BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477028 Length=981 Score E Sequences producing significant alignments: (Bits) Value AT1G78630.1 | Symbols: emb1473 | Ribosomal protein L13 family p... 1524 0.0 > AT1G78630.1 | Symbols: emb1473 | Ribosomal protein L13 family protein | chr1:29575956-29577658 FORWARD LENGTH=1019 Length=1019 Score = 1524 bits (825), Expect = 0.0 Identities = 895/929 (96%), Gaps = 4/929 (0%) Strand=Plus/Plus Query 1 AAAGAGCAGAAGAATTTTGCAGAAGAAAGAAAAACAAAAATGGCGGTTCTTTGCTCGTCT 60 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 3 AAAGAGCAGAAGAAATTTGCAGAAGAGAGAAAAACAAAAATGGCGGTTCTTTGCTCGTCT 62 Query 61 TCGACGGTGATACTCCCTACTTCTTCCGTGAAATCCTCCGGTTGTGAGAGAAAGTCTCCG 120 ||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||| Sbjct 63 TCGACGGTGATACTCTCTTCTTCTTCCGTGAAATCCTCCGGAAGTGAGAGAAAGTCTCCG 122 Query 121 TTTTTAGGGTTCTCTCTAACGGCTATCTCGAAGCCGTCGGTAAGAGTTGGCATTTATGCG 180 ||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||| Sbjct 123 TTTTTAGGGTTCTCTTTAACGGCTATCTCGAAGCCGTCGGTACGAGTCGGCATTTATGCG 182 Query 181 AATTCGAAAAGAGGATTGCAAGTGAAGTGTGAAGCTGAGCAGACGACGACGACGACTTCT 240 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 183 AATTCGAAAAGAGGATTGCAAGTGAAGTGTGAAGCTGAGC---CGACGACGACGACTTCT 239 Query 241 CTTGTTCCGGCGAATCAGCGATGGATGTTCGACGAAGAAGAAGCCAATGGCCCTGACATC 300 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 240 CTTGTTCCGGCGAATCAACGATGGATGTTCGACGAAGAAGAAGCTAATGGCCCTGACATC 299 Query 301 TGGAACACGACATGGTATCCAAAAGCTTCAGACCATGTGAACACGGATAAGCCCTGGTTT 360 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 300 TGGAACACGACATGGTATCCAAAAGCTTCAGACCATGTGAACACGGACAAGCCCTGGTTT 359 Query 361 GTGGTTGATGCAACTGACAAAATTCTTGGTAGATTGGCATCAACAATTGCTAATCACATC 420 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 360 GTGGTTGATGCAACTGACAAAATTCTTGGTAGATTGGCATCGACAATTGCTAATCACATC 419 Query 421 CGTGGGAAGAATCTTGCCTCTTACACTCCTAGTGTTGACATGGGAGCCTTTGTGATTGTG 480 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 420 CGTGGGAAGAATCTTGCCTCTTACACTCCTAGTGTCGACATGGGAGCTTTTGTGATTGTG 479 Query 481 GTGAATGCTGAGAAAGTTGCTGTATCTGGAAAAAAGCGGAACCAAAAGCTGTACAGGAGG 540 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 480 GTGAATGCTGAGAAAGTTGCTGTATCTGGAAAGAAGCGTAACCAAAAGCTGTACAGGAGG 539 Query 541 CATTCAGGACGACCTGGTGGTATGACAGTAGAGACATTTGATCAATTGCAGCAGAGAATT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CATTCAGGACGACCTGGTGGTATGACAGTAGAGACATTTGATCAATTGCAGCAGAGAATT 599 Query 601 CCTGAAAGAATCGTTGAGCATGCTGTTCGTGGAATGCTTCCAAAGGGAAGGCTTGGGAGA 660 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 600 CCTGAAAGAATCGTTGAGCATGCTGTTCGTGGAATGCTTCCAAAGGGACGGCTTGGGAGA 659 Query 661 GCTCTGTTCAATCACCTGAAGGTGTACAAAGGCCCGGACCATCCACACGAGGCCCAGAAG 720 ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 660 GCTCTGTTCAATCACCTGAAGGTGTACAAAGGCCCTGACCATCCTCACGAGGCCCAGAAA 719 Query 721 CCGCTTGATCTGCCTATTAGGGACAAGAGAATACAGCTGCAAAAATAGAAGCACCTCCAC 780 ||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||| Sbjct 720 CCGCTTGATCTGCCTATCAGGGACAAGAGAATACAGCTGCAAAAATAGAAGCTCCACCAC 779 Query 781 TGTTCCATTATCGCCAAGCGCAGAGAGTTTTTTCTTCTCAGGTTTCTGTAGTTTCTTCAT 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TGTTCCATTATCGCCAAGCGCAGAGAGTTTTTTCTTCTCAGGTTTCTGTAGTTTCTTCAT 839 Query 841 TC-AAAACCAGAGGAGGCTTTGCAGATTCTTGTTATCGCTTCTATCAACTCTGTTATGCT 899 | |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 840 CCCAAAACCAGAGGAGGCTTTACAGATTCTTGTTTTCGCTTCTATCAACTCTGTTATGCT 899 Query 900 ATAAAGCTTTCTAATGTGAAATATTTCTC 928 | ||| ||||||||| ||||||||||||| Sbjct 900 ACAAAACTTTCTAATTTGAAATATTTCTC 928 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48023844532 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5