BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476991 Length=2114 Score E Sequences producing significant alignments: (Bits) Value AT1G78230.1 | Symbols: | Outer arm dynein light chain 1 protei... 2820 0.0 > AT1G78230.1 | Symbols: | Outer arm dynein light chain 1 protein | chr1:29430225-29432764 FORWARD LENGTH=2295 Length=2295 Score = 2820 bits (1527), Expect = 0.0 Identities = 1833/1978 (93%), Gaps = 32/1978 (2%) Strand=Plus/Plus Query 100 AAAACAAGTAG-GGCAATCTTTAACTCTGGCCGACACATCAACGGATTCGGCGGTGGTCG 158 ||||||||| | ||| |||||||||||||||||||||||| |||||||| | ||||||| Sbjct 143 AAAACAAGT-GCGGCTATCTTTAACTCTGGCCGACACATCGGCGGATTCGACTGTGGTCG 201 Query 159 GATCAAGAAGTGCTTCCtttttttCCGGCGTCATTTCTTCTTTTAAATTCATCGATTTGG 218 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 202 GATCAAGAAGTGCTTCCTTTTTTTCCGGCGTCGTTTCTTCTTTTATATTCATCGATTTGG 261 Query 219 TGTTCTCGCAACTTCCAATAGATTACGGCTAATTTAAAAAATAAAATGAAGATATTACCA 278 || |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 262 TGCTCTCGCAACTTCCAATAGATTACGGCTAATTT-----CTAAAATGAAGATATTACCA 316 Query 279 TGCTTTGCTGGATTGATCCGTAGAAAGAAAAATAAGGGGAATTCAAAACCTCTGCCTCCG 338 ||| || |||||| ||||||||||||||||||||||||||||||||| |||| | Sbjct 317 TGC-TT--TGGATTTATCCGTAGAAAGAAAAATAAGGGGAATTCAAAA------CCTCAG 367 Query 339 AAAACGCAGAGAATACTTCAGATCAGACTTGAAGAGCCAGTGAAGCCTCTCGAGAATGAT 398 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 368 AAAACGCAGAGAATACTTCAGATCAGACTTGAAGAGCCAGTGAAGCCTTTGGAGAATGAT 427 Query 399 GAGCCTAACAACAAGGGCAGTCCTATCAAGCACGAGTCATATGACGGCGAAGATGAACGT 458 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 428 GAGCCTAACAACAAGGACAGTCCTATCAAGCACGAGTCATATGACGGCGAAGATGAACGT 487 Query 459 GGCGACAAGGACTCAACGAACCGTGAGTTTCCTGAATTCCAAGTTCACGAACGAGCCGTT 518 | ||| ||||| |||||||||||||||||| || ||||||| |||||||||||||||||| Sbjct 488 GACGATAAGGATTCAACGAACCGTGAGTTTTCTAAATTCCACGTTCACGAACGAGCCGTT 547 Query 519 GAATCTCTGAAAAGCAAGGAGGAAGTCACAGATACTTCTGTAAACGGCGATG---ATGAC 575 |||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 548 GAATCTGTGAAAAGCAAGGAGGAAGTCACAGATACTTCTGAAAACGGCGATGACAATGAC 607 Query 576 GATGACGAAGGAGGTCACGTCAGCGATCCCGGATTAGGCAGAGCCACGGCTTGGGTGACT 635 || || ||||||||||||||||| ||||| |||||||||| | | |||||||||||||| Sbjct 608 GAGGATGAAGGAGGTCACGTCAGTGATCCTGGATTAGGCAAAACTACGGCTTGGGTGACG 667 Query 636 TCTCCTAAGCTTAAACGATCTTGCTCCACTCTCAGCAAGTTCAATGGCCGGTTCCATGGT 695 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 668 TCTCCTAAGCTTAAACGATCTTGCTCCACTCTCAGCAAGTTTAATGGCCGGTTCCATGGT 727 Query 696 TCTGATCTCCATGACCTGAGAGAGACCGTTCCAGTTAGTAATGAATCAGTGAGGTCCCAT 755 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 728 TCTGATCTCCATGACCTGAAAGAGACCGTTCCAGTTAGTAATGAATCAGTGAGGTCTCAT 787 Query 756 AGAAGTGCAGATAGAGTGATGCTCAAGAAACACTCGTCGATGCAGATACTTCCCTC-GGG 814 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 788 AGAAGTGCAGATAGAGTGATGCTCAAGAAACATTCGTCGATGCAGATACTTCCCTCTGGG 847 Query 815 TAGCCGGCGGCTCTGGTGGAAACTGTTCCTCTGGAGCCATAGGAACCTTCACAAACACCG 874 |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 848 -AGCCGGCGGCTCTGGTGGAAGTTGTTCCTATGGAGCCATAGGAACCTTCACAAACACCG 906 Query 875 TGTTTCCCTAAAGTCACAGCCTTTAAACAAGAACCATCAGTCTGGATACACCTCTGACTT 934 ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 907 TGTCTCGCTAAAGTCACAGCCTTTAAACAAGAACCAGCAGTCTGGATACACCTCTGACTT 966 Query 935 TGCTGAGCACAACCAATCGAGCCATGAAGAAGAATCTACAAACAATTGCGCCGATTTCAC 994 |||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| Sbjct 967 TGCTGAGCACAACCAATCCAGCCATGAAGAAGAATCTACAAACTATTGCGCTGATTTCAC 1026 Query 995 CAACCAATCATCCAACTTGTGGCCTCGTCATAATCAGTGGGTAGCGTTCTCTGCCGAATC 1054 |||||| ||||| ||||||||||||| ||||||||||||||| |||||||||||||| || Sbjct 1027 CAACCAGTCATCAAACTTGTGGCCTCATCATAATCAGTGGGTCGCGTTCTCTGCCGAGTC 1086 Query 1055 ATCTTCAATGAAGCGAGTGGACGAGTGGGTAAGAGGACTCGATGTTGAAACCGCCGCAGT 1114 || ||||||||||||||||||||||||||||||||||| ||||| ||||||| | || Sbjct 1087 CTCGTCAATGAAGCGAGTGGACGAGTGGGTAAGAGGACTGGATGTCGAAACCG-TG--GT 1143 Query 1115 ACCCA-TAAACGAGGATAAAGACGTCTTGGCCAGCTTCCCAACCTCTCCCAATACAGAGA 1173 ||| | ||||||||||| || |||||||||| ||||||||||||||| ||||| |||| Sbjct 1144 -TCCAGTGAACGAGGATAAGGATGTCTTGGCCATCTTCCCAACCTCTCCTAATACTGAGA 1202 Query 1174 GATCACCCTTAGGAAATGTGATTCAGTCCGGAAATGTCTCAGAGGCTATAGTGCACGCAA 1233 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 1203 GATCACCCTTAGGAAATGTGGTTCAGTCCGGAAACGTCTCAGAGGCTATAGTGCACGCAA 1262 Query 1234 ATAGCCTTATCCAGTCTATGAGCAAATCCTCGAGTGTGGCTCACATATCGAGTATCGGCT 1293 |||||||||| || || |||||||||| ||||| ||||||||||| ||||| ||||||| Sbjct 1263 ATAGCCTTATTCAATCGCTGAGCAAATCATCGAGCGTGGCTCACATCTCGAGCATCGGCT 1322 Query 1294 TGAAAGCTATCCCGAGCATCTCACATTTTACAAGCCTCAAGTCGATTGATCTTTCAAACA 1353 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 1323 TGAAAGCTATCCCGAGCATCTCACATTTTACCAGCCTCAAGTCGATTGATCTATCAAACA 1382 Query 1354 ACTTCATAGTTCAAATTACTCCTGCATCGCTTCCAAAGGGCCTGCACGCGCTGAATCTTT 1413 |||||||||||||||||||||||||||||||||| |||||||| |||||| |||| |||| Sbjct 1383 ACTTCATAGTTCAAATTACTCCTGCATCGCTTCCTAAGGGCCTCCACGCGTTGAACCTTT 1442 Query 1414 CCAAGAACAAGATCAGTGTTATCGAAGGACTGAGAGATTTGACACGCCTAAGAGTACTCG 1473 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1443 CCAAGAACAAGATCAGTGTTATCGAAGGACTAAGAGATTTGACACGCCTAAGAGTACTCG 1502 Query 1474 ATCTCAGTTACAACCGAATTTCTCGCATTGGACAAGGTTTATCAAACTGTACACTGATCA 1533 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1503 ATCTAAGTTACAACCGAATTTCTCGCATTGGACAAGGTTTATCAAACTGTACACTGATCA 1562 Query 1534 AAGAACTATACCTAGCTGGGAACAAGATCAGCAATGTAGAAGGCTTACACAGATTGCTGA 1593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1563 AAGAACTATACCTAGCTGGGAACAAGATCAGCAATGTAGAAGGCTTACACAGATTGCTGA 1622 Query 1594 AACTTATCGTTCTTGATCTTAGCTTCAACAAGATCGCCACCACCAAAGCAATAGGCCAGC 1653 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1623 AACTTATTGTTCTTGATCTTAGTTTCAACAAGATCGCCACCACCAAAGCAATAGGCCAGC 1682 Query 1654 TTGTTGCCAACTACAACTCTCTTGTCGCTTTGAACATCCTCGGAAACCCGATTCAGAGTA 1713 |||| ||||||||||||||||| || |||||||||||||||||||||||||| |||| | Sbjct 1683 TTGTAGCCAACTACAACTCTCTCGTTGCTTTGAACATCCTCGGAAACCCGATCCAGAACA 1742 Query 1714 ACGTAGGCGAGGACCAGCTACGCAAGACCGTCTCCAGCCTTCTCCCTAAGCTAGTTTATC 1773 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 1743 ATGTAGGCGAGGACCAGCTACGCAAGACCGTTTCCAGCCTTCTCCCTAAGCTAGTTTACC 1802 Query 1774 TTAACAAGCAGCTCATCAAGCCACAACGAGCCAGGGAAGTACTCAAAGATAGTGTAGCGA 1833 ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1803 ATAACAAGCAGCTCATTAAGCCACAACGAGCCAGGGAAGTTCTCAAAGATAGTGTAGCGA 1862 Query 1834 GAGCTGCGTTTGGTGGTGGAGATTCTTTGCACCACAGGCGCAAAAGAACATCCACCAAAA 1893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1863 GAGCTGCGTTTGGTGGTGGAGATTCTTTGCACCACAGGCGCAAAAGAACATCCACCAAGA 1922 Query 1894 AAGTTGTGGGATCAGCCTCCCCTAGCGTTCAACACCAAGGCCGCATTGCAAGAGGACGTG 1953 ||||| ||||||||||||||||||||||| |||| ||||| |||||||| |||||||| Sbjct 1923 GTGTTGTTGGATCAGCCTCCCCTAGCGTTCACCACCGAGGCCACATTGCAAAAGGACGTG 1982 Query 1954 GTTCCAAAAACCGAAGCCAACATCAGCTAAGAAAAACTTCAGCTGCAGAGTCACCATTAC 2013 | ||||||||| ||||||||| ||| |||||||||||||||||||||| | | |||| || Sbjct 1983 GATCCAAAAACAGAAGCCAACGTCAACTAAGAAAAACTTCAGCTGCAGGGACGCCATCAC 2042 Query 2014 ACTGACAttttttttCTTT-TCTT-ATTTT-ATGAATTGGCCAATGCAAATTGCAAAG 2068 | ||| ||| || || ||| | || | | | ||||||||||||||||||||||||||| Sbjct 2043 ATTGA-ATTGTTCTT-TTTGT-TTGAATCTCATGAATTGGCCAATGCAAATTGCAAAG 2097 Score = 95.3 bits (51), Expect = 2e-18 Identities = 62/67 (93%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 1 CATGTGGCTCTTTTGCATGTTCTGTCATAAACCCGTCCATTTCATTCTTCCTCATCTTCT 60 |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct 1 CATGTGGCTCTTTTGCATGTTCTGTCATAAACACGTCCATTTCATTCATCCTCTTCTTCT 60 Query 61 ATCCTCT 67 || ||| Sbjct 61 -TCTTCT 66 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 104818737960 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5