BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476891
Length=2382
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77280.1 | Symbols: | Protein kinase protein with adenine n... 1932 0.0
> AT1G77280.1 | Symbols: | Protein kinase protein with adenine
nucleotide alpha hydrolases-like domain | chr1:29031468-29035882
REVERSE LENGTH=2385
Length=2385
Score = 1932 bits (1046), Expect = 0.0
Identities = 1122/1160 (97%), Gaps = 0/1160 (0%)
Strand=Plus/Plus
Query 1223 ACAATAGTCCAAGAAAATTGCCAGAGGAATTAGAGGGACTTTATGAGAGGTTCTCTTCAA 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 ACAATAGTCCAAGAAAATTGCCAGAGGAATTAGAGGGACTTTATGAGAGGTTCTCTTCAA 1285
Query 1283 CTTGCCGGTTTTTCAAGTACAAGGAACTCGTTTCAGTGACATCGAATTTCTCCGCTGATA 1342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 CTTGCCGGTTTTTCAAGTACAAGGAACTCGTTTCAGTGACATCGAATTTCTCCGCTGATA 1345
Query 1343 ATTTTATCGGGAAAGGTGGCAGCAGCCGGGTTTATAGAGGTTGTTTGTCCAATGGAAGAT 1402
||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1346 ATTTTATTGGGAAAGGAGGCAGCAGCCGGGTTTTTAGAGGTTGTTTGTCCAATGGAAGAG 1405
Query 1403 TGGTTGCTGTGAAAATTCTCAAGCAAACCGAAGATGTCTTGAATGATTTCGTGGCTGAGA 1462
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1406 TGGTTGCTGTGAAGATTCTCAAGCAAACCGAAGATGTCTTGAATGACTTCGTGGCTGAGA 1465
Query 1463 TTGAGATCATCACAACACTACACCATAAGAACATTATCTCCCTCTTAGGATTTTGCTTTG 1522
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1466 TTGAGATCATCACAACATTACACCATAAGAATATTATCTCCCTCTTAGGATTTTGCTTTG 1525
Query 1523 AAGACCACAACCTATTACTTGTATACAATTATCTCTCAAGAGGAAGCCTCGAAGAGAACC 1582
||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1526 AAGACCATAACCTTTTACTTGTATACAATTATCTCTCAAGAGGAAGCCTTGAAGAGAACC 1585
Query 1583 TTCACGGAAATAAGAAAGATCCTCTTGCATTTTGTTGGAGCGAGAGGTATAAAGTGGCTG 1642
|||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1586 TTCATGGAAACAAGAAAGATCCGCTTGCATTTTGTTGGAGCGAGAGGTATAAAGTGGCTG 1645
Query 1643 TGGGAGTAGCAGAGGCACTGGACTACCTGCATAATACTGCTTCACAACCCGTCATCCACA 1702
||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1646 TGGGAGTAGCAGAGGCATTGGACTATCTGCATAATACTGCTTCGCAACCCGTCATCCACA 1705
Query 1703 GAGATGTTAAGTCATCAAACATACTATTATCTGATGATTTTGAGCCACAGCTTTCTGATT 1762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1706 GAGATGTTAAGTCATCAAACATACTATTATCTGATGATTTTGAGCCACAGCTTTCTGATT 1765
Query 1763 TTGGGCTTGCGAGGTGGGCGTCTATATCTACAACACACATAATCTGCTCTGATGTCGCTG 1822
|||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1766 TTGGACTTGCAAGGTGGGCGTCTATATCTACGACACACATAATCTGCTCTGATGTCGCGG 1825
Query 1823 GAACTTTTGGATACTTGGCTCCAGAATACTTCATGTATGGTAAGGTGAACGATAAGATAG 1882
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1826 GAACTTTTGGATACTTGGCTCCAGAGTACTTCATGTATGGTAAGGTGAATGATAAGATAG 1885
Query 1883 ATGTGTATGCATTCGGCGTTGTTCTCCTCGAGTTACTTTCGGGAAGAAAACCGATTAGCA 1942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1886 ATGTGTATGCATTCGGCGTTGTTCTCCTCGAGTTACTTTCGGGAAGAAAACCGATTAGCA 1945
Query 1943 GTGGATGTCCAAAGGGACAAGAGAGTCTAGTCATGTGGGCCAAACCAATTCTAGATGATG 2002
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1946 GCGGATGTCCAAAGGGACAAGAGAGTCTAGTCATGTGGGCCAAACCAATTCTAGATGATG 2005
Query 2003 GAAAGTATTCTCAGTTATTAGACCCGAGTTTGCGGGATAACAACAACAACAATGATGACC 2062
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2006 GAAAGTATTCTCAGTTATTAGACCCGAGTTTGCGGGATAACAACAACAATAATGATGACC 2065
Query 2063 AAATGCAGAGGATGGCGTTAGCTGCTACTCTTTGTATTCGACGTAGCCCTCAAGCTAGAC 2122
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2066 AAATGCAGAGGATGGCGTTAGCTGCTACTCTTTGTATTCGACGTAGTCCTCAAGCTAGAC 2125
Query 2123 CAAAAATGAGCATCGTATTAAAGCTGCTTAAAGGTGATGAAGAAACACTTGAGTGGGCAA 2182
| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 2126 CGAAAATGAGCATCGTATTAAAGCTACTTAAAGGTGATGAAGACACGCTTGAGTGGGCAA 2185
Query 2183 TGCAACAAGTGAGTAGTTCATCAGAGGAGTCAGAGATGCTCAAAGATGAGCAATGCCAAA 2242
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2186 TGCAGCAAGTGAATAGTTCATCAGAGGAGTCAGAGATGCTCAAAGATGAGCAATGCCAAA 2245
Query 2243 GATCAAACTTGCAATCACACCTTAACTTAGCACTTCTTGATGTTGAAGATGACTCGATCT 2302
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2246 GATCTAACTTGCAATCACACCTTAACTTAGCACTTCTTGATGTTGAAGATGACTCAATCT 2305
Query 2303 CCATGGGAAGTATCGAGCAAGGCGTCTCTGTTGAGGATTATCTAAAAGGCAGGACAAGCC 2362
|||||||||| || |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 2306 CCATGGGAAGCATTGAGCAAGGTGTCTCTGTTGAGGATTATCTAAAAGGTAGGACAAGCC 2365
Query 2363 GTTCTTCGAGCTTCGACTAA 2382
||||||||||||||||||||
Sbjct 2366 GTTCTTCGAGCTTCGACTAA 2385
Score = 1779 bits (963), Expect = 0.0
Identities = 1135/1212 (94%), Gaps = 35/1212 (3%)
Strand=Plus/Plus
Query 29 ATGAGGTAGACGCTGACGCATGCCTTTCGGATTTAGTTGACGTGTCGTTTCTCGCTACTA 88
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 8 ATGAGGTAGACGGTGACGCATGGCTTTCGGATTTAGTTGACGTGTCGTTTCTCGCTACTA 67
Query 89 AAAC-G--G------CAGAGATGATAGAAACCGGCGGAGATAAACGGAGCTCCGTCGAGG 139
|||| | | |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 68 AAACGGCAGAACAATCAGAGATGATAGAAACCGGCGGAGATAAACAGAGCTCCGTCGAGG 127
Query 140 AAGGAGGAGGAGGTGGTCGTACGATTCTTGTCGGCGTGAAGCTTGATGCTCCGAGCAGAG 199
| |||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 128 -A--AGGATGTGGTGGCCGTACGATTCTTGTCGGCGTGAAGCTTGACGCTCCGAGCAGAG 184
Query 200 AGTTACTCACTTGGGCTTTGGTTAAAGTCGCTGAGCCTGGTGATACTGTGATCGCTCTTC 259
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 AGTTACTCACTTGGGCTCTGGTTAAAGTCGCTGAGCCTGGTGATACTGTGATCGCTCTTC 244
Query 260 ATATCCTTGGAAATGAGATTGTGGATCGAGCAGGGAACTCTTCGCTTCTATCTCTGGTCA 319
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 245 ATATCCTTGGAAATGAGATTGTGGATCGCGCAGGGAACTCTTCGCTTCTCTCTCTGGTTA 304
Query 320 AAACTTTCGACTCTGTTCTTGACGTTTATGAAGGTTTCTGCAATTTGAAACAGGTGGATC 379
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 GAACTTTCGACTCTGTTCTTGACGTTTATGAAGGTTTCTGCAATTTGAAACAGGTGGATC 364
Query 380 TGAAGCTGAAGCTATGTCGTGGTTCCTCTGCTCGAAAGATTATAGTTAGAGAAGCGAAAT 439
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 365 TGAAGCTGAAGCTATGTCGTGGTTCCTCTGCTCGAAAGATTTTAGTTAGGGAAGCGAAAT 424
Query 440 CGTTTTCTGCAACGAAAGTTTTAGTTGGGATTTCTAAAAGTCACCACACGATTCGTTCAT 499
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 425 CGTTTTCTGCAACGAAAGTTTTAGTTGGGATTTCAAAAAGTCACCACGCGATTCGTTCAT 484
Query 500 CAGCATCTGTAGCTAAGTACATAGCGAAGAAACTATCAAAGGATTGTTGGGTTATTGCTG 559
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 CAGCTTCTGTAGCTAAGTACATAGCGAAGAAACTATCAAAGGATTGTTGGGTTATTGCTG 544
Query 560 TAAACAACGGTAAAATCTTGTTCCAAAAAGAAGGTTCTCCATCATCTACCATTAATCAAT 619
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 545 TAAACAATGGTAAAATCTTGTTCCAAAAGGAAGGTTCTCCATCATCTACCATTAATCAAT 604
Query 620 CTCAAGTGGTTGAAGAAACTGTTAATTGGGTTTGGTT-TATAGGAAAGGAAGATGTTCGG 678
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 605 CTCAAGTGGTTGAAGAAACTGTTA-TTGGGTTTGGTTATATAGGAAAGGAAGATGTTCGG 663
Query 679 AGGATTACTTTGTTGAATGTGCTTCAGAGATCAGTTACATTGAATAAGACTACTAAAGTA 738
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 664 AGGATTACTTTGTTGAATGTGCTTCAGAGATCTGTTACATTGAATAAGACTACTAAAGTA 723
Query 739 GTTAGCCATTCTGAGGAAGATTC---C---AAGGAGGATGATGAGGATCAATCCGGTGGC 792
||||||||||||||||||||||| | |||||||| || ||||||||| || |||||
Sbjct 724 GTTAGCCATTCTGAGGAAGATTCTAACTCTAAGGAGGAGGAGGAGGATCAAGCCTGTGGC 783
Query 793 CAGAATCTACGGCAAGTCTTAGCCGCTGCTCGTTTGGAGAATTGCTCGGTTTGTGGTTCG 852
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 784 CAGAATCTACGGCAAGTCTTAGCGGCTGCTCGTTTGGAGAATTGCTCGGTTTGTGGTTTT 843
Query 853 GATTCTTTGTCTCCCAACAATACAACAACTCCTGGAAAGTTGTCTGGAGCATCAGATTTT 912
|||||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||
Sbjct 844 GATTCTTTGTCTCCGAACGATACAACTACTCCTGGAAAGTTGTCTGGAGCTTCAGATTTT 903
Query 913 GATAGGAGTGAAGATGATGATGAGTGCCACAAAGAAATGGAGATTGTACCTGTGAATGGT 972
||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||
Sbjct 904 GATAGGAGTGAAGATGATGATGAGTGCAACAAAGCAATGGAGATTGTGCCTGTGAATGGT 963
Query 973 CCAGAAGATTCAGGCGGTTCTATTACTATGTTGGTTAGGAAATTGCCTGAACCTAGACCA 1032
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 964 TCAGAAGATTCAGGCGGTTCTGTAACTATGTTGGTTAGGAAATTGCCTGAACCTAGACCA 1023
Query 1033 GGTTGGCCTTTGCTTCGTCGTGCTGTTTCTACGTTAGGACAATCTGTTACTCCTCATAGA 1092
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1024 GGTTGGCCTTTGCTTCGTCGTGCTGTTTCTACATTAGGACAATCTGTTACTCCTCATA-A 1082
Query 1093 CCTTCGTCTAAACAGATACCGGTAGTTCAATGGGCTTTGAAGCTTCCTCCTAGGGATACT 1152
| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 -----G---A------TACCGGTAGTTCAATGGGCTTTGAAGCTTCCTCCTAGGGATACT 1128
Query 1153 AAGCAACTTGGTTATGATTATTCTGAAGATAATTTGTCAAGTTTAAACGCAATTGTTCCA 1212
||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct 1129 AAGCAACTTGGTTATGATTCTTCTGAAGATAATTTGTCAACCTTAAACGCACTTGTTCCA 1188
Query 1213 TTTGGTATCAAC 1224
||||||||||||
Sbjct 1189 TTTGGTATCAAC 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118272484020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5