BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476963
Length=871
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78040.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 1186 0.0
> AT1G78040.1 | Symbols: | Pollen Ole e 1 allergen and extensin
family protein | chr1:29345838-29347107 FORWARD LENGTH=938
Length=938
Score = 1186 bits (642), Expect = 0.0
Identities = 812/889 (91%), Gaps = 32/889 (4%)
Strand=Plus/Plus
Query 1 AACGGTGTGGGCTAATCTCACGCGCTTTCATCATCTTCTTCCTTCCTAGATTCGCTCCTC 60
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1 AACGGTGTGGGCTAATCTCACGCGCTTTCATCA---TCTT-CTTCCTAGATTCGCTCCTC 56
Query 61 CACTGTCTTAAATTTCACTA---TCTTCTTCA-TTTCCTTCCTTCTCACTTCAAATCCAT 116
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 57 CACTGTCTTAAATTTCACTATCTTCTTCTTCATTTTCCTTCCTTCTCACTTCAAATCCAT 116
Query 117 AAT--CTC-GC--AACT-TCTCTCTCTAGATCCG-AAAAATGGCGAAACTGGTGATGTTG 169
||| ||| | || ||||||||||||| || |||||||||||||||||||||||||
Sbjct 117 AATCGCTCTACTTCTCTCTCTCTCTCTAGATTCGAAAAAATGGCGAAACTGGTGATGTTG 176
Query 170 TTGGTTCTCTGTATCTTGCCGGCGATAGCCATGGCCGC---GAGGGGAAATATTGGAAAG 226
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 177 TTGGTTCTCTGTATCTTACCGGCGATAGCCATGGCGGCAAGGAGGGGAAATATTGGAAAG 236
Query 227 AATACAATGGTGGTTCAAGGTCGCACTTACTGTGACCTTTGCAAATTCGGCTTCGAGACT 286
||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||
Sbjct 237 AATACAATGGTGGTTCAAGGTAGCACCTACTGTGACATTTGCAAATTCGGCTTCGAGACT 296
Query 287 CCTGAGTCATCCTACTTCATCCCCGGTGCAACGGTGAAGCTTTCATGCAGAGACAGGAAG 346
||||| || |||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 297 CCTGAATCCTCCTACTTCATCCCCGGTGCAACGGTGAAGCTATCATGCAAAGACAGGAAG 356
Query 347 ACAATGGAGGAGGTTTACACTGACGAAGCTGTATCAGACAAACAAGGAAATTACAAGTTC 406
|||||||| ||||||||||| ||| ||||||||||||||||| ||||||| || ||||||
Sbjct 357 ACAATGGAAGAGGTTTACACAGACAAAGCTGTATCAGACAAAGAAGGAAAGTATAAGTTC 416
Query 407 ATTGTCCACGACGAGCACAAAGACGAGATGTGCGATGTTTTGCTAGTGAAAAGCGCAG-T 465
|||||||||||||| |||| |||| ||||||||||||||||||| ||||||||| | | |
Sbjct 417 ATTGTCCACGACGATCACAGAGACCAGATGTGCGATGTTTTGCTTGTGAAAAGCTCGGAT 476
Query 466 CAAGGGATGCTCTAAAATCTCCGTTGGACGTGAGAAGTCTCGTGTGATCTTGAACCATTA 525
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 -AAAACCTGCTCTAAAATCTCCGTTGGACGTGAGAAGTCTCGTGTGATCTTGAACCATTA 535
Query 526 CAGTGGCATTGCCTCGCAGATCAGGCACGCTAACAACATGGGATTCGAGAAAGAAGTGAG 585
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 536 CAGTGGCATTGCCTCGCAGATCAGACATGCTAACAACATGGGATTTGAGAAAGAAGTGAG 595
Query 586 CGATGTGTTCTGCTCTGCTCTGTTTCACAAGTATATGGTTGATGAAGATGAGGATGATAT 645
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 596 TGATGTGTTCTGCTCTGCTTTGTTTCAGAAGTATATGGTTGATGAAGATGAGGATGATAT 655
Query 646 TAAAAACCATCTCTAATCTCTCTGTTTTTAATCTTATGGTATGCTGTTCTTTTTTCATTA 705
||||||||||||||||||||||||||| ||||||||| | ||||||| || || |||||
Sbjct 656 TAAAAACCATCTCTAATCTCTCTGTTT--AATCTTATGATCTGCTGTT-TTCTT-CATTA 711
Query 706 ATGAGTTTCGGGTTATGGAAGGAGATATATTTGTATTTGTTTGATTACTTATTTGTCT-T 764
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||| | |
Sbjct 712 ATGAGTTTCGAGTTATGGAAG-AGATATATTTGTATTTGTTTGATTACTTATTTGT-TGT 769
Query 765 AGCT-GATGGATGATGACTCTGGTGATCAGA-AACTCATCTGTTTGTGTAAGCTTCTTAT 822
| || | ||| |||||||||||||| || |||| |||||||||||||||||||||||
Sbjct 770 CTTTAGA-G-ATGTTGACTCTGGTGATCGGATAACT-ATCTGTTTGTGTAAGCTTCTTAT 826
Query 823 ATATTGATGTGTCATTTCCTTGCTTAGGAAGTGTCTTTTATTAAAACTA 871
||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 827 ATATTGATGTGTCATTTCCTTGCTTAGGAAGTGTCTTTTATTAAAGCTA 875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42498088362
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5