BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477021 Length=2423 Score E Sequences producing significant alignments: (Bits) Value AT1G78570.1 | Symbols: RHM1, ROL1, ATRHM1 | rhamnose biosynthes... 3877 0.0 AT1G78580.1 | Symbols: ATTPS1, TPS1 | trehalose-6-phosphate syn... 150 5e-35 > AT1G78570.1 | Symbols: RHM1, ROL1, ATRHM1 | rhamnose biosynthesis 1 | chr1:29549649-29552438 FORWARD LENGTH=2463 Length=2463 Score = 3877 bits (2099), Expect = 0.0 Identities = 2309/2409 (96%), Gaps = 20/2409 (1%) Strand=Plus/Plus Query 25 ttttttGAATTTTGA---ttcttcttctccgcttctttcgcttcttcctcagcttcttca 81 ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| ||| Sbjct 65 TTTTTTGAATTTTGATTCTTCTTCTTCTCCGTTTCTTTCGCTACTTCCTCAGCTTCGTCA 124 Query 82 ccgtc-aaaagttcttcaCATTTT-CTCGGAATTTTCCAGTTATCTTC-CCAAAATTCTC 138 ||||| |||| |||||||| |||| |||||||||||||| || ||||| || ||||||| Sbjct 125 CCGTCGAAAA-TTCTTCACGTTTTCCTCGGAATTTTCCAATTGTCTTCTCC--AATTCTC 181 Query 139 TTGCTAACGTTGAAGATCTGAAAAATTCAAAGCGTTTAATCATGGCTTCGTACACTCCCA 198 |||| | ||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 182 TTGCGATCGTTGAAGATCTGAAAAATTCGAAGCGTTTGATCATGGCTTCGTACACTCCCA 241 Query 199 AGAACATTCTCATCACCGGAGCTGCTGGTTTCATTGCTTCACATGTAGCCAACAGACTCA 258 ||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||| Sbjct 242 AGAACATTCTCATCACCGGAGCTGCTGGTTTCATTGCGTCTCATGTCGCCAACAGACTCA 301 Query 259 TACGAAGCTATCCTGATTACAACATCGTTGTGCTTGACAAACTTGATTACTGTTCAAATC 318 |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 302 TACGAAGCTATCCTGATTACAAAATCGTTGTGCTTGACAAGCTTGATTACTGTTCAAATC 361 Query 319 TCAAGAATCTCAATCCTTCTAAACAGTCTCCGAATTTCAAGTTTGTCAAAGGTGATATCG 378 |||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||| Sbjct 362 TCAAGAATCTCAATCCTTCTAAGCACTCTCCGAACTTCAAGTTTGTCAAAGGTGATATCG 421 Query 379 CTAGTGCTGACTTGGTGAATCATCTTCTCATCACTGAAGGTATCGACACCATCATGCATT 438 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 422 CTAGTGCTGACTTGGTGAATCATCTTCTCATCACTGAAGGTATTGACACCATCATGCATT 481 Query 439 TCGCTGCTCAGACTCACGTCGACAATTCCTTCGGTAACAGTTTCGAGTTTACTAAGAATA 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 482 TCGCTGCTCAGACTCACGTCGACAATTCCTTCGGTAACAGTTTCGAGTTTACTAAGAATA 541 Query 499 ATATCTATGGAACTCATGTGCTTCTTGAGGCTTGTAAAGTTACTGGTCAGATTAGGAGGT 558 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 542 ATATCTATGGAACTCATGTCCTTCTTGAGGCTTGTAAAGTTACTGGTCAGATTAGGAGGT 601 Query 559 TTATTCATGTCAGTACTGATGAGGTTTATGGTGAAACTGATGAGGATGCTCTTGTTGGTA 618 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 602 TTATTCATGTTAGTACTGATGAAGTTTATGGTGAAACTGATGAGGATGCTCTTGTTGGTA 661 Query 619 ACCATGAGGCTTCTCAGCTACTTCCGACGAATCCTTACTCTGCCACGAAAGCTGGTGCGG 678 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 662 ACCATGAGGCTTCTCAGCTGCTTCCGACGAATCCTTACTCTGCCACGAAAGCTGGTGCTG 721 Query 679 AGATGCTTGTTATGGCTTATGGTAGGTCTTATGGGTTGCCTGTTATTACCACACGTGGGA 738 ||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| Sbjct 722 AGATGCTTGTTATGGCTTATGGTAGATCTTATGGTTTGCCTGTTATTACCACTCGTGGGA 781 Query 739 ACAACGTCTATGGACCGAATCAGTTTCCTGAGAAGTTAATTCCTAAGTTCATTTTGCTGG 798 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 782 ATAACGTCTATGGACCGAATCAGTTTCCTGAGAAGTTGATTCCTAAGTTCATTTTGCTGG 841 Query 799 CAATGAGAGGGCAAGTTCTTCCCATTCATGGAGATGGGTCAAATGTCAGGAGCTACCTGT 858 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 842 CAATGAGAGGGCAGGTTCTTCCCATTCATGGAGATGGATCAAATGTCAGGAGCTACCTCT 901 Query 859 ACTGTGAAGATGTTGCTGAGGCTTTTGAAGTTATTCTGCACAAGGGAGAAGTTGGCCATG 918 |||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 902 ACTGTGAAGACGTTGCTGAGGCTTTTGAAGTTGTTCTTCACAAGGGAGAAGTTGGCCATG 961 Query 919 TTTACAATATTGGGACGAAGAAGGAGAGGAGAGTCAATGATGTTGCCAGAGATATCTGCA 978 |||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| Sbjct 962 TTTACAATATTGGGACGAAGAAGGAGAGGAGAGTGAATGATGTTGCCAAAGACATCTGCA 1021 Query 979 AACTCTTCAGCATGGACCCTGAGGCGAACATCAAGTTTGTCGAGAACAGACCTTTTAACG 1038 ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1022 AACTCTTCAACATGGACCCTGAGGCGAACATCAAGTTTGTCGACAACAGACCTTTTAACG 1081 Query 1039 ATCAAAGGTACTTTCTTGACGATCAGAAGCTCAAAAAGTTGGGATGGTCAGAGAGGACCA 1098 |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1082 ATCAGAGGTACTTCCTTGACGATCAGAAGCTCAAAAAGTTGGGATGGTCAGAGAGAACCA 1141 Query 1099 CTTGGGAAGAAGGGTTGAAGAAAACTATGGAATGGTACACACAGAACCCGGAGTGGTGGG 1158 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1142 CGTGGGAAGAAGGGTTGAAGAAAACTATGGATTGGTACACACAGAACCCGGAGTGGTGGG 1201 Query 1159 GTGATGTTTCTGGAGCATTGCTTCCTCATCCAAGGATGTTGATGATGCCTGGCGGGCGAC 1218 |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 1202 GTGATGTTTCTGGAGCATTGCTTCCTCATCCAAGGATGCTGATGATGCCTGGTGGGCGAC 1261 Query 1219 ACTTTGATGGCTCGGAGGACAATTCTCTGGCAGCTACTTTATCAGAGAAACCAAGTCAAA 1278 ||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||| Sbjct 1262 ACTTTGATGGCTCCGAGGACAATTCGCTGGCAGCTACTTTATCTGAAAAACCAAGTCAAA 1321 Query 1279 CCCATATGGTTGTTCCAAGCCCAAGGAGCAACGGCACACCGCAAAAGCCTTCGCTGAAGT 1338 ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 1322 CCCATATGGTTGTTCCAAGCCAAAGGAGCAACGGCACACCTCAAAAGCCTTCGCTGAAGT 1381 Query 1339 TCTTGATATATGGAAAGACCGGATGGATTGGTGGTCTGCTTGGAAAGATATGTGAGAAGC 1398 || ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1382 TCCTGATATATGGAAAGACCGGATGGATCGGTGGTCTGCTTGGAAAGATATGTGATAAGC 1441 Query 1399 AAGGAATTGCTTACGAGTATGGGAAAGGTCGGTTGGAGGATCGATCATCTCTTCTGCAGG 1458 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1442 AAGGAATTGCTTACGAGTATGGGAAAGGTCGGTTGGAGGATCGATCTTCTCTTCTGCAGG 1501 Query 1459 ATATTCAGAGCGTTAAGCCAACCCATGTTTTCAATTCCGCTGGTGTGACCGGGAGACCCA 1518 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1502 ATATTCAGAGTGTTAAGCCAACCCATGTTTTCAATTCCGCTGGTGTGACTGGGAGACCCA 1561 Query 1519 ATGTTGACTGGTGTGAGTCTCACAAGACCGAGACTATCCGTGCCAATGTAGCTGGCACAT 1578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1562 ATGTTGACTGGTGTGAGTCTCACAAGACCGAGACTATCCGTGCCAATGTAGCTGGCACAT 1621 Query 1579 TGACTCTAGCTGATGTCTGCAGAGAGCATGGACTCCTGATGATGAATTTCGCTACTGGTT 1638 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 1622 TGACTCTAGCTGATGTCTGCAGAGAGCACGGACTCCTAATGATGAATTTCGCTACTGGTT 1681 Query 1639 GTATATTCGAATATGACGACAAGCATCCAGAAGGTTCAGGAATTGGCTTCAAGGAGGAAG 1698 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1682 GTATATTCGAATATGACGACAAGCATCCGGAAGGTTCAGGAATTGGCTTCAAGGAGGAAG 1741 Query 1699 ACACCCCCAACTTCACTGGCTCTTTTTACTCAAAAACCAAAGCCATGGTTGAGGAGCTGC 1758 |||| |||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| Sbjct 1742 ACACACCCAACTTCACTGGCTCTTTCTACTCGAAAACCAAAGCCATGGTCGAGGAGCTGC 1801 Query 1759 TAAAAGAGTATGACAACGTATGCACATTGAGGGTAAGGATGCCGATCTCCTCGGATCTAA 1818 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1802 TAAAGGAGTATGACAACGTATGCACATTGAGGGTAAGGATGCCGATCTCCTCGGATCTAA 1861 Query 1819 ACAACCCGCGCAACTTTATCACCAAGATCTCCAGGTACAACAAAGTAGTGAACATCCCAA 1878 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1862 ACAACCCGCGCAACTTCATCACCAAGATCTCCAGGTACAACAAAGTAGTGAACATCCCAA 1921 Query 1879 ACAGCATGACTGTGTTGGACGAGCTT-TTACCAATCTCCATCGAGATGGCGAAAAGAAAC 1937 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1922 ACAGCATGACTGTGTTGGACGAG-TTATTACCAATCTCCATCGAGATGGCGAAAAGAAAC 1980 Query 1938 TTGAAAGGAATCTGGAACTTCACAAACCCAGGTGTGGTGAGCCACAACGAGATCCTAGAG 1997 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1981 TTGAAAGGAATCTGGAACTTCACAAACCCAGGTGTGGTGAGCCACAACGAGATCCTAGAG 2040 Query 1998 ATGTACAGAGACTACATCAACCCTGAATTCAAATGGGCGAACTTCACATTAGAGGAGCAA 2057 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2041 ATGTACAGAGACTACATCAACCCTGAATTCAAATGGGCAAACTTCACATTAGAGGAGCAA 2100 Query 2058 GCTAAAGTCATTGTGGCACCAAGAAGCAACAACGAGATGGATGCTTCCAAGCTCAAGAAA 2117 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2101 GCTAAAGTCATTGTGGCTCCAAGAAGCAACAACGAGATGGATGCTTCCAAGCTCAAGAAA 2160 Query 2118 GAGTTCCCTGAGCTACTCTCTATTAAGGAGTCTCTGATTAAGTATGCATTCGAGCCAAAC 2177 ||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| Sbjct 2161 GAGTTCCCTGAGCTACTCTCTATCAAGGAGTCTCTGATTAAGTATGCATACGGGCCAAAC 2220 Query 2178 AAGAAAACCTGAAGAGAGAAAGATTGTGATTCGTCATTAGATTAATCATCTTTAATATCA 2237 ||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||||||| Sbjct 2221 AAGAAAACCTGAAGAGA-AT-GATTGTGATTCGTCATTAGAT-AATCACCTTTAATATCA 2277 Query 2238 GTTTCGTTTATTT-GTTTTGTTATTTGTTTAATTACCCCTTGTTTCATTAGATTTGCTTA 2296 ||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 2278 GTTTCGTGTATTTTGTTTTGTTATT-GTTTAATTACCCCTTCTTTCATTAGATTTGCTTA 2336 Query 2297 -GGGGTGTATTTGTAGTTCGAATATTATATGTAATAAGAGCTTGTTCACAATTT-TGTCA 2354 |||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| Sbjct 2337 AGGGGTGTATTTGTAGTTCGAATATTATATGTAATAAGAGCTTGTTCTCA-TTTGTGTCA 2395 Query 2355 TAAGTTGCTCTACTCTTATTTTATAAGAATCAAACCACTAAAAGAGTCTGGTAATGGCTG 2414 |||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| Sbjct 2396 TAAGTTGCTCTACTCTTATTATATTAGAATCAAACCACTAAA-GAGTCTGGTAATGGCTG 2454 Query 2415 CTTTTTGTT 2423 ||||||||| Sbjct 2455 CTTTTTGTT 2463 > AT1G78580.1 | Symbols: ATTPS1, TPS1 | trehalose-6-phosphate synthase | chr1:29552340-29560912 REVERSE LENGTH=3190 Length=3190 Score = 150 bits (81), Expect = 5e-35 Identities = 95/101 (94%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 2324 ATGTAATAAGAGCTTGTTCACAATTT-TGTCATAAGTTGCTCTACTCTTATTTTATAAGA 2382 ||||||||||||||||||| | |||| ||||||||||||||||||||||||| ||| ||| Sbjct 3190 ATGTAATAAGAGCTTGTTCTC-ATTTGTGTCATAAGTTGCTCTACTCTTATTATATTAGA 3132 Query 2383 ATCAAACCACTAAAAGAGTCTGGTAATGGCTGCTTTTTGTT 2423 |||||||||||||| |||||||||||||||||||||||||| Sbjct 3131 ATCAAACCACTAAA-GAGTCTGGTAATGGCTGCTTTTTGTT 3092 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 120330706365 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5