BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477073 Length=661 Score E Sequences producing significant alignments: (Bits) Value AT1G79040.1 | Symbols: PSBR | photosystem II subunit R | chr1:2... 948 0.0 > AT1G79040.1 | Symbols: PSBR | photosystem II subunit R | chr1:29736016-29737009 FORWARD LENGTH=720 Length=720 Score = 948 bits (513), Expect = 0.0 Identities = 592/629 (94%), Gaps = 10/629 (2%) Strand=Plus/Plus Query 3 GAGAATAATAGTTTGATCATCTTGTGAG-AAAATAATGGCTGCTTCAGTGATGCTTTCAT 61 ||||| |||||||||||||||||||||| |||||||||||||||||||||||||| || | Sbjct 35 GAGAAGAATAGTTTGATCATCTTGTGAGAAAAATAATGGCTGCTTCAGTGATGCTATCTT 94 Query 62 CGGTGACATTGAAACCAGCTGGTTTCACGGTGGAGAAGACGGCGGCCAGAGGATTACCGT 121 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 95 CGGTGACATTGAAACCAGCTGGTTTCACGGTGGAGAAGACGGCGGCTAGAGGATTACCGT 154 Query 122 CGCTAACAAGAGCTCGTCCCTCCTTCAAAATCGTCGCCAGTGGCGGCAAGAAGATCAAGA 181 |||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 155 CGCTCACAAGAGCTCGTCCCTCCTTCAAAATTGTCGCCAGTGGCGTCAAGAAGATCAAGA 214 Query 182 CCGACAAGCCCTAT-GGAATCAACGGTAGCATGGACTTGAGGGACGGCGTCGACGCCTCC 240 |||||||||||| | ||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 215 CCGACAAGCCCT-TCGGAATTAACGGCAGCATGGACTTGAGGGACGGCGTCGACGCCTCC 273 Query 241 GGCAGAAAGGGCAAGGGATACGGTGTTTACAAATACGTCGACAAGTATGGAGCTAACGTC 300 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 274 GGCAGAAAGGGCAAGGGATACGGTGTTTACAAGTACGTCGACAAGTATGGAGCTAACGTC 333 Query 301 GATGGATACAGTCCTATTTACAACGAGAACGATTGGTCAGCGAGTGGTGACGTGTACAAG 360 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 334 GATGGATACAGTCCTATTTACAACGAGAACGAGTGGTCAGCGAGTGGTGACGTGTACAAG 393 Query 361 GGAGGAGCCACCGGATTGGCTATTTGGGCGGTTACTCTCGCCGGTATTCTCGCCGGAGGA 420 ||||||| |||||||||||| ||||||||||| ||||||||||| ||||| |||||||| Sbjct 394 GGAGGAGTCACCGGATTGGCAATTTGGGCGGTAACTCTCGCCGGAATTCTTGCCGGAGGT 453 Query 421 GCTCTTCTTGTGTACAACACCAGTGCGTTGGCTCAGTAAATCTTTAAGTTGTTAGCGCAT 480 |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| Sbjct 454 GCTCTTCTTGTGTACAACACAAGTGCTTTGGCTCAGTAAATCTTAAAGTTGTTAGCGCAT 513 Query 481 GTGTAATCATGTTTCTATAAATGTGTCGTCTGTGTTGTTGTTCTCTTTCTCTCTAATGTT 540 |||||||||||||||||||||||| | ||||||||||| |||||||||||||||||| Sbjct 514 GTGTAATCATGTTTCTATAAATGT-T--TCTGTGTTGTT---CTCTTTCTCTCTAATGTT 567 Query 541 TTAAAACTCAGAAATACTTTCAAATTTATAAGACTTCTAGTGTTTGTATATATATTCATC 600 ||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 568 GTAAAACTCAGACATACTTTGAA-TTTATAAGACTTCTAGTGTTTGTATATATATTCATC 626 Query 601 TTCCTCTTCTTTGTGATTTCGATGCACAA 629 ||||| | |||| ||||||| |||||||| Sbjct 627 TTCCTATCCTTTATGATTTCCATGCACAA 655 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31948917492 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5