BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477124
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79550.1 | Symbols: PGK | phosphoglycerate kinase | chr1:299... 2311 0.0
AT3G12780.1 | Symbols: PGK1 | phosphoglycerate kinase 1 | chr3:... 632 3e-180
> AT1G79550.1 | Symbols: PGK | phosphoglycerate kinase | chr1:29924023-29926442
REVERSE LENGTH=1677
Length=1677
Score = 2311 bits (1251), Expect = 0.0
Identities = 1372/1430 (96%), Gaps = 10/1430 (1%)
Strand=Plus/Plus
Query 94 CAGTGTTTTTAATTTGTCTTACGAAGAATCTACTATGGCGACGAAGAGAAGCGTTGGAAC 153
||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 114 CAGTGTTTTTAGTTTGTTTTACGAAGAATCAACTATGGCGACGAAGAGAAGCGTTGGAAC 173
Query 154 TTTGAAGGAAGCGGATCTGAAAGGAAAGAGTGTGTTCGTGAGGGTTGATCTCAACGTTCC 213
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 174 TTTGAAGGAAGCGGATCTGAAGGGAAAGAGTGTGTTCGTGAGGGTTGATCTCAACGTTCC 233
Query 214 TTTGGATGATAACTCTAACATCACCGATGACACCAGGATTCGTGCCGCTGTTCCCACCAT 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TTTGGATGATAACTCTAACATCACCGATGACACCAGGATTCGTGCCGCTGTTCCCACCAT 293
Query 274 CAAGTACTTGATGGGTAACGGATCTAGGGTTGTTCTCTGCAGTCACTTGGGCCGCCCAAA 333
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CAAGTACTTGATGGGTAATGGATCTAGGGTTGTTCTCTGCAGTCACTTGGGCCGCCCAAA 353
Query 334 AGGTGTTACTCCTAAGTACAGCTTAAAGCCTCTTGTGCCGAGATTGTCTGAACTTCTTGG 393
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 354 AGGTGTTACTCCTAAGTACAGCTTAAAGCCTCTTGTGCCCAGATTGTCTGAACTTCTTGG 413
Query 394 TGTTGAGGTTGTAATGGCAAATGACTCTATTGGTGAGGAAGTCCAGAAGTTGGTTGCAGG 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TGTTGAGGTTGTAATGGCAAATGACTCTATTGGTGAGGAAGTCCAGAAGTTGGTTGCAGG 473
Query 454 ACTACCTGAAGGTGGTGTTTTGCTCTTGGAGAATGTGAGGTTCTACGCTGAAGAAGAGAA 513
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 474 ACTACCTGAAGGTGGTGTTTTGCTCTTGGAGAATGTGAGGTTCTACGCCGAGGAAGAGAA 533
Query 514 GAACGATCCTGAATTTGCAAAGAAGCTTGCTGCTCTTGCCGATGTCTATGTTAATGATGC 573
||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 534 GAATGATCCTGAATTTGCAAAGAAGCTTGCTGCTCTTGCCGATGTTTACGTTAATGATGC 593
Query 574 CTTCGGAACTGCTCACAGAGCTCATGCTTCCACTGAGGGTGTTGCCAAATACTTGAAGCC 633
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 594 CTTCGGAACTGCTCACAGAGCTCATGCTTCCACTGAGGGAGTTGCCAAATTCTTGAAGCC 653
Query 634 TTCAGTTGCTGGTTTCCTCATGCAAAAGGAACTTGATTACCTTGTTGGAGCTGTGGCAAA 693
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 654 TTCAGTTGCTGGTTTCCTCATGCAGAAGGAACTTGATTACCTTGTCGGAGCTGTGGCAAA 713
Query 694 CCCCAAGAAGCCTTTTGCTGCCATTGTTGGAGGCTCAAAGGTTTCAACAAAGATTGGTGT 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 CCCCAAGAAGCCTTTTGCTGCCATTGTTGGAGGCTCAAAGGTTTCAACAAAGATTGGTGT 773
Query 754 CATTGAGTCACTCTTGTCCACAGTTGACATCCTCCTGCTCGGTGGAGGTATGATTTTCAC 813
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 774 CATTGAGTCTCTCTTGAACACAGTTGACATCCTCCTGCTCGGTGGAGGTATGATTTTTAC 833
Query 814 TTTCTACAAGGCACAAGGACTCTCAGTCGGATCTTCCCTTGTGGAGGAGGACAAGCTTGA 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TTTCTACAAGGCACAAGGACTCTCAGTCGGATCTTCCCTTGTGGAGGAGGACAAGCTTGA 893
Query 874 CTTGGCAAAGTCACTCATGGA-AAAGGCAAAGGCCAAAGGTGTCTCTCTCTTGCTCCCAA 932
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 894 CTTGGCAAAGTCACTCATGGAGAAAG-CAAAGGCCAAAGGTGTCTCTCTCTTGCTCCCAA 952
Query 933 CCGATGTGGTTATTGCTGACAAGTTTGCTCCAGATGCTAACAGCAAGATAGTGCCAGCCA 992
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 953 CCGATGTGGTTATTGCTGACAAGTTTGCTCCCGATGCTAACAGCAAGATAGTGCCAGCCA 1012
Query 993 CTGCCATCCCAGATGGCTGGATGGGTCTAGATATTGGTCCAGATTCCATCAAGACATTCA 1052
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1013 CTGCCATCCCTGATGGCTGGATGGGTCTAGATATTGGTCCAGACTCCATCAAGACATTCA 1072
Query 1053 GCGAAGCTCTGGACACAACCAAAACCATCATCTGGAATGGTCCCATGGGTGTTTTTGAAT 1112
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1073 GCGAAGCTCTGGACACAACCAAAACCATCATCTGGAATGGTCCCATGGGTGTGTTTGAAT 1132
Query 1113 TCGATAAGTTTGCAGCTGGAACTGAGGCCGTAGCAAAGCAGCTTGCAGAACTAAGCGGAA 1172
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 TCGATAAGTTTGCTGCTGGAACTGAGGCCGTAGCAAAGCAGCTTGCAGAACTAAGCGGAA 1192
Query 1173 AGGGAGTAACCACAATCATTGGAGGGGGTGACTCTGTTGCTGCTGTCGAGAAGGTCGGTT 1232
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1193 AGGGAGTAACCACAATCATTGGAGGAGGTGACTCTGTTGCTGCCGTCGAGAAGGTTGGTT 1252
Query 1233 TGGCTGACAAGATGAGTCACATCTCTACCGGAGGTGGTGCTAGTTTGGAGCTTCTTGAGG 1292
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1253 TGGCAGACAAGATGAGCCACATCTCTACCGGAGGCGGTGCTAGTTTGGAGCTTCTTGAGG 1312
Query 1293 GGAAGCCACTTCCAGGAGTCCTCGCTCTTGATGAAGCTTGAGAATCCTCACTTTGGATTT 1352
| |||||||||||||||||||||||||| || ||||||||| ||||||||| ||||||||
Sbjct 1313 GTAAGCCACTTCCAGGAGTCCTCGCTCTCGACGAAGCTTGAAAATCCTCACGTTGGATTT 1372
Query 1353 TTATCTCTCTTTTGTGTTGTTATATGTATAACAAGTTGTCTGGTTCTCTCATGACCAGAC 1412
||| || ||||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 1373 C-ATCGCTATTTTGTGTTGTTATATGTATAACAAGTCGTCTGGTTATCTTGTGACCAGAC 1431
Query 1413 GAGCAAGCCATTATTATTGTCAGCTTGAGATTT-CTGTCTGCGGCTCTCtttttttAAGA 1471
||||||||||||||| | |||||||||||||| | |||| ||||||||||||| | ||
Sbjct 1432 GAGCAAGCCATTATT-TA-TCAGCTTGAGATTTTC-GTCTACGGCTCTCTTTTTAT--GA 1486
Query 1472 GTTTTT-AGTTTGGGGCCTTTTCTTAATAAAAAGAGATGAAACTCTGATT 1520
|||||| ||||||| ||||||| ||||||| |||||||||||||||||||
Sbjct 1487 GTTTTTTAGTTTGGAGCCTTTTTTTAATAATAAGAGATGAAACTCTGATT 1536
> AT3G12780.1 | Symbols: PGK1 | phosphoglycerate kinase 1 | chr3:4060971-4063306
REVERSE LENGTH=1768
Length=1768
Score = 632 bits (342), Expect = 3e-180
Identities = 918/1193 (77%), Gaps = 52/1193 (4%)
Strand=Plus/Plus
Query 163 AGCGGATCTGAAAGGAAAG-AGTGTGTTCGTGAGGGTTGATCTCAACGTTCCTTTGGATG 221
||| ||| |||| || ||| || || |||||||| | ||||||||| || ||| | ||||
Sbjct 427 AGCTGATTTGAAGGGGAAGAAG-GTTTTCGTGAGAGCTGATCTCAATGTACCTCTCGATG 485
Query 222 ATAACTCTA-AC-ATCACCGATGACACCAGGATTCGTGCCGCTGTTCCCACCATCAAGTA 279
|||| || | || ||||| || || ||||| || |||||||| |||| || ||||||||
Sbjct 486 ATAA-TC-AGACTATCACTGACGATACCAGAATCCGTGCCGCCATTCCAACGATCAAGTA 543
Query 280 CTTGATGGGTAACGGAT-CTAGGGTTGTTCTCTGCAGTCACT-TGGGCCGCCCAAAAGGT 337
||||| | || || | ||| ||| | |||| || ||| | |||| | ||||| ||
Sbjct 544 TTTGATTGAAAATGG-TGCTAAAGTTATCCTCTCCACTCA-TCTGGGAAGGCCAAAGGGA 601
Query 338 GTTACTCCTAAGTACAGCTTAAAGCCTCTTGTGCCGAGATTGTCTGAACTTCTTGGTGTT 397
|| || || |||| || || |||||||| || || | || || ||||||||| ||
Sbjct 602 GTCACCCCAAAGTTTAGTTTGGCTCCTCTTGTCCCTAGGCTCTCCGAGCTTCTTGGTATT 661
Query 398 GAGGT--TGTAATGGCAAATGACTCTATTGG-TGAGGAAGTCCAGAAG-TTGGTTGCAGG 453
||||| | || || |||| | |||||| | ||||| | ||| ||||| ||
Sbjct 662 GAGGTCACG-AA-AGCTGATGATTGTATTGGCCCA-GAAGTGGA-AAGCTTGGTGGCTTC 717
Query 454 ACTACCTGAAGGTGGTGTTTTGC-TCTTGGAGAATGTGAGGTTCTACGCTGAAGAAGAGA 512
|||||||||||||| ||||||| |||| ||||| || ||||| ||| || |||||||
Sbjct 718 TCTACCTGAAGGTGGAGTTTTGCTTCTT-GAGAACGTCAGGTTTTACAAGGAGGAAGAGA 776
Query 513 AGAACGATCCTGAATTTGCAAAGAAGCTTGCTGCTCTTGCCGATGTCTATGTTAATGATG 572
||||||||||||| ||||| |||||||||||| |||| || || | ||||| |||||||
Sbjct 777 AGAACGATCCTGAGTTTGCTAAGAAGCTTGCTTCTCTAGCTGACCTTTATGTCAATGATG 836
Query 573 CCTTCGGAACTGCTCACAGAGCTCATGCTTCCACTGAGGGTGTTGCCAAATACTTGAAGC 632
| ||||||||||||||||||||||||||||| || || || || | || | ||||||||
Sbjct 837 CTTTCGGAACTGCTCACAGAGCTCATGCTTCTACCGAAGGAGTCACTAAGTTCTTGAAGC 896
Query 633 CTTCAGTTGCTGGTTTCCTCATGCAAAAGGAACTTGATTACCTTGTTGGAGCTGTGGCAA 692
||||||||||||||||||| ||||||||||||| || ||||| ||||| ||||| |||
Sbjct 897 CTTCAGTTGCTGGTTTCCTTTTGCAAAAGGAACTGGACTACCTAGTTGGTGCTGTTTCAA 956
Query 693 ACCCCAAGA-AGCCTTTTGCTGCCATTGTTGGAGGCTC-AAAGGTTTCAACAAAGATTGG 750
|||| |||| | || ||||| ||||| || || || || |||| | ||| | ||||||||
Sbjct 957 ACCCAAAGAGA-CCATTTGCAGCCATAGTGGGTGGTTCCAAAG-TCTCATCCAAGATTGG 1014
Query 751 TGTCATTGAGTCACT-CTTGTCCACAGT-TGACATCCTCCTGCTCGGTGGAGGTATGATT 808
|| ||||| || || || | | ||| ||| || || || || ||||| || |||||
Sbjct 1015 AGTTATTGAATCGCTTCTGGAG-A-AGTGTGATATTCTTCTTCTTGGTGGTGGAATGATC 1072
Query 809 TTCACTTTCTACAAGGCACAAGGACTCTCAGTCGGATCTTCCCTTGTGGAGGAGGACAAG 868
||||| |||||||||||||| || || ||||| || || |||||||| || || ||||||
Sbjct 1073 TTCACATTCTACAAGGCACAGGGTCTTTCAGTTGGTTCGTCCCTTGTTGAAGAAGACAAG 1132
Query 869 CTTGACTTGGCAA-AGTCACTCATGGA-AAAGGCAAAGGCCAAAGGTGTCTCTCTCTTGC 926
||||| ||||| | || |||| | | |||| | ||||||||||| |||||||| |||
Sbjct 1133 CTTGAATTGGCTACAGA-ACTCCTTGCCAAAG-CTAAGGCCAAAGGAGTCTCTCTTTTGT 1190
Query 927 TCCCAACCGATGTGGTTA-TTGCTGACAAGTTTGCTCCAGATGCTAACAGCAAGATAGTG 985
| ||||| ||||| || | ||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 1191 TGCCAACAGATGTTGT-AGTTGCTGACAAGTTTGCTCCTGATGCCAACAGCAAGATTGTG 1249
Query 986 CCAGCCA-CTGCCATCCCAG-ATGGCTGGATGGGTCTAGATATTGGTCCAGATTCCATCA 1043
|| || | | | ||| || | || |||||||| || || ||||||||||| || ||||
Sbjct 1250 CCTGC-ATCAGGCATTG-AGGACGGATGGATGGGACTGGACATTGGTCCAGACTCTATCA 1307
Query 1044 AGACATTCAGCGAAGCTCTGGACACAAC-CAAAACCA-TCATCTGGAATGGTCCCATGGG 1101
| || |||| |||||||||||||||||| |||| | | |||| |||||||| || |||||
Sbjct 1308 AAACTTTCAACGAAGCTCTGGACACAACACAAA-C-AGTCATTTGGAATGGACCTATGGG 1365
Query 1102 TGTTTTTGA-ATTCGATAAGTTTGCAGCTGGAACTGAGGCCG-TAGCAAAGCAGCTTGCA 1159
||||| || || || |||||||| |||||||| ||||| | |||| || | || |||
Sbjct 1366 AGTTTTCGAGATG-GAAAAGTTTGCGGCTGGAACAGAGGC-GATAGCGAATAAACTAGCA 1423
Query 1160 GAACTAAGCGGAAAGGGAGTAACCACAATCATTGGAGGGGGTGACTCTGTTGCTGCTGTC 1219
|| ||||| | ||| ||||| || || || || ||||| || ||||| || ||||| ||
Sbjct 1424 GAGCTAAGTGAAAAAGGAGTGACAACGATAATAGGAGGAGGAGACTCAGTGGCTGCAGTG 1483
Query 1220 GAGAAGGTCGGTTTGGCTG-ACAAGATGAGTCACATCTCTACCGGAGGTGGTGCTAGTTT 1278
||||| || || | || | | |||||||||||||| || || ||||| || || ||
Sbjct 1484 GAGAAAGTAGGAGTAGCAGGAGTC-ATGAGTCACATCTCCACTGGTGGTGGAGCCAGCTT 1542
Query 1279 GGAGCTTCTTG-AGGGGAA-GCCACTTCCAGGAGTCCTCGCTCTTGATGAAGC 1329
|||||| ||| | || || | |||||| || || |||| |||||||||||
Sbjct 1543 GGAGCTG-TTGGAAGGAAAAGT-ACTTCCCGGTGTGATCGCCCTTGATGAAGC 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76254627855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5