BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476914
Length=1568
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77490.1 | Symbols: TAPX | thylakoidal ascorbate peroxidase ... 2241 0.0
AT4G08390.1 | Symbols: SAPX | stromal ascorbate peroxidase | ch... 686 0.0
> AT1G77490.1 | Symbols: TAPX | thylakoidal ascorbate peroxidase
| chr1:29117542-29120215 FORWARD LENGTH=1596
Length=1596
Score = 2241 bits (1213), Expect = 0.0
Identities = 1476/1594 (93%), Gaps = 53/1594 (3%)
Strand=Plus/Plus
Query 1 TATCCAGTTATGAGTGGGTGACTCCAAATAGATCCAACTGGCAACGCATTATTGACACGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27 TATCCAGTTATGAGTGGGTGACTCCAAATAGATCCAACTGGCAACGCATTATTGACACGT 86
Query 61 GTCTTTTTTAATTCTC-TCTTCCGGCG-CTT-TCT----C---T--CCA-C---CGTGAC 104
||| |||| | ||||| |||||||||| || ||| | | ||| | ||||||
Sbjct 87 GTC-TTTTCATTTCTCTTCTTCCGGCGTTTTCTCTCCGCCGTTTCGCCACCGTACGTGAC 145
Query 105 AATGGCTGTTTCTCTCTCCGCCGCCTCTCACTTACTCTGTTCCTCCACCAGAGTCTCTCT 164
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 AATGTCTGTTTCTCTCTCCGCCGCCTCTCACTTACTCTGTTCCTCCACCAGAGTCTCTCT 205
Query 165 TTTCCCCGCCGTCACCTC--C-TCCTCGTCCCCTGTCGTTGctctttcttcctcttcatc 221
|| ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct 206 TTCCCCCGCCGTCACCTCTTCGTCCTCGTCCCCTGTCGTTGCTCTTTCTTCCTCTACATC 265
Query 222 gccacattctctgtcttctcttcgaagcgtcgcgtcttcttctctGTTTCCTTGCACCAC 281
|||||| ||||||| |||||||||| ||||||||||||||||| | || | |
Sbjct 266 GCCACA---------TTCTCTTGGAAGCGTCGCATCTTCTTCTCTGTTTCC-T-CA-CTC 313
Query 282 CTCCTTCGTTCTTCAGAGAAAACATCCGATCAATGGGACGAGCACGAGGATGGTTTCACC 341
||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 314 CTCCTTCGTGCTTCAGAAAAAACATCCGATCAATGGGACGAGCACGAGGATGATTTCACC 373
Query 342 AAAATGTGCGGCTTCTGATGCAGCTCAATTGAGAAGCGCTAAAGAAGATATCAAAGTTCT 401
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 374 AAAATGTGCCGCTTCTGATGCAGCTCAATTGATAAGCGCTAAAGAAGATATCAAAGTTCT 433
Query 402 TCTCCGGACTAAGTTTTGCCATCCCATTTTGGTTAGGTTGGGATGGCACGATGCTGGTAC 461
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 434 TCTCCGGACTAAGTTTTGCCATCCCATCTTGGTTAGATTGGGGTGGCACGATGCTGGTAC 493
Query 462 ATT-TAACAAGAGCATTGAGGAGTGGCCACAAAGAGGTGGAGCTAATGGAAGTCTTAGGT 520
|| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 494 -TTATAACAAGAATATTGAGGAGTGGCCACTGAGAGGTGGAGCTAATGGAAGTCTTAGGT 552
Query 521 TTGAGGCTGAGCTTAAGCATGCTGCAAATGCCGGTCTGCTTAATGCTTTAAAGCTCATTC 580
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 553 TTGAGGCTGAGCTTAAGCATGCTGCAAATGCTGGTCTGCTTAATGCTTTAAAGCTCATTC 612
Query 581 AGCCTATCAAAGACAAGTATCCTAACATCTCTTATGCGGACTTATTCCAGTTAGCTAGTG 640
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 AGCCTCTCAAAGACAAGTATCCTAACATCTCTTATGCGGACTTATTCCAGTTAGCTAGTG 672
Query 641 CCACTGCAGTAGAGGAGGCTGGTGGTCCTGAAATCCCGATGAAATATGGGAGAGTTGATG 700
|||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 673 CCACAGCAATAGAGGAGGCTGGTGGTCCTGATATCCCGATGAAATATGGGAGAGTTGATG 732
Query 701 TCGTAGCACCTGAACAGTGTCCAGAAGAAGGAAGACTCCCTGATGCTGGACCTCCCTCAC 760
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 733 TTGTAGCACCTGAACAGTGTCCAGAAGAAGGAAGACTCCCTGATGCTGGACCTCCTTCAC 792
Query 761 CAGCTGATCATTTGAGAGATGTATTT-TACAGAATGGGACTAGATGACAAGGAAATAGTT 819
|||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 793 CAGCTGATCATTTGAGAGATGT-TTTCTACAGAATGGGACTTGATGACAAGGAAATAGTT 851
Query 820 GCCTTGTCTGGTGCACATACCTTAGGAAGAGCCAGGCCAGACCGTAGCGGTTGGGGAAAA 879
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 852 GCCTTGTCTGGTGCACATACCTTAGGGAGAGCCAGACCAGACCGTAGTGGTTGGGGAAAA 911
Query 880 CCTGAGACAAAGTACACGAAAACTGGACCAGGAGAAGCAGGAGGACAGTCATGGACAGTG 939
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 912 CCTGAGACAAAGTACACGAAAACTGGACCTGGAGAAGCAGGAGGACAGTCATGGACAGTG 971
Query 940 AAATGGCTTAAGTTTGACAATTCTTACTTCAAGGATATCAAAGAAAAGAGGGACGAAGAT 999
|||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 972 AAATGGCTCAAGTTCGACAACTCTTATTTCAAGGATATCAAAGAAAAGAGGGACGACGAT 1031
Query 1000 CTTCTGGTGTTACCCACTGATGCTGCACTATTCGAAGATCCTTCATTCAAGAACTATGCG 1059
||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1032 CTTCTGGTGTTACCCACTGATGCGGCGCTATTTGAAGATCCTTCATTCAAGAACTATGCA 1091
Query 1060 GAGAAGTATGCTGAAGATCCGGCTGCATTTTTCAAGGATTACGCTGAAGCTCATGCCAAG 1119
|||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||
Sbjct 1092 GAGAAGTATGCTGAAGATGTGGCTGCATTTTTCAAGGACTACGCTGAAGCCCATGCCAAG 1151
Query 1120 CTCAGCAATCTCGGCGCGAAATTTGATCCTCCCGAGGGCATCA-TCATTGACAACGCTCC 1178
|| ||||||||||| || ||||||||||||||||||||||| | ||||||| |||| |||
Sbjct 1152 CTTAGCAATCTCGGTGCAAAATTTGATCCTCCCGAGGGCAT-AGTCATTGAAAACGTTCC 1210
Query 1179 AGAGAAGTTTGTAGCTGCGAAGTATTCCACGGGAAAGAAGGAGCTTTCGGATTCGATGAA 1238
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1211 AGAGAAGTTCGTAGCTGCAAAGTATTCTACGGGAAAGAAGGAGCTTTCGGATTCGATGAA 1270
Query 1239 AAAGAAGATAAGAGCAGAGTATGAAGCAATTGGAGGAAGTCCAGATAAGCCATTACCGAC 1298
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1271 AAAGAAGATAAGAGCAGAGTATGAAGCAATTGGAGGAAGCCCAGATAAGCCATTACCCAC 1330
Query 1299 AAATTACTTCCTCAACATCATAATTGCCATTGGCGTTTTGGTCCTCTTGTCCACTCTCTT 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 AAATTACTTCCTCAACATCATAATTGCCATTGGCGTTTTGGTCCTCTTGTCCACTCTCTT 1390
Query 1359 TGGTGGTAATAACAACTCCGATTTCTCTGGTTTCTGATTGACAAATTAGAAAAATTGTAT 1418
||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 1391 TGGTGGTAATAACAACTCCGATTTCTCTGGTTTCTAATTGACAAATTA------T---AT 1441
Query 1419 ATTTTGATTTCTCTTACGTATATACATAATCACGTGGTGATCAAATAT-CTTTGCAAACA 1477
||||||||||||||||| || ||||||||| |||||||||||| |||| | |||||||||
Sbjct 1442 ATTTTGATTTCTCTTACCTACATACATAATTACGTGGTGATCATATATTCCTTGCAAACA 1501
Query 1478 AACACATCATTGTTATAGTTTGCTTGAATAAAATCACCTT-TAA-TAACATTGTTTATTT 1535
|| |||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1502 AAAACATCATTGTTAAAGTTTGCTTGAATAAAATCACCTTATAAATAACATTGTTTATTT 1561
Query 1536 GGTGGTTTTAGA-TTTTGGGATTAGTGTGAGTTT 1568
||| ||||||| ||||| |||||||||||||||
Sbjct 1562 GGT--TTTTAGAATTTTGAGATTAGTGTGAGTTT 1593
> AT4G08390.1 | Symbols: SAPX | stromal ascorbate peroxidase |
chr4:5314905-5317456 FORWARD LENGTH=1516
Length=1516
Score = 686 bits (371), Expect = 0.0
Identities = 677/823 (82%), Gaps = 28/823 (3%)
Strand=Plus/Plus
Query 353 CTTCTGATGCAGCTCAATTG-AGAAGCGCTAAAGAAGATATCAAAGTTCTTCTCCGGACT 411
|||| ||| | | ||| ||| |||| ||||| |||||||||||||| |||||| | ||
Sbjct 396 CTTCAGATCCTGATCAGTTGAAGAA-CGCTAGAGAAGATATCAAAGAGCTTCTCAGCACC 454
Query 412 AAGTTTTGCCATCCCATTTTGGTTAGGTTGGGATGGCACGATGCTGGTACATTTAACAAG 471
|| || |||||||| ||||||||||| || || ||||| ||||||||||| | |||||||
Sbjct 455 AAATTCTGCCATCCGATTTTGGTTAGATTAGGTTGGCATGATGCTGGTACGTATAACAAG 514
Query 472 AGCATTGAGGAGTGGCCACAAAGAGGTGGAGCTAATGGAAGTCTT-AGGTTTGAGGCTGA 530
| |||| |||| |||||||||||||||||||||||||||||| || || || || |||
Sbjct 515 AACATTAAGGAATGGCCACAAAGAGGTGGAGCTAATGGAAGT-TTGAGATTCGATATTGA 573
Query 531 GCTTAAGCATGCTGCAAATGCCGGTCT-GCTTAATGCTTTAAAGCTC-ATTCAGCCTATC 588
|||||| |||||||| || || ||||| | | ||||||||||| || ||| || ||||
Sbjct 574 GCTTAAACATGCTGCTAACGCTGGTCTTG-TGAATGCTTTAAA-CTTGATTAAGGATATC 631
Query 589 AAAGACAAGTA-TCCTAACATCTCTTATGCGGACTTATTCCAGTTAGCTAGTGCCACTGC 647
||||| || || || | ||| |||||| || || ||||||||||||||||| |||||
Sbjct 632 AAAGAGAAATACTC-TGGGATCAGTTATGCTGATTTGTTCCAGTTAGCTAGTGCTACTGC 690
Query 648 -AGTAGAGGAGGCTGGTGGTCCTGAAA-TCCCGATGAAATATGGGAGAGTTGATG--TCG 703
| ||||||| ||||| || || |||| | |||||||||||||| |||||||||| ||
Sbjct 691 TA-TAGAGGAAGCTGGAGGACC-GAAAATACCGATGAAATATGGTAGAGTTGATGCCTC- 747
Query 704 TAGCACCTGAACAGTGTCCAGAAGAAGGAAGACTCCCTGATGCTGGACCTCCCTCACCAG 763
| | ||||| | ||||||||||||||||| || || |||||||| ||||| ||||| |
Sbjct 748 TGGT-CCTGAGGATTGTCCAGAAGAAGGAAGGCTTCCAGATGCTGGTCCTCCTTCACCTG 806
Query 764 CTGA-TCATTTGAGAGATGTATTTTACAGAATGGGACTAGATGACAAGGAAATAGTTGCC 822
|| | |||| | ||||| || ||||||||||||||| ||||||||||||| ||||||||
Sbjct 807 CT-ACTCATCTCAGAGAAGTTTTTTACAGAATGGGATTAGATGACAAGGACATAGTTGCA 865
Query 823 TTGTCTGGTGCACATACCTTAGGAAGAGCCAGGCCAGACCGTAGCGGTTGGGGAAAACCT 882
|| |||||||| || || ||||||||| | |||||||| ||||| |||||||| || |||
Sbjct 866 TTATCTGGTGCTCACACGTTAGGAAGATCTAGGCCAGAACGTAGTGGTTGGGGGAAGCCT 925
Query 883 GAGACAAAGTACACGAAA-ACTGGACCAGGAGAAGCAGGAGGACAGTCATGGACAGT-GA 940
||||| |||||||||||| | ||||| |||| | |||||||||||||||||||| ||
Sbjct 926 GAGACGAAGTACACGAAAGAA-GGACCTGGAGCACCAGGAGGACAGTCATGGACACCAGA 984
Query 941 AATGGCTTAAGTTTGACAATTCTTACTTCAAGGATATCAAAGAAAAGAGGGACGAAGATC 1000
||||| |||||||| ||||||||||||||||| ||||| |||||||| || |||||||
Sbjct 985 G-TGGCTGAAGTTTGATAATTCTTACTTCAAGGAGATCAAGGAAAAGAGAGATGAAGATC 1043
Query 1001 TTCTGGTGTTACCCACTGATGCTGC-ACTATTCGAAGATCCTTCATTCAAGAACTATGCG 1059
| || || |||||||||||||||| | | ||||||||| |||| |||||| ||||||
Sbjct 1044 TCCTTGTCCTACCCACTGATGCTGCCA-TCTTCGAAGATTCTTCTTTCAAGGTCTATGCT 1102
Query 1060 GAGAAGTATGCTGAAGATCCGGCTGCATTTTTCAAGGATTACGCTGAAGCTCATGCCAAG 1119
|| |||||||||| ||||| || ||||||||||||||||||||||| ||| ||||| |||
Sbjct 1103 GAAAAGTATGCTGCAGATCAGGATGCATTTTTCAAGGATTACGCTGTAGCCCATGCGAAG 1162
Query 1120 CTCAGCAATCTCGGCGC-GAAATTTGATCCTCCCGAGGGCATC 1161
||||||||||| || || ||| ||| | ||||| ||||| |||
Sbjct 1163 CTCAGCAATCTTGGAGCAGAA-TTTAACCCTCCGGAGGGTATC 1204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77409240390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5