BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476957 Length=1134 Score E Sequences producing significant alignments: (Bits) Value AT1G77930.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1495 0.0 > AT1G77930.1 | Symbols: | Chaperone DnaJ-domain superfamily protein | chr1:29301000-29302639 FORWARD LENGTH=1172 Length=1172 Score = 1495 bits (809), Expect = 0.0 Identities = 996/1081 (92%), Gaps = 33/1081 (3%) Strand=Plus/Plus Query 72 AAGA-GTGGAATTTGATTTATATGAATTTTGATTTCTGGGTTTGCGAAATTGATCGGTTT 130 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 105 AAGAGGTGGAATTTGATTTATATGAATTTTGATTTCTGGGTTTACGAAATTGATCGGTTT 164 Query 131 CTGGGTCGGAGCTTGAAGTTATGAGCAATCTTCGAGCTATTTGTAGACCACACACTGTTT 190 |||||| ||| ||||||||||||||||||||||||||||| ||||||||| || |||| | Sbjct 165 CTGGGTTGGAACTTGAAGTTATGAGCAATCTTCGAGCTATCTGTAGACCATACTCTGTGT 224 Query 191 TCTCTTCGGTCGTGTGTTGTAGTAGACACCAAAGTCGATCACTTTTTAGGGTTTCGATTA 250 |||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 225 TCTCTTCGATTGTGTGTTGTAGTAGACATCAAAGTCGATCACTTTTTAGGGTTTCGATTA 284 Query 251 AAAACCTCGCCTTTAGAAACC-GAGTATCGAATTCGTCTTGGTTTAGGTCTAAAGAAGAT 309 ||||| ||||||||||||||| |||| |||||||||||||||||||||||| || || || Sbjct 285 AAAACGTCGCCTTTAGAAACCAGAGT-TCGAATTCGTCTTGGTTTAGGTCT-AA-AA-AT 340 Query 310 TCGAATCTTTGGTTTCGTTTGAATCAGAGGAAGACTCTAGTTAGAGCATCGAATTGGAGC 369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 341 TCGAATCTTTGGTTTCGTTTGAATCAGAGGAAGACTCTAGTTAGAGCATCGAATTGGAGC 400 Query 370 GAAGAGAAATCTCCGTACGAGACTCTTGAGTTGGATCGAGATGCAGAGGAAGAGCAGATT 429 ||||||||||||| ||||| ||||| ||||||||| || ||||||||||||| |||||| Sbjct 401 CAAGAGAAATCTCCTTACGATACTCTCGAGTTGGATAGAAATGCAGAGGAAGAACAGATT 460 Query 430 AAGGTAGCATACAGAAGATTAGCCAAATTCTATCATCCTGATGTTTATGATGGAAAGGGG 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 461 AAGGTAGCATACAGAAGATTAGCCAAATTCTATCATCCTGATGTTTATGATGGAAAGGGG 520 Query 490 ACTCTTGAAGAAGGAGAGACAGCAGAAGCAAGATTCATCAAGATTCAGGCGGCATACGAG 549 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 521 ACTCTTGAAGAAGGAGAGACAGCAGAAGCAAGATTCATTAAGATTCAGGCTGCATACGAG 580 Query 550 CTGCTCATGGACTCAGAAAAGAAAAG-ACAATATGATATGGATAACCGAGTGAATCCGAT 608 |||||||||||||| ||||||||| | |||||||||||||||||||||||| |||||||| Sbjct 581 CTGCTCATGGACTCGGAAAAGAAA-GTACAATATGATATGGATAACCGAGTTAATCCGAT 639 Query 609 GAAGGCATCTCAAGCTTGGATGGAATGGTTGATGAAAAAGCGAAAAGCGTTTGATCAGAG 668 |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || Sbjct 640 GAAGGCATCTCAAGCTTGGATGGAATGGTTGATGAAAAAGCGTAAAGCTTTTGATCAAAG 699 Query 669 AGGCGACATGGCTATTGCAGCTTGGGCTGAGCAACAACAGCTTGAGATAAACCTTCGTGC 728 ||||||||||| |||| |||||||||||||||||||||||||| |||||||| ||||| Sbjct 700 GGGCGACATGGCGGTTGCCGCTTGGGCTGAGCAACAACAGCTTGATATAAACCTGCGTGC 759 Query 729 TCGTCGCCTTTCACGTTCTAAGGTGGATCCGGAAGAAGAAAGGAAGATATTGGAGAAGGA 788 |||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 760 TCGTCGTCTTTCTCGTTCTAAAGTGGATCCGGAAGAAGAAAGGAAGATATTGGAGAAGGA 819 Query 789 GAAGAAAGCATCAAGAGAGTTATTTAACAGCACTTTAAAGAGACACACACTAGTGTTGAA 848 |||||||||||| ||||||||||| ||||||||||||||| ||||||| ||||||||||| Sbjct 820 GAAGAAAGCATCGAGAGAGTTATTCAACAGCACTTTAAAGCGACACACGCTAGTGTTGAA 879 Query 849 GAAAAGAGATCTAATGCGAAAGAAAGCAGAGGAAGATAAGAAAAAGCTCATCACTCAGCT 908 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 880 GAAAAGAGATCTGATGCGAAAGAAAGCAGAGGAAGATAAGAAAAAGCTCATCACTCAGCT 939 Query 909 ATTAGCAGCAGAAGGTCTCGAGCTTGATTCTGAAGAAGAAGAGGAAGAAGCAGCCAAGTA 968 |||||||||||||||||||||||||||| | |||| |||||||||||||||||| ||||| Sbjct 940 ATTAGCAGCAGAAGGTCTCGAGCTTGATACCGAAGCAGAAGAGGAAGAAGCAGCAAAGTA 999 Query 969 AGAGCCCAAACGTTTTGGAAGCGTCATCTTCGATATCTACTTCAAGTAATTAAGCACTTG 1028 ||| |||||| |||||||||| | ||| ||| ||||||||||||||||||||| || Sbjct 1000 AGATTCCAAACATTTTGGAAGC-T--TCT---ATAGCTACTTCAAGTAATTAAGCACATG 1053 Query 1029 GTACTTACTCCctctctctctctttctctTGTAGTATAAACATACATGTA-A-A-T-AT- 1083 |||||| |||||||||| ||||| || | |||||||||||||||||||| | | | || Sbjct 1054 GTACTTGCTCCCTCTCTGTCTCT--CT-T-GTAGTATAAACATACATGTAGATAATCATA 1109 Query 1084 T---AC------CA-GATCTTCACTTCACGGTTCATCATTAAAAATAAGACAAGTACCAA 1133 | || || |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 1110 TTTGACAATTTACAAGATCTTCACTGCACGGTTCATTATTAAAAATAAGACAAGTACCAA 1169 Query 1134 T 1134 | Sbjct 1170 T 1170 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55622203860 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5