BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476903
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77390.1 | Symbols: TAM, CYCA1;2, DYP, CYCA1 | CYCLIN A1;2 |... 2074 0.0
> AT1G77390.1 | Symbols: TAM, CYCA1;2, DYP, CYCA1 | CYCLIN A1;2
| chr1:29081904-29084285 REVERSE LENGTH=1477
Length=1477
Score = 2074 bits (1123), Expect = 0.0
Identities = 1326/1422 (93%), Gaps = 22/1422 (2%)
Strand=Plus/Plus
Query 16 TCTCTCTCT-GCAGAACAGAAACCCTAAATCTCACCGGAAAACGATAACGCCGAGCC-G- 72
|||| |||| |||||| |||||||||||||||||||||||||||| ||||||||||| |
Sbjct 64 TCTCACTCTCGCAGAAGAGAAACCCTAAATCTCACCGGAAAACGAGAACGCCGAGCCTGA 123
Query 73 GAGA-TTTCCATTTCTTCTTCAACAATGTCTTCTTCGTCTTCATCGAAGAACCTACCTCA 131
|| | |||| ||| |||| |||||||||||||||||||| | | | || ||| ||||
Sbjct 124 GATATTTTCGATTGCTTCATCAACAATGTCTTCTTCGTC--GA--G-A-AATCTATCTCA 177
Query 132 GGAGAATCCGATTCCTCGTCCGAACTTAGCCAAGACTCGAACCTCACTCCGCGATGTTGG 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GGAGAATCCGATTCCTCGTCCGAACTTAGCCAAGACTCGAACCTCACTCCGCGATGTTGG 237
Query 192 AAACCGTCGTGTTCCTCTCGGCGACATCACAAATCAGAAGACTGGATCAAGAAATTCTTC 251
||||||||||| ||| ||||||||||||||||||||||||| |||||| |||||| ||||
Sbjct 238 AAACCGTCGTGCTCCCCTCGGCGACATCACAAATCAGAAGAATGGATCTAGAAATCCTTC 297
Query 252 TTCGTCGTCTACTCTGGTTCATTGTTCGAATAAGATCTCCCAATCGAAGAAAGCATCAAA 311
|||||||||||||||| ||||||| ||||||||| |||||| ||||||||| ||||
Sbjct 298 ACCGTCGTCTACTCTGGTGAATTGTTCAAATAAGATCGGCCAATCTAAGAAAGCACCAAA 357
Query 312 GCCTGCTTTATCTCGTAATTGGAATTTGGGAATTCTCGATTGCGGTTTACCTCCCAAGTC 371
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 358 ACCTGCTTTATCTCGTAATTGGAATTTGGGAATTCTCGATTCCGGTTTACCTCCCAAGCC 417
Query 372 AAATGCGAATTCAAACATAATCGTTCCTTACGAAGACACCGAATTGCCT-CAAATCGATG 430
||||||||| |||||||||||||||||||||||||||||||||||| || |||| |||||
Sbjct 418 AAATGCGAAATCAAACATAATCGTTCCTTACGAAGACACCGAATTG-CTCCAAAGCGATG 476
Query 431 ATAGTCTTCTATCTTCATCACCTGGATTAT-CTGTTGATGCCTCTCCTACTCACTCAGAC 489
|||||||||||| ||| ||||||| ||||| || | ||||||||||||||||| || |||
Sbjct 477 ATAGTCTTCTATGTTCTTCACCTGCATTATCCT-TGGATGCCTCTCCTACTCAATCTGAC 535
Query 490 CCGTCAATTTCCACTCATGACTCTCTCAAGAGCCACATTGTAGAACACATGGTCGAGAGC 549
|||||||||||||||||||||||| | | || |||| ||||||| ||||||||||||||
Sbjct 536 CCGTCAATTTCCACTCATGACTCTTTGACGAACCACGTTGTAGATTACATGGTCGAGAGC 595
Query 550 AGTACTGATGATGG--A--A--ATGATGATGATGAGATTGTTAACATTGATAGTGACTTG 603
| |||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 596 ACTACTGATGATGGAAATGATGATGATGATGATGAGATTGTTAACATTGATAGTGACTTG 655
Query 604 ATGGATCCACAGCTTTGTGCTTCCTTTGCTTGTGATATCTACGAGCATTTGCGTGCATCT 663
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 656 ATGGATCCACAGCTTTGTGCTTCTTTTGCTTGTGATATCTACGAGCATTTGCGTGTATCT 715
Query 664 GAGGTAAAGAAAAGACCGGCCCTAGATTACATGGAAAGAATTCAGTTAAACATCAATGCT 723
||||| || ||||||||||| ||||||||||||||||||| ||||| || ||||||||||
Sbjct 716 GAGGTGAACAAAAGACCGGCTCTAGATTACATGGAAAGAACTCAGTCAAGCATCAATGCT 775
Query 724 AGCATGCGTTCTATACTCATTGACTGGCTCGTGGAGGTTGCTGAAGAGTATAGGCTTTCG 783
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 776 AGCATGCGTTCTATACTGATTGACTGGCTTGTGGAGGTTGCTGAAGAGTATAGGCTTTCG 835
Query 784 CCCGAGACGTTGTATTTGGCAGTGAACTATGTAGATCGGTATCTTACGGGCAATGCAATT 843
||||||||||||||||||||||| ||||| || |||||||||||||| || ||||||||
Sbjct 836 CCCGAGACGTTGTATTTGGCAGTAAACTACGTTGATCGGTATCTTACAGGAAATGCAATC 895
Query 844 AACAAGCAAAATCTGCAGTTACTTGGTGTTGCCTGCATGATGATCGCAGCAAAATATGAA 903
|||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||
Sbjct 896 AACAAGCAAAATCTGCAGCTACTTGGTGTTACCTGCATGATGATAGCAGCAAAATATGAA 955
Query 904 GAAGTGTGTGTGCCCCAAGTGGAGGATTTCTGTTACATCACTGATAACACATACTTAAGA 963
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GAAGTGTGTGTGCCGCAAGTGGAGGATTTCTGTTACATCACTGATAACACATACTTAAGA 1015
Query 964 AACGAGCTTTTGGAGATGGAGTCTTCTGTTCTGAACTACTTGAAGTTCGAATTAACAACT 1023
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AATGAGCTTTTGGAGATGGAGTCTTCTGTTCTGAACTACTTGAAGTTCGAATTAACAACT 1075
Query 1024 CCGACAGCAAAATGTTTCTTGAGGCGCTTTCTTCGTGCTGCTCAAGGCAGAAAGGAGGTA 1083
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CCAACAGCAAAATGTTTCTTGAGGCGCTTTCTTCGTGCTGCTCAAGGCAGAAAGGAGGTA 1135
Query 1084 CCATCACTGCTGTCTGAATGTCTGGCCTGCTATCTCACTGAATTATCGCTGTTAGATTAC 1143
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1136 CCATCACTGCTGTCTGAGTGTCTGGCCTGCTATCTCACCGAATTATCGCTGTTAGATTAC 1195
Query 1144 GCTATGCTTCGATACGCTCCATCACTTGTTGCAGCCTCTGCAGTTTTCTTGGCACAATAC 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GCTATGCTTCGATACGCTCCATCACTTGTTGCAGCCTCTGCAGTTTTCTTGGCACAATAC 1255
Query 1204 A-TACTACACCCTTCAAGAAAACCATGGAACGCTACACTAGAGCATTACACATCGTACAG 1262
| | |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1256 ACT-CTACACCCTTCAAGAAAACCATGGAATGCTACGCTAGAGCATTACACATCGTACAG 1314
Query 1263 GGCTAAACATATGGAAGCATGCGTTAAGAATCTTCTTCAGCTGTGTAATGAGAAACCCTC 1322
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1315 GGCTAAACATATGGAAGCATGCGTTAAGAATCTTCTTCAGCTGTGTAATGAGAAACTCTC 1374
Query 1323 ATCTGATGTGGTTGCAATCAGAAAGAAGTACAGTCAACACAAATACAAGTTTGTAGCAAA 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1375 ATCTGATGTGGTTGCAATCAGAAAGAAGTACAGTCAACACAAATACAAGTTTGCAGCAAA 1434
Query 1383 GAAGCTTTGCCCCACATCACTACCGCAAGAGCTCTTCCTCTG 1424
||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1435 GAAGCTTTGTCCCACGTCACTACCGCAAGAGCTTTTCCTCTG 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70381164090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5