BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476977 Length=1273 Score E Sequences producing significant alignments: (Bits) Value AT1G78100.1 | Symbols: | F-box family protein | chr1:29387795-... 1657 0.0 > AT1G78100.1 | Symbols: | F-box family protein | chr1:29387795-29389112 FORWARD LENGTH=1318 Length=1318 Score = 1657 bits (897), Expect = 0.0 Identities = 1039/1107 (94%), Gaps = 12/1107 (1%) Strand=Plus/Plus Query 23 AACACAAAGTGAG--AGAACTCTCTAAACAGTCCCGAAGGTTTCAAAAGGGTATTTTAGT 80 ||||||||||||| |||||||||||| |||||||||||||||||||||||||||| || Sbjct 36 AACACAAAGTGAGACAGAACTCTCTAATTAGTCCCGAAGGTTTCAAAAGGGTATTTTGGT 95 Query 81 AAAACCATAGAAAAAGAGAATCATGGACGCTTTTGATGCGATTCCAGATCCTGTGGTCAT 140 ||| || | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 96 -AAA--ATCG--AAAGAGAATCATGGACGCTTTTGATGCGATTCCAGATCCTGTGGTCAT 150 Query 141 CGACATTTTGAACAAAGTCGGTGACGTCAAAACGTTAATACGATGCCGTTCCGTTTCCAA 200 |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| || Sbjct 151 CGACATTTTGAACAGAGTCGGTGACGTCAAAACGTTAATACGATGTCGTTCCGTTTCTAA 210 Query 201 ACGATTCAACTCGTTAGCCACTCAGTCCGACTCACTCCTTCTTCAACTCGATCAGATCCT 260 ||||||||||||||||||||||||||| || || |||||||| ||||||||||||||||| Sbjct 211 ACGATTCAACTCGTTAGCCACTCAGTCTGAGTCGCTCCTTCTCCAACTCGATCAGATCCT 270 Query 261 CGGAGCCACCGAATCTGACTCCGAGATCGATTCTCCGATCGCTAGCTTCTTCCGATCTCT 320 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 271 CGGAGCCACCGAATCTGACTCCGAGATCGATTCTCCTATCGCTAGCTTCTTCCGATCTCT 330 Query 321 GTTCAAATCCATTTACGGTCTCCT-CC-C-TAGCTTCTCCAAACCAGCTAAAACTGACGA 377 |||||||||||| |||||||||| || | || |||||||||||||||||| ||||||| Sbjct 331 CTTCAAATCCATTCACGGTCTCCTTCCTCCTATCTTCTCCAAACCAGCTAACTCTGACGA 390 Query 378 AATCTTAACCCGATCCCCGAAAACTCCGGCTCAGATTCTCGCCGGATTTGAACGGATCCG 437 |||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 391 AATCCTAACCCGATCTCCGAAAACTCCGGCTCAGATTCTCTCCGGATTTGAACGGATCCG 450 Query 438 GAATCTGGAGGTGGAGTTATACGGCGGAGATGTCAAGCTCGAGAAAGGCGCCGCCGTTAA 497 ||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||| Sbjct 451 GAATCTGGAGGTGGAATTATACGGTGGTGATGTCAAGCTTGAGAAAGGCGCCGCCGTTAA 510 Query 498 GTGGAAGGCTGAGTTCGGAAAAACTCTCAAGAGCTGCGTCATCGTTGCTTTCCGTTCCGC 557 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 511 GTGGAAGGCTGAGTTCGGGAAAACTCTCAAGAGCTGCGTCATCGTCGCTTTCCGTTCCGC 570 Query 558 GACGGTTAATACTTCAGCAGCTACGGAATCTGCCGCCGTCGTTGACGGTGGCGTGGAGTC 617 |||||||||||||||||||||||||||| ||||||||||||| ||||||| || ||||| Sbjct 571 GACGGTTAATACTTCAGCAGCTACGGAAGCTGCCGCCGTCGTCGACGGTGTTGTTGAGTC 630 Query 618 TGATTCGGAGTTCGTTTGTGGATTGAAGACGCGCGTGGTGTGGACGATCAGCGCGTTGAT 677 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 631 AGATTCGGAGTTTGTTTGTGGATTGAAGACGCGCGTGGTGTGGACGATCAGCGCGTTGAT 690 Query 678 GGCGGCTTCGACGCGTCATTACTTGATGAGAGATTTGGTGAAAGATCACAAGGAGATGGA 737 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 691 GGCGGCTTCCACGCGTCATTACTTGATGAGAGATTTGGTGAAAGATCACAAGGAGATGGA 750 Query 738 GAAATTGATTGTGCGTGACAGAGAAGGAGAAGGTACGGTGGTGATGGACGCGGCGGGGAT 797 ||||||||||||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 751 GAAATTGATTGTGCGTGACAGTGATGGTGAAGGTACGGTGGTGATGGACGCGGCGGGGAT 810 Query 798 GAAAGAATACAGAGAGACGGAGGCGCGTGGAGATGATAAA-ACATTAGAGCGCGTGGGTG 856 ||||||||||||||||||||||| |||||| ||| ||||| | || |||||||||||| | Sbjct 811 GAAAGAATACAGAGAGACGGAGGTGCGTGGGGATAATAAAGA-ATCAGAGCGCGTGGGGG 869 Query 857 AACGCACGGTGGTTCCTAGCGTCAGGATGAGTATGAGACACGCGCCGTCGCTGATGCTGA 916 |||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 870 AACGAACTGTGGTACCTAGCGTGAGGATGAGTATGAGACACGCGCCGTCGCTGATGCTGA 929 Query 917 AGAGCGGGATTTGTCTTGAAGCCGCGACGCTGGTTGTCGTAAGGCCGACTGGTGTGGCTT 976 |||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 930 AGAGCGGGATTTGTCTCGAAGCAGCGACGCTGGTGGTCGTAAGGCCGACTGGTGTGGCTT 989 Query 977 CCGATGATAACGATGTTGAGCTGGTGACTGAGGCGTTTGCCGGAGATGGCGGTGATTGTA 1036 |||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||| Sbjct 990 CCGATGATAACGATGTTGAGCTGGTGACGGAGGCGTTCGCCGGAGATGGCGACGATTGTA 1049 Query 1037 TGTACGGAGAAGCCGTTACGGCGTTGCTCAAGCGTAGGAGAAATGTGTTAGAGATGAATT 1096 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1050 TGTACGGAGAAGCTGTTACGGCGTTGCTTAAGCGTAGGAGAAATGTGTTAGAGATGAATT 1109 Query 1097 CTTTCTAAGGCCTAATGGGCttttttt 1123 |||||||||||||| |||||||||||| Sbjct 1110 CTTTCTAAGGCCTAGTGGGCTTTTTTT 1136 Score = 244 bits (132), Expect = 1e-63 Identities = 144/150 (96%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 1124 TATATACATACGCATCGTACAAAGCCGACCGTACTATTGGCGTACGACTTTTGGGTCAAA 1183 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1167 TATATACATACGCATCGTACAAAGCCAACTGTACTATTGGCGTACGACTTTTGGGTCAAA 1226 Query 1184 TGACATCGAATCCGAATTATTCCTCTAATATCATATGATTACCACATTAAATGCGTTGCA 1243 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1227 TGACATCAAATCCGAATTATTCCTCTAATATCATATGATTACCACATTAAATGCGTTGCA 1286 Query 1244 GCAGCTAATATAATATATAGATATGATTCG 1273 ||| ||||||| ||| |||||||||||||| Sbjct 1287 GCATCTAATATTATACATAGATATGATTCG 1316 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62600079615 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5