BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477024
Length=1130
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78600.2 | Symbols: LZF1 | light-regulated zinc finger prote... 880 0.0
> AT1G78600.2 | Symbols: LZF1 | light-regulated zinc finger protein
1 | chr1:29567106-29568815 FORWARD LENGTH=1377
Length=1377
Score = 880 bits (476), Expect = 0.0
Identities = 613/674 (91%), Gaps = 29/674 (4%)
Strand=Plus/Plus
Query 23 tttttGGGTTTTCTGGATGAGTTTGAGATAAGAGAGGATGAAGATTCAGTGCAACGTTTG 82
|||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 228 TTTTTGCGTTTTCTGGATGAGTTTGAGATAAGAGAAGATGAAGATTCAGTGTAACGTTTG 287
Query 83 TGAGGCGGCGGAAGCGACGGTGCTATGTTGCGCCGACGAGGCTGCTCTGTGTTGGGCATG 142
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 288 TGAGGCGGCGGAAGCGACGGTTCTATGTTGCGCCGACGAGGCTGCTCTTTGTTGGGCTTG 347
Query 143 CGATGAGAAAGTCCACGCTGCTAATAAACTCGCCGGAAAACACCAGAGAGTTCCTCTCTC 202
|||||||||| | ||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 348 CGATGAGAAAATTCACGCCGCTAATAAACTCGCCGGAAAACATCAGAGAGTCCCTCTCTC 407
Query 203 TGTCTCTTCCTCTTCCATACCCAAATGCGACATTTGTCAGGAAGCATCTGGATTCTTCTT 262
|| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 408 TGCCTCTGCCTCTTCCATACCCAAATGTGACATTTGTCAGGAAGCATCTGGATTCTTCTT 467
Query 263 CTGTCTGCAAGATAGAGCTTTACTATGTAGGAAATGTGATGTTGCAATCCACACTGTAAA 322
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 468 TTGTCTGCAAGATAGAGCTTTGCTATGTAGGAAATGTGATGTTGCAATCCACACTGTGAA 527
Query 323 TCCTCATGTTTCAGCTCATCAGAGATTTCTTCTGACTGGAATCAAAGTTGGTCTTGAATC 382
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 528 TCCTCATGTTTCAGCTCACCAGAGATTTCTTCTCACTGGAATCAAAGTTGGTCTTGAATC 587
Query 383 TATAGACACTGGTCCTTCTACAAAATCCTCACCAACCAATGATGATAAAACCATGGAGAC 442
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 588 TATAGACACTGGTCCTTCTACTAAATCCTCACCTACCAATGATGATAAAACCATGGAGAC 647
Query 443 GAAATCTTTTGTTCAATCTATACCTGAGCCTCAAAAGATGG-----G-T--T--TC---- 488
||| |||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 648 CAAACCTTTTGTTCAATCTATACCTGAGCCTCAAAAGATGGCCTTCGATCATCATCATCA 707
Query 489 ---G-ATCAGCAG---CA--AGGA-GT--TT-TACCGGAAACTAAAGTCAGTGATCACAC 535
| | |||||| || |||| | || |||||| ||||||||||| |||||| ||
Sbjct 708 CCAGCAGCAGCAGGAACAGCAGGAAGGAGTTATACCGGGAACTAAAGTCAATGATCAGAC 767
Query 536 ATCTACAAAGCTTCCTTTCGCTA-GCAGCGGATCAACTACTGGAAGCATTCCTCAGTGGC 594
||| |||||||||||| ||| || | ||||||||||||||||||||||||||||||||||
Sbjct 768 ATCGACAAAGCTTCCTCTCG-TAAGTAGCGGATCAACTACTGGAAGCATTCCTCAGTGGC 826
Query 595 AAATAGAGGAGATTTTCGGACTAACCGACTTTGATCAGAGCTATGAATACATGGAGAATA 654
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 827 AAATAGAGGAGATTTTCGGGCTAACCGACTTTGATCAGAGCTATGAATACATGGAGAATA 886
Query 655 ATGGATCATCTAAG 668
||||||||||||||
Sbjct 887 ATGGATCATCTAAG 900
Score = 649 bits (351), Expect = 0.0
Identities = 396/418 (95%), Gaps = 1/418 (0%)
Strand=Plus/Plus
Query 669 GCGGATACTTGTAGACGAGGAGATTCAGACAGTTCTTCCATGATGAGATCTGCCGAAGAA 728
||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 961 GCGGATACTAGTAGACGAGGAGATTCAGACAGTTCTTCGATGATGAGATCTGCAGAAGAA 1020
Query 729 GATGGAGAAGATAACAATAACTGCTTGGGAGGTGAGACATCATGGGCGGTTCCACAGATT 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GATGGAGAAGATAACAATAACTGCTTGGGAGGTGAGACATCATGGGCGGTTCCACAGATT 1080
Query 789 CAGTCTCCACCTACAGCTTCTGGTCTAAACTGGCCTAAGCATTTTCACCACCACTCAGTG 848
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1081 CAGTCTCCACCTACAGCGTCTGGTCTAAACTGGCCTAAGCATTTTCACCACCACTCTGTG 1140
Query 849 TTTGTTCCGGACATAAATTTTTCAACTCCTTATTCCGGTTCATCCCCGAACCAAAGGGTT 908
|||||||||||||||| || ||||||||||||| |||||||||||||||| |||||||||
Sbjct 1141 TTTGTTCCGGACATAACTTCTTCAACTCCTTATACCGGTTCATCCCCGAATCAAAGGGTT 1200
Query 909 GGGAAACGGTGGCGACGGTTCTAACATTCACAACTATCTTTTGGCCGTTTGAGAAAAGAG 968
||||||||| ||||||||||||| |||| || |||||||| |||| ||||||||||||
Sbjct 1201 GGGAAACGGCGGCGACGGTTCTAGCATTTGTAATTATCTTTTAGCCGCTTGAGAAAAGAG 1260
Query 969 ATGGGCAGCTTTTCTCAGTAGATGTAAGATCACATAAATGATTTGGAAACTTGTAATGTA 1028
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 ATTGGCAGCTTT-CTCAGTAGATGTAAGATCACATAAATGATTTGGAAACTTGTAATGTA 1319
Query 1029 GTGATCTGTGAGAGTCCATGTTCTTTGTTAGCTGaaaaaacaaaaaGATGTTAATTTG 1086
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1320 GTGATCTGTGAGAGTCGGTGTTCTTTGTTAGCTGAAAAAACAAAAAGATGTTTATTTG 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421401680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5