BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476882
Length=2189
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77180.1 | Symbols: SKIP | chromatin protein family | chr1:2... 3206 0.0
> AT1G77180.1 | Symbols: SKIP | chromatin protein family | chr1:28999608-29002135
REVERSE LENGTH=2229
Length=2229
Score = 3206 bits (1736), Expect = 0.0
Identities = 2052/2202 (93%), Gaps = 32/2202 (1%)
Strand=Plus/Plus
Query 1 AAAGGCTTCACGCCTGATTTCTTTCTTTCCCCAGAAAGAA-GCTTCACCTCCGTTGGTTG 59
|||||||||||||| ||||||||| |||||||||||| || ||||||| |||||| ||||
Sbjct 35 AAAGGCTTCACGCCCGATTTCTTT-TTTCCCCAGAAA-AAGGCTTCACTTCCGTTCGTTG 92
Query 60 TTCTCCATCGCTCTGCGCCGCGTCGCACATCGTTACATCTTTCTCAGAATCCCTCTTCCC 119
|||| ||||| |||||||||| |||||||||||| || ||||||||||||| ||||||||
Sbjct 93 TTCTTCATCGGTCTGCGCCGCCTCGCACATCGTTTCACCTTTCTCAGAATCTCTCTTCCC 152
Query 120 GTCGATTAGTTTCCTCGGAGGTTAGCTTCTTCGATTTGCTGAAAATCTTGATTTAGAGTA 179
|||||||||||||||| |||||| | ||||||| |||||| ||||||||||| ||
Sbjct 153 GTCGATTAGTTTCCTCAGAGGTT-G------CGATTTGTTGAAAACCTTGATTTAGACTA 205
Query 180 TGAAGTCTCTTAATGATCTCCCAGCGCCCAAATCAACCACTACCACGTTTTATGATCATT 239
||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||
Sbjct 206 TGAAGTCTCTTAATGATCTTCCTGCGCCCAAATCAACCACTACCACGTATTATGATCATT 265
Query 240 CTAATGATCCATGGTTCAAAAACCGTGTCACTGAATCCGAGACTGTAAAATCCTCCAGTA 299
|||||||| | |||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 266 CTAATGATGCTTGGTTCAAAAACCGAGTCACTGAATCCGAGACGGTGAAATCCTCCAGTA 325
Query 300 TCAAATTTAAACCCGTGCCTGCTTACCTGAATCGTCAAGGTTTACGTCCCAAGAATCCCG 359
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 326 TCAAATTTAAAGTGGTGCCTGCTTACCTGAATCGTCAAGGTTTACGTCCGAAGAATCCAG 385
Query 360 AGGATTTTGGAGATGGTGGTGCTTTCCCGGAGATTCATCTTCCTCAGTATCCTCTTGGTA 419
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 386 AGGATTTTGGCGATGGTGGTGCTTTCCCGGAGATTCATCTTCCTCAGTATCCTCTTCTTA 445
Query 420 TGGGTAGGAATAAATCCAATAAGCCTGGAGCCAAGACTCTCCCTGTCACTGTCGATGCTC 479
|||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 446 TGGGTAAGAATAAATCCAATAAGCCTGGAGCTAAGACTCTCCCTGTTACTGTCGATGCTC 505
Query 480 AGGGAAACGTGGTCTTTGACGCTATTGTGAGGCAGAATGAGAACTCTAAGAAGATTGTTT 539
||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||
Sbjct 506 AGGGAAACGTGGTCTTTGACGCTATAGTGAGGCAGAATGAGAACTCGAGGAAGATTGTTT 565
Query 540 ACTCTCAGCATAAGGATATTATTCCTAAGATACTGAAAAACGAGGGAGACTTGGATGCGG 599
| ||||||||||||||||||||||| ||| | |||||||||||||||||||||| | | |
Sbjct 566 ATTCTCAGCATAAGGATATTATTCCAAAGTTTCTGAAAAACGAGGGAGACTTGGGTACTG 625
Query 600 TGGTGGACGAAGAGGAGGAATTGCAGAAGCAGATCCAGGAGACTGCTGAGGAAACCAAAG 659
| || || ||||||||||||||||||||| |||| |||||||||||||| ||||| ||||
Sbjct 626 TTGTTGATGAAGAGGAGGAATTGCAGAAGGAGATTCAGGAGACTGCTGAAGAAACGAAAG 685
Query 660 CTGCCATTGAGAAGATTGTGAATGTGAGACTCAGTGCAGCTCAGCCTAGTAATATAGCAA 719
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 686 CTGCCATTGAGAAGATTGTGAATGTGAGACTGAGTGCAGCGCAGCCTAGTAATATAGCAA 745
Query 720 GGCAATCCGGCGACTCTCAGTACATTAAATATAAGCCATCCCAGCAATCTTCTGCCTTCA 779
||||||| || || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 GGCAATCGGGAGATTCACAGTACATTAAATATAAGCCATCCCAGCAATCTTCTGCCTTCA 805
Query 780 ATTCCGGTGCTAAAGAGAGGATCATTAGGATGGTGGAGATGCCTGTAGATCCACTTGATC 839
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 ATTCTGGTGCTAAAGAGAGGATCATTAGGATGGTGGAGATGCCTGTAGATCCACTTGATC 865
Query 840 CACCAAAGTTCAAGCACAAGAGAGTCCCAAAGGCTTCTGGTTCTCCGCCTGTTCCGGTCA 899
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 866 CACCAAAGTTCAAGCACAAGAGAGTCCCAAGGGCTTCTGGTTCTCCGCCTGTTCCGGTCA 925
Query 900 TGCATTCACCGCCCAGGCCTGTTACTGTCAAGGACCAGCAAGACTGGAAAATCCCTCCTT 959
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 926 TGCATTCACCGCCCAGGCCTGTTACCGTCAAGGACCAGCAAGACTGGAAAATCCCTCCTT 985
Query 960 GTATCTCCAATTGGAAGAATCCGAAAGGTTACACAATCCCTCTTGATAAACGTCTAGCTG 1019
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 986 GTATCTCCAATTGGAAGAATCCGAAAGGTTACACAATCCCTCTTGACAAACGTCTAGCTG 1045
Query 1020 CTGATGGAAGAGGCCTACAAGACGTTCAGATCAATGATAACTTTGCCAAGTTATCCGAAG 1079
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1046 CTGATGGAAGGGGCCTACAAGACGTTCAGATCAATGATAACTTTGCCAAGTTATCAGAGG 1105
Query 1080 CCCTCTATGTAGCTGAGCAGAAAGCTAGAGAGGCTGTTTCAATGCGTTCCAAGGTGCAGA 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1106 CCCTCTATGTAGCTGAGCAGAAAGCTAGAGAGGCTGTTTCAATGCGTTCCAAGGTGCAAA 1165
Query 1140 AAGAGATGGTGATGAAGGAGAAGGAAAGGAAAGAGCAGGAATTGAGGGCTCTTGCCCAAA 1199
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 AAGAGATGGTGATGAAGGACAAGGAAAGGAAAGAGCAGGAATTGAGGGCTCTTGCCCAAA 1225
Query 1200 AAGCTCGTTCCGAAAGAACTGGTGCTGCTGGGAGTATGCCTGTCTCATCTGACAGGGGTA 1259
||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1226 AAGCTCGCTCCGAAAGAACCGGTGCTGCTATGAGTATGCCTGTCTCATCTGACAGGGGTA 1285
Query 1260 GGAGTGAAAGTGTTGACCCAAGAGGTGATTATGACAACTATGACCaggagagagtaaggg 1319
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1286 GGAGTGAAAGTGTTGACCCAAGAGGTGATTATGACAACTATGACCAGGATAGAGGAAGGG 1345
Query 1320 aaagagaaagggaagagccgaaagaga-gtagggaggaaagggaggcacggattcagaga 1378
||||||||||||||||||| |||||| | |||||||| ||||| | |||||||||||
Sbjct 1346 AAAGAGAAAGGGAAGAGCCTCAAGAGACG-AGGGAGGAGAGGGAAAAAAGGATTCAGAGA 1404
Query 1379 gagaagatccgagaagagcgtcgcagggaaagagagagggagagaagGTTGGAAGCTAAA 1438
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1405 GAAAAGATACGAGAAGAGCGTCGCAGGGAAAGAGAGAGGGAGAGAAGGTTGGATGCCAAA 1464
Query 1439 GATGCTGCCATGGGGAAGAAGAGCAAGATCACTAGAGACAGAGACCGTGATATCAGTGAG 1498
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1465 GATGCTGCCATGGGGAAGAAGAGCAAGATCACCAGAGACAGAGACCGTGACATCAGTGAG 1524
Query 1499 AAAGTTGCTCTTGGAATGGCATCTACTGGAGGAAAAGGTGGTG---AAGTTATGTATGAT 1555
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1525 AAAGTTGCTCTTGGAATGGCATCTACTGGAGGAAAAGGTGGTGGTGAAGTTATGTATGAT 1584
Query 1556 CAAAGGCTGTTTAACCAGGAGAAAGGAATGGACTCTGGGTTCGCTACTGATGACCAATAC 1615
||| | ||||||||||| || ||||||||||||||||| |||||| ||||||||||||||
Sbjct 1585 CAACGTCTGTTTAACCAAGACAAAGGAATGGACTCTGGTTTCGCTGCTGATGACCAATAC 1644
Query 1616 AA-TGTATATGACAAAGGCTTGTTCACTGCACAACCCACTCTTTCAACGCTGTACAAGCC 1674
|| | |||| |||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 1645 AACT-TATACGACAAAGGCTTGTTCACTGCACAACCAACTCTTTCGACTTTGTACAAGCC 1703
Query 1675 AAAGAAGGATAACGATGAAGAAATGTATGGAAACGCAGATGAGCAGCTCGATAAGATCAA 1734
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1704 AAAGAAGGATAACGATGAAGAAATGTATGGAAACGCTGATGAGCAGCTCGATAAGATCAA 1763
Query 1735 GAACACTGAGAGGTTTAAACCTGACAAAGCTTTCACAGGGGCTTCCGAGAGGGCGGGTAG 1794
||| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1764 GAATACTGAGAGGTTTAAGCCTGACAAAGCTTTCACAGGGGCTTCAGAGAGGGTGGGTAG 1823
Query 1795 TAAGAGAGAACGCCCTGTTGAGTTTGAGAAGGAAGAGGAACAAGATCCTTTCGGTCTTGA 1854
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1824 TAAGAGAGACCGACCTGTTGAGTTTGAGAAGGAAGAGGAACAAGATCCTTTCGGTCTTGA 1883
Query 1855 CAGGTGGGTTTCTGATTTGAAGAAAGGTAAGAAACCTTTGGACAAAATCGGGTCTGGAGG 1914
| ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 1884 GAAGTGGGTTTCTGATTTAAAGAAGGGTAAGAAACCTTTGGACAAGATCGGGTCTGGTGG 1943
Query 1915 AACTATGAGAGCAAGTGGAGGCGGCGGTAGCTCTTCAAGGGA---TGACGACGGCGGTTC 1971
|||||||||||||||||| || || ||||||||||||||||| |||| ||||||||||
Sbjct 1944 AACTATGAGAGCAAGTGGCGGTGGTGGTAGCTCTTCAAGGGACGATGACCACGGCGGTTC 2003
Query 1972 TGGTCGAACCAAGATCAATTTCGAACGCAGT-A--GGCGTTAAAAGTCAAGAACTTAAGA 2028
||||||||||||||||||||||||||||||| | ||||||||||||||||| | || |
Sbjct 2004 TGGTCGAACCAAGATCAATTTCGAACGCAGTGACCGGCGTTAAAAGTCAAGA-C--AA-A 2059
Query 2029 CAATGAAAAAGCTCAGTAACTGATCTTTGATTTCAATATATAACTTGTTATTTTGGATCT 2088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2060 ----GAAAAAGCTCAGTAACTGATCTTTGATTTCAATATATAACTTGTTATTTTGGATCT 2115
Query 2089 GTTGAAACAGTTTGCTTTTGATTATCAGTATTTATGTTGTTGTGAGTCTCTGAA-CTAGT 2147
||| |||||||||||||| |||||||||||||||||||||||||||||||| || ||| |
Sbjct 2116 GTTAAAACAGTTTGCTTTGGATTATCAGTATTTATGTTGTTGTGAGTCTCTTAAACTACT 2175
Query 2148 CGAGTACAATCTTTCAACTTCATAATATCACATCTTTTGAGC 2189
||| |||||||||||| ||||||||||||| |||||||||||
Sbjct 2176 CGAATACAATCTTTCAGCTTCATAATATCAGATCTTTTGAGC 2217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108583778835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5