BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477120 Length=1560 Score E Sequences producing significant alignments: (Bits) Value AT1G79520.2 | Symbols: | Cation efflux family protein | chr1:2... 1757 0.0 > AT1G79520.2 | Symbols: | Cation efflux family protein | chr1:29912251-29914615 REVERSE LENGTH=1463 Length=1463 Score = 1757 bits (951), Expect = 0.0 Identities = 1047/1092 (96%), Gaps = 12/1092 (1%) Strand=Plus/Plus Query 478 AAAAGGAACGCAAAGTCTCTGAGTACTACAAACAGCAAGAGAAGCTCCTGGAGGGTTTCA 537 ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 330 AAAAGGAACGCAAAGTCTCAGAGTACTACAAACAGCAAGAGAAGCTTCTGGAGGGTTTCA 389 Query 538 ATGAGATGGAGTCAATTAACGAGACTGGTTTTGTATCTGGAGCTCCAACTGAGGAAGAAC 597 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 390 ATGAGATGGAGACAATTAACGAAACTGGTTTTGTATCTGGAGCTCCAACTGAGGAAGAAC 449 Query 598 TGAAGAAGCTTGCAAAGAGCGAGAGGCTTGCTGTTCACATCTCAAACGCAGCAAACCTTG 657 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 450 TGAAGAAGCTTGCAAAGAGCGAGAGGCTTGCAGTTCACATCTCAAACGCAGCAAACCTTG 509 Query 658 TGCTTTTTGTAGCAAAGGTTTATGCTTCTGTGGAGAGTAGATCTATGGCTGTGATTGCTT 717 |||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 510 TGCTTTTTGTAGCAAAAGTTTATGCTTCTGTGGAGAGTAGGTCTATGGCTGTCATTGCTT 569 Query 718 CCACTTTGGACTCTCTCTTAGATCTCTTGTCTGGATTTATTCTATGGTTTACCGCTAATG 777 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 570 CCACTTTGGACTCTCTCTTAGATCTCTTGTCTGGATTTATTCTATGGTTTACTGCTAATG 629 Query 778 CCATGAGAACACCAAACAATTTTCGCTATCCAATTGGAAAACGACGGATGCAACCTGTGG 837 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 630 CCATGAGAACACCTAACAATTTTCGCTATCCAATTGGAAAACGACGGATGCAACCTGTGG 689 Query 838 GAATCATTGTGTTTGCATCCGTGATGGCAACTCTTGGACTACAAGTGATACTAGAGTCAA 897 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 690 GAATCATTGTGTTTGCATCTGTGATGGCAACTCTTGGACTACAAGTGATACTAGAGTCAA 749 Query 898 CCAGGCTACTTGTTTCCAAGAAGGGTTCTCATATGAGTAGCACTGAGGAAAAATGGATGA 957 | |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 750 CTAGGCTACTTGTTTCCAAGAATGGTTCTCATATGAGTAGCACCGAGGAAAAATGGATGA 809 Query 958 TTGGAATAATGGCTTCTGCTACAGTCGTCAAGTTTCTGCTCATGCTTTATTGCAGGAGTT 1017 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 810 TTGGAATAATGGCTTCAGCTACAGTCGTCAAGTTTCTGCTCATGCTTTACTGCAGGAGTT 869 Query 1018 TCCAGAACGAAATTGTTAGGGCCTATGCACAAGATCACCTCTTTGATGTTATCACCAACT 1077 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 870 TCCAGAACGAAATTGTCAGGGCCTATGCACAAGATCACCTCTTTGATGTTATCACCAATT 929 Query 1078 CAGTCGGTTTAGCAACAGCTGTTTTAGCTGTAAAATTCTACTGGTGGATTGATCCCTCTG 1137 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 930 CAGTCGGTTTAGCAACCGCTGTTTTAGCTGTAAAATTCTACTGGTGGATTGATCCCTCTG 989 Query 1138 GGGCTATATTAATTGCTCTGTACACAATCAGCACATGGGCAAGAACGGTTCTAGAGAATG 1197 |||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 990 GGGCTATACTAATTGCCCTGTATACAATCAGCACATGGGCAAGAACAGTTCTAGAGAATG 1049 Query 1198 TCCATTCACTGATAGGACGTTCAGCACCACCGGATTTCTTGGCTAAACTAACGTTCTTGA 1257 ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| Sbjct 1050 TCCATTCACTGATAGGACGCTCAGCACCACCAGATTTCTTGGCGAAACTAACGTTCTTGA 1109 Query 1258 TATGGAACCATCACGAGAAGATAAAACACATTGACACAGTGAGAGCCTACACGTTTGGGT 1317 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1110 TTTGGAACCATCACGAGAAGATAAAACACATAGACACAGTGAGAGCCTACACGTTTGGGT 1169 Query 1318 CACACTACTTTGTGGAAGTAGACATTGTGTTGCCAGAGAACATGAGGCTGCATGAAGCTC 1377 ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 1170 CACACTACTTTGTGGAAGTTGACATTGTGTTGCCAGAGGACATGAGGCTGCATGAAGCTC 1229 Query 1378 ACAACATAGGAGAAACTCTTCAGGAGAAGCTGGAGCAACTCTCTGAGGTTGAGAGAGCTT 1437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1230 ACAACATAGGAGAAACTCTTCAGGAGAAGCTGGAGCAACTCTCTGAGGTTGAGAGAGCTT 1289 Query 1438 TTGTCCATATTGACTTTGAGTTTACTCATCGTCCAGAACACAAATGCAAGGTTTGAATAT 1497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1290 TTGTCCATATTGACTTTGAGTTTACTCATCGTCCAGAACACAAATGCAAGGTTTGAATAT 1349 Query 1498 CCCAATAGGTTAATGGAT--A-A-----TAAATTAAGCAGG-TAGTCTTTTGATTTCTCT 1548 | | |||||||||||||| | | ||||||||||||| | |||| ||||||||| Sbjct 1350 CACGATAGGTTAATGGATCCAGAGGAAATAAATTAAGCAGGAT-GTCTC--GATTTCTCT 1406 Query 1549 AGAGTTTTTGTT 1560 |||||||||||| Sbjct 1407 AGAGTTTTTGTT 1418 Score = 436 bits (236), Expect = 2e-121 Identities = 274/291 (94%), Gaps = 7/291 (2%) Strand=Plus/Plus Query 1 AAAGTTCCAAAAAAGGGGCCAAAAAATAAGCAACAAGTTTTGATTCTCTCGTAACTTCCC 60 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 3 AAAGTTCCAAAAAAGAGGCCAAAAAATAAGCAACAACTTTTGATTCTCTCGTAACTTCCC 62 Query 61 CCA-AAAAT---C--AGC-AGAGCGAGAGCGATCGGTTATGGCGGCGACGGAGCATCACG 113 ||| ||||| | ||| |||||||||||||||||||||||||||||||||||||| || Sbjct 63 CCACAAAATCAGCAGAGCGAGAGCGAGAGCGATCGGTTATGGCGGCGACGGAGCATCGCG 122 Query 114 GCCTCAGTGGAGGAGACTACAATGTCGACCTTTTACCAATTGACGAAGACGATTCGCCAC 173 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 123 GCCTCAGTGGAGGAGACTACAATGTCGACCTTTTACCAATTGACCAAGACGATTCGCCAC 182 Query 174 CATCTTCATGGCGTCTCAGCCTCGACACATTTCGCCTCCCTTCTTCTTCTCCGTTATCAT 233 ||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||| Sbjct 183 CATCTTCATGGCGTCTCAGCCTCGACACATTCCGTCTCCCTTCTTCTTCACCGTTATCAT 242 Query 234 CTGGCCGCCACAACGGCCGTACTCGCTTGTCTCGTTATCTCCGGACTCCGA 284 | || || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 CAGGACGTCACAACGGCCGTACTCGCTTGTCTCGTTATCTCCGGACTCCGA 293 Score = 313 bits (169), Expect = 4e-84 Identities = 185/193 (96%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 285 ATGGCGGCGACGGAGCATCACGGCCTCAGTGGAGGAGACTACAATGTCGACCTTTTACCA 344 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 101 ATGGCGGCGACGGAGCATCGCGGCCTCAGTGGAGGAGACTACAATGTCGACCTTTTACCA 160 Query 345 ATTGACGAAGACGATTCGCCACCATCTTCATGGCGTCTCAGCCTCGACACATTTCGCCTC 404 |||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 161 ATTGACCAAGACGATTCGCCACCATCTTCATGGCGTCTCAGCCTCGACACATTCCGTCTC 220 Query 405 CCTTCTTCTTCTCCGTTATCATCTGGCCGCCACAACGGCCGTACTCGCTTGTCTCGTTAT 464 ||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||| Sbjct 221 CCTTCTTCTTCACCGTTATCATCAGGACGTCACAACGGCCGTACTCGCTTGTCTCGTTAT 280 Query 465 CTCCGGACTCCGA 477 ||||||||||||| Sbjct 281 CTCCGGACTCCGA 293 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77007636030 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5