BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477104 Length=603 Score E Sequences producing significant alignments: (Bits) Value AT1G79390.1 | Symbols: | unknown protein; Has 30201 Blast hits... 887 0.0 > AT1G79390.1 | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:29863225-29864321 REVERSE LENGTH=666 Length=666 Score = 887 bits (480), Expect = 0.0 Identities = 548/581 (94%), Gaps = 4/581 (1%) Strand=Plus/Plus Query 1 GAGAGAGAGATGTCGTTCATGTATGAGAAGAGCAATACATGGAGATGGCTAGTGATGAAG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 37 GAGAGAGAGATGTCGTTCATGTATGAGAAGAGCAATACATGGAGATGGCTAGTGATGAAG 96 Query 61 ACGCGAGATTCGAGATCCTTCTTCTTCACGTTCGCTGCTCTATGTGGTGTGATTCCTGGC 120 ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 97 ACGCGAGATTCGAGATCCTTCTTCTTCACGTTCGCTGCTTTATGTGGTGTCATTCCTGGC 156 Query 121 GTTATCGGCTATGGAGTTATGCAGGTCACCAATTCCAGTAACCCTGAGCTCGAAGCCCGC 180 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 157 GTTATTGGCTATGGAGTTATGCAGGTCACCAATTCCAGTAACCCTGAGCTCGAAGCCCGC 216 Query 181 CTCCGTAAATCTGCTCGCCCCGATACCCTCATGATGGGTAAAGTAAACCAAGAGAGGCTA 240 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 217 CTCCGTAAATCTGCTCGCCCAGATACTCTCATGATGGGTAAAGTAAACCAAGAGAGGCTA 276 Query 241 GCTGAGTATCTCGGTGAGTTGAAACAGAAGCAGGACACAAATGACAGATACGTGGCTGCT 300 ||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||| Sbjct 277 GCTGAATATCTTGGTGAGTTGAAACAGAAGCAGGATACAAACGACAGATACGTTGCTGCT 336 Query 301 CTTAGGGGACAGACTCTTACCAGGAAGCCTTATCAAAGAATCCAACCAGTGCCAAAGCCA 360 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 337 CTTAGGGGAGAGACTCTTACCAGGAAGCCTTATCAAAGAATCCAACCAATGCCAAAGCCA 396 Query 361 GATGACACGGTGACAACCAAAGCTCAGTAAAGGATGAATTCTTTTAAGAGTCAGTGTTAG 420 ||||||||||||||||||||| |||||||| ||||||||| |||||||||||| |||||| Sbjct 397 GATGACACGGTGACAACCAAAACTCAGTAA-GGATGAATTATTTTAAGAGTCAATGTTAG 455 Query 421 TGGATGCCTCTCACTCGAATCTTTTGTCGATGCAAAAATGGCATGTTTACTGGCCGTAAT 480 || |||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| Sbjct 456 TGAATGCCTCTCACTCGAATCTTTTGTCGATACAAAAATGGCGTGTTTCCTGGCCGTAAT 515 Query 481 Atttttt-tttttGGAACCGGCATCTAGCGACACAGCTTTTGTGCTATGCAAACTGCTGC 539 || |||| |||||| |||||||||||||||||||| |||||||||||||||||| ||| | Sbjct 516 ATCTTTTGTTTTTGAAACCGGCATCTAGCGACACAACTTTTGTGCTATGCAAACGGCTAC 575 Query 540 AACT-TCAGTCACCTCAAACATTTTGCTATGATAAATAAAA 579 || | ||| |||| |||||| ||||| |||||| ||||||| Sbjct 576 AA-TGTCAATCACTTCAAACCTTTTGTTATGATGAATAAAA 615 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29035336966 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5