BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477170
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80760.1 | Symbols: NIP6;1, NIP6, NLM7 | NOD26-like intrinsi... 1581 0.0
> AT1G80760.1 | Symbols: NIP6;1, NIP6, NLM7 | NOD26-like intrinsic
protein 6;1 | chr1:30350539-30352208 REVERSE LENGTH=1212
Length=1212
Score = 1581 bits (856), Expect = 0.0
Identities = 950/995 (95%), Gaps = 7/995 (1%)
Strand=Plus/Plus
Query 77 TAAAAACAATCATAGCAAAAACATATATCCTCAAATTAAGATCT-CAtctc-tctctctc 134
||||||||||||||||||||||||||||||||||||| | || | ||||| ||| ||||
Sbjct 127 TAAAAACAATCATAGCAAAAACATATATCCTCAAATT-A-AT-TAGATCTCATCTATCTC 183
Query 135 tAGCCTCGATATGGATCATGAGGAAATTCCATCAATGCCCTCAACGCCGGCTACAACCCC 194
|| |||||| ||||||||||||||||||||||| | ||||||||||||||| ||||||||
Sbjct 184 TACCCTCGACATGGATCATGAGGAAATTCCATCCACGCCCTCAACGCCGGCGACAACCCC 243
Query 195 GGGGACACCAGGAGCACCGCTCTTTGGAGGATTCGAAGGGAAGAGGAATGGACACAATGG 254
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 GGGGACTCCAGGAGCGCCGCTCTTTGGAGGATTCGAAGGGAAGAGGAATGGACACAATGG 303
Query 255 TAAATACACACCAAAGTCACTTCTAAAAAGCTGCAAATGTTTCAGTGTTGACAATGAATG 314
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 304 TAGATACACACCAAAGTCACTTCTCAAAAGCTGCAAATGTTTCAGTGTTGACAATGAATG 363
Query 315 GGCTCTTGAAGATGGAAGACTCCCTCCGGTCTCTTGCTCTCTCCCTCCCCCTAATGTCTC 374
||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||
Sbjct 364 GGCTCTTGAAGATGGAAGACTCCCTCCGGTCACTTGCTCTCTCCCTCCCCCTAACGTTTC 423
Query 375 CCTCTACCGCAAGTTGGGAGCAGAGTTTGTTGGGACATTGATCCTAATATTCGCTGGAAC 434
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 424 CCTCTACCGCAAGTTGGGAGCAGAGTTTGTTGGGACATTGATCCTGATATTCGCCGGAAC 483
Query 435 AGCGACGGCGATCGTGAACCAGAAGACAGATGGAGCTGAGACGCTTATTGGTTGCGCCGC 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 AGCGACGGCGATCGTGAACCAGAAGACAGATGGAGCTGAGACGCTTATTGGTTGCGCCGC 543
Query 495 GTCGGCTGGTTTGGCGGTTATGATCGTTATTTTATCGACTGGTCACATATCCGGGGCGCA 554
||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||
Sbjct 544 CTCGGCTGGTTTGGCGGTTATGATCGTTATATTATCGACCGGTCACATCTCCGGGGCACA 603
Query 555 TCTCAATCCGGCTGTCACTATTGCCTTTGCTGCTCTCAAACACTTCCCTTGGAAACACGT 614
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TCTCAATCCGGCTGTAACCATTGCCTTTGCTGCTCTCAAACACTTCCCTTGGAAACACGT 663
Query 615 GCCGGTGTACATCGGAGCTCAGGTGATGGCCTCCGTGTGTGCGGCGTTTGCACTGAAAGC 674
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 664 GCCGGTGTATATCGGAGCTCAGGTGATGGCCTCCGTGAGTGCGGCGTTTGCACTGAAAGC 723
Query 675 AGTGTTTGAACCAACGATGAGCGGTGGCGTGACGGTGCCGACGGTGGGTCTAAGCCAAGC 734
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 724 AGTGTTTGAACCAACGATGAGCGGTGGCGTGACGGTGCCGACGGTGGGTCTCAGCCAAG- 782
Query 735 CTTT-GCCTTGGAGTTCATTATCAGCTTCAACCTCATGTTCGTTGTCACAGCCGTAGCCA 793
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 CTTTCGCCTTGGAATTCATTATCAGCTTCAACCTCATGTTCGTTGTCACAGCCGTAGCCA 842
Query 794 CCGACACGAGAGCTGTGGGAGAGTTGGCGGGAATTGCGGTAGGAGCAACGGTCATGCTTA 853
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 843 CCGACACGAGAGCTGTGGGAGAGTTGGCGGGAATTGCCGTAGGAGCAACGGTCATGCTTA 902
Query 854 ACATACTCATAGCTGGACCAGCAACTTCTGCTTCGATGAATCCTGTAAGAACACTAGGTC 913
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 903 ACATACTTATAGCTGGACCTGCAACTTCTGCTTCGATGAACCCTGTAAGAACACTGGGTC 962
Query 914 CAGCCATTGCAGCAAACAATTACAGAGCTATTTGGGTTTACCTCACTGCCCCGATTCTTG 973
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 963 CAGCCATTGCAGCAAACAATTACAGAGCTATTTGGGTTTACCTCACTGCCCCCATTCTTG 1022
Query 974 GCGCGTTAATCGGAGCAGGAACATACACGATTGTGAAGTTGCCAGAGGAAGATGAAGCAC 1033
| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 1023 GAGCGTTAATCGGAGCAGGTACATACACAATTGTCAAGTTGCCAGAGGAAGATGAAGCAC 1082
Query 1034 CCAAAGAGAGGAGGAGCTTCAGAAGATGAAAGACA 1068
||||||||||||||||||||||||||||||| |||
Sbjct 1083 CCAAAGAGAGGAGGAGCTTCAGAAGATGAAAAACA 1117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53363179335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5