BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476957

Length=1134
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G77930.1 | Symbols:  | Chaperone DnaJ-domain superfamily pro...  1495    0.0  


> AT1G77930.1 | Symbols:  | Chaperone DnaJ-domain superfamily protein 
| chr1:29301000-29302639 FORWARD LENGTH=1172
Length=1172

 Score = 1495 bits (809),  Expect = 0.0
 Identities = 996/1081 (92%), Gaps = 33/1081 (3%)
 Strand=Plus/Plus

Query  72    AAGA-GTGGAATTTGATTTATATGAATTTTGATTTCTGGGTTTGCGAAATTGATCGGTTT  130
             |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  105   AAGAGGTGGAATTTGATTTATATGAATTTTGATTTCTGGGTTTACGAAATTGATCGGTTT  164

Query  131   CTGGGTCGGAGCTTGAAGTTATGAGCAATCTTCGAGCTATTTGTAGACCACACACTGTTT  190
             |||||| ||| ||||||||||||||||||||||||||||| ||||||||| || |||| |
Sbjct  165   CTGGGTTGGAACTTGAAGTTATGAGCAATCTTCGAGCTATCTGTAGACCATACTCTGTGT  224

Query  191   TCTCTTCGGTCGTGTGTTGTAGTAGACACCAAAGTCGATCACTTTTTAGGGTTTCGATTA  250
             |||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  225   TCTCTTCGATTGTGTGTTGTAGTAGACATCAAAGTCGATCACTTTTTAGGGTTTCGATTA  284

Query  251   AAAACCTCGCCTTTAGAAACC-GAGTATCGAATTCGTCTTGGTTTAGGTCTAAAGAAGAT  309
             ||||| ||||||||||||||| |||| |||||||||||||||||||||||| || || ||
Sbjct  285   AAAACGTCGCCTTTAGAAACCAGAGT-TCGAATTCGTCTTGGTTTAGGTCT-AA-AA-AT  340

Query  310   TCGAATCTTTGGTTTCGTTTGAATCAGAGGAAGACTCTAGTTAGAGCATCGAATTGGAGC  369
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  341   TCGAATCTTTGGTTTCGTTTGAATCAGAGGAAGACTCTAGTTAGAGCATCGAATTGGAGC  400

Query  370   GAAGAGAAATCTCCGTACGAGACTCTTGAGTTGGATCGAGATGCAGAGGAAGAGCAGATT  429
              ||||||||||||| ||||| ||||| ||||||||| || ||||||||||||| ||||||
Sbjct  401   CAAGAGAAATCTCCTTACGATACTCTCGAGTTGGATAGAAATGCAGAGGAAGAACAGATT  460

Query  430   AAGGTAGCATACAGAAGATTAGCCAAATTCTATCATCCTGATGTTTATGATGGAAAGGGG  489
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  461   AAGGTAGCATACAGAAGATTAGCCAAATTCTATCATCCTGATGTTTATGATGGAAAGGGG  520

Query  490   ACTCTTGAAGAAGGAGAGACAGCAGAAGCAAGATTCATCAAGATTCAGGCGGCATACGAG  549
             |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct  521   ACTCTTGAAGAAGGAGAGACAGCAGAAGCAAGATTCATTAAGATTCAGGCTGCATACGAG  580

Query  550   CTGCTCATGGACTCAGAAAAGAAAAG-ACAATATGATATGGATAACCGAGTGAATCCGAT  608
             |||||||||||||| ||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct  581   CTGCTCATGGACTCGGAAAAGAAA-GTACAATATGATATGGATAACCGAGTTAATCCGAT  639

Query  609   GAAGGCATCTCAAGCTTGGATGGAATGGTTGATGAAAAAGCGAAAAGCGTTTGATCAGAG  668
             |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct  640   GAAGGCATCTCAAGCTTGGATGGAATGGTTGATGAAAAAGCGTAAAGCTTTTGATCAAAG  699

Query  669   AGGCGACATGGCTATTGCAGCTTGGGCTGAGCAACAACAGCTTGAGATAAACCTTCGTGC  728
              |||||||||||  |||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct  700   GGGCGACATGGCGGTTGCCGCTTGGGCTGAGCAACAACAGCTTGATATAAACCTGCGTGC  759

Query  729   TCGTCGCCTTTCACGTTCTAAGGTGGATCCGGAAGAAGAAAGGAAGATATTGGAGAAGGA  788
             |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  760   TCGTCGTCTTTCTCGTTCTAAAGTGGATCCGGAAGAAGAAAGGAAGATATTGGAGAAGGA  819

Query  789   GAAGAAAGCATCAAGAGAGTTATTTAACAGCACTTTAAAGAGACACACACTAGTGTTGAA  848
             |||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||
Sbjct  820   GAAGAAAGCATCGAGAGAGTTATTCAACAGCACTTTAAAGCGACACACGCTAGTGTTGAA  879

Query  849   GAAAAGAGATCTAATGCGAAAGAAAGCAGAGGAAGATAAGAAAAAGCTCATCACTCAGCT  908
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  880   GAAAAGAGATCTGATGCGAAAGAAAGCAGAGGAAGATAAGAAAAAGCTCATCACTCAGCT  939

Query  909   ATTAGCAGCAGAAGGTCTCGAGCTTGATTCTGAAGAAGAAGAGGAAGAAGCAGCCAAGTA  968
             |||||||||||||||||||||||||||| | |||| |||||||||||||||||| |||||
Sbjct  940   ATTAGCAGCAGAAGGTCTCGAGCTTGATACCGAAGCAGAAGAGGAAGAAGCAGCAAAGTA  999

Query  969   AGAGCCCAAACGTTTTGGAAGCGTCATCTTCGATATCTACTTCAAGTAATTAAGCACTTG  1028
             |||  |||||| |||||||||| |  |||   ||| ||||||||||||||||||||| ||
Sbjct  1000  AGATTCCAAACATTTTGGAAGC-T--TCT---ATAGCTACTTCAAGTAATTAAGCACATG  1053

Query  1029  GTACTTACTCCctctctctctctttctctTGTAGTATAAACATACATGTA-A-A-T-AT-  1083
             |||||| |||||||||| |||||  || | |||||||||||||||||||| | | | || 
Sbjct  1054  GTACTTGCTCCCTCTCTGTCTCT--CT-T-GTAGTATAAACATACATGTAGATAATCATA  1109

Query  1084  T---AC------CA-GATCTTCACTTCACGGTTCATCATTAAAAATAAGACAAGTACCAA  1133
             |   ||      || |||||||||| |||||||||| |||||||||||||||||||||||
Sbjct  1110  TTTGACAATTTACAAGATCTTCACTGCACGGTTCATTATTAAAAATAAGACAAGTACCAA  1169

Query  1134  T  1134
             |
Sbjct  1170  T  1170



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 55622203860


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5