGCCTGTAGGGTCT 926
Query 870 TGTGAACTTTCTGTTCCTCTTCAAGC-T-AAAGATAATTTCTA-CTCCGCAAGTGC-AAA 925
||||| || ||| |||||||| || | ||||| | | | || | || | |||
Sbjct 927 TGTGAGCTATCTCTTCCTCTT--GGCATCCAAGAT-AGGCCAAGCTTAGGAAACCCTAAA 983
Query 926 GAAAGAAGCTTATGCGACTA-TCTTGCATTCTGCTCAATTTTATGTCTGTGGAGCCATTG 984
| ||||||||| || || | |||| || || ||||| |||| ||||| || || || |
Sbjct 984 -AGAGAAGCTTACGCAACAATTCTT-CACTCAGCTCACGTTTACGTCTGCGGTGCAATCG 1041
Query 985 CAGCTGCGCAGAGCATTCGA-ATGTCAGGCTCTACTCGTGATCTGGTCATACTTGTTGAT 1043
| || || |||||||| || | ||| || || || | || || || || |||||||||
Sbjct 1042 CCGCGGCTCAGAGCATAAGACA-GTCTGGTTCGACGAGAGACCTTGTTATCCTTGTTGAT 1100
Query 1044 GA-TACGATAAGCGAATACCATAAAAGTGG-CTTGGTAGCTGCTGGATGG-AAGATTCAC 1100
|| || || |||| ||||| ||||| | | | ||| || || ||| || || |
Sbjct 1101 GACAAC-ATCAGCGGTTACCACCGGAGTGGAC-TAGAAGCCGCGGGTTGGCAA-ATCCGG 1157
Query 1101 ATGTTTCA-AAGAATCAGGAACCCGAATGCTATACCAA-ATGCATACAACGAATGGAACT 1158
| | | || | || || | ||||| || || | | || |||| ||||||||||||||||
Sbjct 1158 ACGATACAGAGGATTC-GAAACCCTAAGGC-AGAGAAAGATGCTTACAACGAATGGAACT 1215
Query 1159 ACAGCAAGTTCCGTCTTTGGCAATTGACTGAATAC-AGTAAGATCATCTTCATCGATGCA 1217
||||||||||||| || ||||| ||||||| ||| | || ||||| |||||||| ||
Sbjct 1216 ACAGCAAGTTCCGGCTATGGCAGCTGACTGATTACGACAAA-ATCATTTTCATCGACGCG 1274
Query 1218 GA-CATGCTTA-TCCTGAGAAACATTGATTTCCTCTTCGAGTTCCCTGAGATATCTGCAA 1275
|| | | |||| || |||||||||| |||||| | ||| | | |||||||| || || |
Sbjct 1275 GATC-T-CTTAATCTTGAGAAACATCGATTTCTTGTTCTCGATGCCTGAGATCTCAGCTA 1332
Query 1276 CTGGAAACAATGCTACGCTCTTCAACTCCGGTCTAATGGTGGTTGAGCCAT-CTAATTCA 1334
| |||||||||| || || || || || || | |||||| | ||||| | | || |
Sbjct 1333 CAGGAAACAATGGAACTCTGTTTAATTCAGGAGTTATGGTGATCGAGCCTTGC-AACTGT 1391
Query 1335 ACATTCCAG-TTACTAATGGACAACAT-TAAT-GA-AGTTGTGTCTTACAACGGAGGAGA 1390
|| || ||| || || ||||| | ||| ||| || | ||| |||||| ||||| |||||
Sbjct 1392 ACGTTTCAGCTT-CTGATGGA-A-CATATAAACGAGA-TTGAGTCTTATAACGGTGGAGA 1447
Query 1391 CCAAGGTTACCTTAA-CGAGATATTCACATGGTGGCATCGCATCCCGAAACACATGAATT 1449
||||||||| |||| |||| |||||||||||||||| || || || ||||| |||||||
Sbjct 1448 TCAAGGTTAC-TTAAACGAGGTATTCACATGGTGGCACCGGATTCCAAAACATATGAATT 1506
Query 1450 TCTTGAAGCATTTCTGGGAA-GGAGACGAACCTGA-GATAAA-GAAAATGAAGAC-GAGT 1505
||||||||||||| ||| | || || ||| ||| | ||| | || ||| || |||
Sbjct 1507 TCTTGAAGCATTTTTGG-ATTGGCGATGAAGATGACGCGAAACGCAA--GAAAACAGAG- 1562
Query 1506 CTATTTGGAGCTGATCCTCCTATCCTCTACGTTCTTCATTACCTTGGTTATAACAAACCC 1565
|| |||||||| || |||||| | || || ||||||||||||||||| || | | ||
Sbjct 1563 CTTTTTGGAGCAGAGCCTCCTGTTCTTTATGTTCTTCATTACCTTGGG-ATGA-AG-CCG 1619
Query 1566 TGGTTATGCTT-CAGAGACTATGATTGCAACTGGAATGTC-GATATTTTCCAGGAATTCG 1623
|||||||| || | | ||||| || || |||| || || || || ||| || || |
Sbjct 1620 TGGTTATG-TTACCGTGACTACGACTGTAACTTCAAC-TCCGACATATTCGTTGAGTTTG 1677
Query 1624 CAAGTGACGAA-GCACATA-AAACATGGTGGA-GAGTGCACGACGCAATGCCTGAG-AAC 1679
| | || | || ||| ||| |||||||| | || |||||||| ||||| || |||
Sbjct 1678 CTACCGAT-ATCGCTCATCGAAA-ATGGTGGATG-GTCCACGACGCCATGCCACAGGAAC 1734
Query 1680 TTGCAC-AAGTTCTGTCTTCT-GAGATCGAAACAGAAGGCGCAACTTGAATGGGATCGGA 1737
|| ||| || |||||| | || | |||| || || ||||| || || |||| |||||
Sbjct 1735 TT-CACCAA-TTCTGT-TACTTGCGATCCAAGCAAAAGGCACAGCTGGAATATGATCGCC 1791
Query 1738 GACAAGCAGAG 1748
| |||||||||
Sbjct 1792 GGCAAGCAGAG 1802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104366933055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5