BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477201
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80480.1 | Symbols: PTAC17 | plastid transcriptionally activ... 2021 0.0
AT1G15730.1 | Symbols: | Cobalamin biosynthesis CobW-like prot... 987 0.0
> AT1G80480.1 | Symbols: PTAC17 | plastid transcriptionally active
17 | chr1:30258076-30260679 REVERSE LENGTH=1640
Length=1640
Score = 2021 bits (1094), Expect = 0.0
Identities = 1280/1366 (94%), Gaps = 27/1366 (2%)
Strand=Plus/Plus
Query 21 ACTAAAATGGCGACGCTATCAAAACTAGAGATTGCCT-CGACC-T--TC-C--T---CGC 70
|||||||||||||||||||||| ||||||||||| || ||||| | || | | |||
Sbjct 104 ACTAAAATGGCGACGCTATCAACACTAGAGATTG-CTACGACCTTCCTCTCTTTCACCGC 162
Query 71 TCATCGTTCCGCTGCCGCCTTTAACTATCGCTCTTCTTCTGCCGCCGTCTCTGTTTTCTC 130
|| ||||||| |||||||||| |||||||||| |||||||||||||||||||||| ||||
Sbjct 163 TCCTCGTTCCTCTGCCGCCTTCAACTATCGCTTTTCTTCTGCCGCCGTCTCTGTTCTCTC 222
Query 131 CAGGCCCAGAGCTACCACCGTTTCCGTCAGAACTACGCCGTCTTTATTCTATTCCCCGGT 190
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 223 CAGGCCCAGAGCTACCACCGTTTCCGTCAGAACGACGCCGTCTTTCTTCTATTCCCCGGT 282
Query 191 GGTTCGCCGTCGAAGATTCTCATCTGTCTCTGTCTCAGCTACGCAGACAGAGGATTCCGA 250
||| ||||||| |||||||||||||||||| | ||||||||||||||| || ||||| ||
Sbjct 283 GGTCCGCCGTCAAAGATTCTCATCTGTCTCCGCCTCAGCTACGCAGACTGAAGATTCTGA 342
Query 251 TGTTACCACTAAGATCCCGGCAGATAACCGGATTCCGGCTACTATTATCACGGGGTTTTT 310
||| ||||||||||| ||| ||||||||||||||||||||||||||||||| || |||||
Sbjct 343 TGTCACCACTAAGATTCCGCCAGATAACCGGATTCCGGCTACTATTATCACCGGTTTTTT 402
Query 311 GGGCTCCGGCAAGACAACATTGCTGAATCATATACTGACCAGAGATCATGGGAAGCGAAT 370
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 GGGCTCTGGCAAGACAACATTGCTGAATCATATACTGACCAGAGATCATGGGAAGCGAAT 462
Query 371 AGCCGTCATCGAGAATGAGTTTGGTGAAGTTGACATTGATGGCTCACTTGTTGCTTCTAA 430
|||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 463 AGCCGTGATTGAGAATGAGTTTGGTGAAGTTGACATTGATGGGTCACTTGTTGCTTCTAA 522
Query 431 ATCTATTGGAGCAGAGGATATTGTTATGCTCAACAATGGCTGCCTCTGTTGCACTGTTAG 490
|||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 523 ATCTATTGGAGCTGAGGATATTGTGATGCTCAACAATGGCTGCCTTTGTTGCACTGTTAG 582
Query 491 GGGTGATCTTGTCAGGATGATTGGAGAATTAGTCAATACCAAGAAAGGAAAGTTCGACCA 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 583 GGGTGATCTTGTCAGGATGATTGGAGAATTAGTCAATACCAAGAAAGGAAAGTTCGATCA 642
Query 551 TATTGTCATTGAGACTACAGGATTGGCAAACCCGGCACCGATTATCCAAACCTTTTATGC 610
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 TATAGTCATAGAGACTACAGGATTGGCAAACCCGGCACCGATTATCCAAACCTTTTATGC 702
Query 611 CGAGGAAGAAATTTTCAATCATGTCAAACTGGATGGCGTTGTTACTCTAGTTGATGCTAA 670
||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct 703 CGAGGAAGAAATTTTCAATGATGTCAAACTGGACGGTGTTGTTACTCTAGTTGATGCTAA 762
Query 671 GCATGCTCGTTTGCATCTAGATGAGGTCAAACCC-ACGGGTGTTGTCAATGAGGCTGTTG 729
||||||||||||||||||||| |||||||||||| | || ||||||||||||||||||||
Sbjct 763 GCATGCTCGTTTGCATCTAGACGAGGTCAAACCCGAAGG-TGTTGTCAATGAGGCTGTTG 821
Query 730 AACAAATAGCTTATGCAGATCGTATCATAGTCAACAAGACTGATCTTGTTGGTGAGGCGG 789
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 822 AACAAATAGCTTATGCAGATCGTATCATAGTTAACAAGACTGATCTTGTTGGTGAGGCGG 881
Query 790 AATTAGGTTCGGTGGTGCAACGCATAAAGACAATAAACAGCATGGCTCAGATGACGCGGA 849
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 882 AATTAGGTTCGGTGGTACAACGCATAAAGACAATAAACAGCATGGCTCAGATGACGCGAA 941
Query 850 CAAAGTACGGAAACGTTGACTTGGATTATGTTCTTGGAATTGGAGGTTTTGATCTAGAGA 909
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 942 CAAAGTACGGAAATGTTGACTTAGATTATGTTCTTGGAATTGGAGGTTTTGATCTAGAGA 1001
Query 910 GAATTGAAAGCTCTGTGAATGAAGACGATAAGGGAGATcaccatgatcacgaccatga-c 968
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1002 GAATCGAAAGCTCTGTGAATGAAGATGATAAGGGAGATCACCATGATCACGACCATGATC 1061
Query 969 --ca-c--ga-c-ca----tgaccacgaccaccatcaccacgatgaACATGAGCATCA-C 1016
|| | || | || |||||||||||| ||||||||||||| |||||| ||||| |
Sbjct 1062 ATCATCATGATCACAACCATGACCACGACCATCATCACCACGATGGACATGATCATCATC 1121
Query 1017 AATCATTCTCACGATCACACCCATGATCCTGGTGTTTCTTCAGTCAGTATAGTTTGCCAA 1076
| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1122 A-TCATTCTCATGATCACACCCATGATCCCGGTGTTTCTTCAGTCAGTATAGTTTGCGAA 1180
Query 1077 GGAAGCTTAGACCTTGAGAAGGCAAACATGTGGCTCGGGACGTTACTGATGGAACGCAGT 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 GGAAGCTTAGACCTTGAGAAGGCAAACATGTGGCTCGGGACGTTACTGATGGAACGCAGT 1240
Query 1137 GAAGACATCTACAGAATGAAAGGTCTCCTCTCGGTTCACACCATGGAGGAGAGATTTGTG 1196
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1241 GAAGACATCTACAGAATGAAAGGTCTCCTCTCGGTCCACACCATGGAGGAGAGATTCGTG 1300
Query 1197 TTTCAAGGAGTCCATGACATATTTCAAGGATCACCAGACCGGTTATGGGGAAGAAACGAG 1256
||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||
Sbjct 1301 TTTCAAGGAGTCCATGACATATTTCAAGGATCACCAGACAGGTTATGGGGAAGAGAGGAG 1360
Query 1257 GAGAGAGTGAACAAGATCGTCTTCATTGGTAAGAATTTGAACAGGGAGGAGTTGGAGAAG 1316
||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1361 GAGAGAGTGAATAAGATCGTTTTCATTGGTAAGAATTTGAACAGGGAGGAGTTAGAGAAG 1420
Query 1317 GGTTTTAAAGCTTGCTTGATTTGATATTTGCACTAGGTGTATGTAT 1362
||||||||||||||||||||||||| |||||||||| | |||||||
Sbjct 1421 GGTTTTAAAGCTTGCTTGATTTGATTTTTGCACTAGCTCTATGTAT 1466
> AT1G15730.1 | Symbols: | Cobalamin biosynthesis CobW-like protein
| chr1:5407401-5409987 REVERSE LENGTH=1531
Length=1531
Score = 987 bits (534), Expect = 0.0
Identities = 930/1119 (83%), Gaps = 35/1119 (3%)
Strand=Plus/Plus
Query 248 CGATGTTACCACTAAGATCCCGGCAGATAACCGGATTCCGGCTACTATTATCACGGGGTT 307
||||||| ||| | |||| | | || || || |||||||| ||||| ||||| |||||
Sbjct 290 CGATGTTGCCAGTGAGATTTTGCCCGACAATCGAATTCCGGCCACTATAATCACCGGGTT 349
Query 308 TTTGGGCTCCGGCAAGACAACATTGCTGAATCATATACTGACCAGAGATCATGGGAAGCG 367
||||||| || |||||||||||||| || |||||| |||| ||||||||||||||||
Sbjct 350 CCTGGGCTCTGGTAAGACAACATTGCTAAACCATATATTGACGGGAGATCATGGGAAGCG 409
Query 368 AATAGCCGTCATCGAGAATGAGTTTGGTGAAGTTGACATTGATGGCTCACTTGTTGCTTC 427
|||||||| || ||||| |||||||||||||| ||||||||||| |||||||| || |
Sbjct 410 CATAGCCGTGATTGAGAACGAGTTTGGTGAAGTCGACATTGATGGATCACTTGTGGCAGC 469
Query 428 T-AAATCTATTGGAGCAGAGGATATTGTTATGCTCAACAATGGCTGCCTCTGTTGCACTG 486
| ||| || ||||| |||||||| | ||||| ||||||||||| || ||||| ||||
Sbjct 470 TCAAA-CTGCGGGAGCGGAGGATATAATGATGCTTAACAATGGCTGTCTGTGTTGTACTG 528
Query 487 TTAGGGGTGATCTTGTCAGGATGATTGGAGAATTAGTCAATACCAAGAAAGGAAAGTTCG 546
|||||||||||||||| ||||||||| ||| | ||| | ||||||||||||| |||||
Sbjct 529 TTAGGGGTGATCTTGTGAGGATGATTTCTGAAATGGTCCAGACCAAGAAAGGAAGGTTCG 588
Query 547 ACCATATTGTCATTGAGACTACAGGATTGGCAAACCCGGCACCGATTATCCAAACCTTT- 605
||||||| || |||||||| ||||||||||| ||||| || |||||||| |||| ||||
Sbjct 589 ACCATATCGTTATTGAGACGACAGGATTGGCTAACCCTGCTCCGATTATTCAAA-CTTTC 647
Query 606 TATGCCGAGGAAGAAATTTTCAATCATGTCAAACTGGATGGCGTTGTTACTCTAGTTGAT 665
||||| ||||| |||||||||||| ||||||| |||||||| ||||| ||||| ||||||
Sbjct 648 TATGCTGAGGATGAAATTTTCAATGATGTCAAGCTGGATGGGGTTGTCACTCTGGTTGAT 707
Query 666 GCTAAGCATGCTCGTTTGCATCTAGATGAGGTCAAACCC-ACGGGTGTTGTCAATGAGGC 724
||||| |||||||||||||||||||||||||||||||| | || | | |||||||||||
Sbjct 708 GCTAAACATGCTCGTTTGCATCTAGATGAGGTCAAACCTGAAGGCTAT-GTCAATGAGGC 766
Query 725 TGTTGAACAAATAGCTTATGCAGATCGTATCATAGTCAACAAGACTGATCTTGTTGGTGA 784
||||||||||||||||| || ||||||||||| || |||||||||||||||||||||||
Sbjct 767 GGTTGAACAAATAGCTTACGCGGATCGTATCATTGTTAACAAGACTGATCTTGTTGGTGA 826
Query 785 GGCGGAATTAGGTTCGGTGGTGCAACGCATAAAGACAATAAACAGCATGGCTCAGATGAC 844
| | ||| ||| ||| ||| |||| || |||||||| ||||||||||||||||| ||||
Sbjct 827 GCCAGAACTAGCTTCAGTGATGCAGCGGATAAAGACCATAAACAGCATGGCTCACATGAA 886
Query 845 GCGGACAAAGTACGGAAACGTTGACTTGGATTATGTTCTTGGAATTGGAGGTTTTGATCT 904
|||||||||||| || || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 887 GCGGACAAAGTATGGGAAGGTTGACTTGGATTATGTTCTTGGAATTGGAGGGTTTGATCT 946
Query 905 AGAGAGAATTGAAAGCTCTGTGAATGAAGACGATAAGGGAGATcaccatgatcacgac-- 962
||| |||||||||||||||||||||||||| || || | ||||| | | | ||| ||
Sbjct 947 AGAAAGAATTGAAAGCTCTGTGAATGAAGAAGAGAAAGAAGATCGCGAGGGTCATGATGA 1006
Query 963 -catgaccacgaccatgac--c-acgaccaccatcacc-a-cgatgaACATGAGCAT--- 1013
||| |||| | |||||| | | || ||||| || | | |||| |||||||||
Sbjct 1007 TCATCACCATGGTCATGACTGCCATGATCACCA-CAATGAGC-ATGAGCATGAGCATGAA 1064
Query 1014 CAC-A--ATCA---TTCTCACGATCACACCCATGATCCTGGTGTTTCTTCAGTCAGTATA 1067
||| | |||| |||||| |||||||||||||| ||||||||| |||||||||||||
Sbjct 1065 CACGAGCATCACCATTCTCATGATCACACCCATGACCCTGGTGTTGGTTCAGTCAGTATA 1124
Query 1068 GTTTGCCAAGGA-AGCTTAGACCTTGAGAAGGCAAACATGTGGCTCGGGACGTTACTG-A 1125
|||||| ||||| | ||||||||| |||||||| ||||||||||| ||| || || || |
Sbjct 1125 GTTTGCGAAGGAGA-CTTAGACCTCGAGAAGGCTAACATGTGGCTTGGGGCGCTATTGTA 1183
Query 1126 TGGAACGCAGTGAAGACATCTACAGAATGAAAGGTCTCCTCTCGGTTCAC-ACCATGGAG 1184
|||| ||||| || |||||||||||||||||| ||||||| || || || |||||
Sbjct 1184 CC-AACGTAGTGAGGATATCTACAGAATGAAAGGTATCCTCTCCGTACAAGAC-ATGGAC 1241
Query 1185 GAGAGATTTGTGTTTCAAGGAGTCCATGACATATTTCAAGGATCACCAGACCGGTTATGG 1244
|||||||| |||||||| ||||| ||||| |||||| |||||||||| ||||||||||||
Sbjct 1242 GAGAGATTCGTGTTTCAGGGAGTTCATGAAATATTTGAAGGATCACCTGACCGGTTATGG 1301
Query 1245 GGAAGAA-ACGAGGAGA-GAGTGAACAAGATCGTCTTCATTGGTAAGAATTTGAACAGGG 1302
||| || | || | | || |||||||| || ||||| || |||||||||||| |||
Sbjct 1302 AGAA-AAGATGAA-ACAAGAACCAACAAGATTGTTTTCATCGGCAAGAATTTGAACCGGG 1359
Query 1303 AGGAGTTGGAGAAGGGTTTTAAAGCTTGCTTGATTTGAT 1341
||||||| |||| |||||| | |||||||||||||||||
Sbjct 1360 AGGAGTTAGAGATGGGTTTCAGAGCTTGCTTGATTTGAT 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67067928120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5