BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477208
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80440.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1511 0.0
> AT1G80440.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:30241607-30243071 FORWARD LENGTH=1465
Length=1465
Score = 1511 bits (818), Expect = 0.0
Identities = 1002/1088 (92%), Gaps = 23/1088 (2%)
Strand=Plus/Plus
Query 42 ATGGAACTTATCCCCAATCTTCCCGACGACGTTGCTCGCGAGTGTCTCCTTCGCGCCTCC 101
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 157 ATGGAACTTATCCCCAATCTTCCCGACGACGTTGCTCGCGAGTGTCTCCTTCGCTCCTCC 216
Query 102 TACAAACAGTTCCCTGTCATCGCCTCCGTTTGCAGAGGCTGGAACCGTGAAGTCTCTCTC 161
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 217 TACCAACAGTTCCCTGTCATCGCCTCCGTTTGCAGAGCCTGGAACCGTGAAGTCTCTCTC 276
Query 162 TCTGACTTTTTACATCAGCGAAAAGCTTCACGCCATAGCCAAGAGCTTCTTATTCTCTCA 221
||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 277 TCTCAGTTTTTACATCAGCGAAAAGCTTCACGCCATAGCCAAGAGCTTCTTATTCTGTCT 336
Query 222 CAGGCTCGTGTCGAAGACTCCGCTGGATCCGGAAATATTTTCGCTACGCCTGAATACCGG 281
|||||||||||| ||| |||||||||||||||| || ||||||||||||||||||||
Sbjct 337 CAGGCTCGTGTC---GACCCCGCTGGATCCGGAAAGATCATCGCTACGCCTGAATACCGG 393
Query 282 GTCTCTGTTCTCGAATCCGGGTCGGGTCTTTGGACGGAGCTTCCTCCGATTCCTGGTCAA 341
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 ATCTCTGTTCTCGAATCCGGGTCGGGTCTTTGGACGGAGCTTCCTCCGATTCCTGGTCAA 453
Query 342 ACCAAAGGACTCCCTCTGTTCTGCAGATTGGTTTCTGTCGGATCCGATCTTATTGTCTTG 401
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 454 ACCAAAGGACTTCCTCTGTTCTGCAGATTGGTTTCCGTTGGATCCGATCTTATTGTCTTG 513
Query 402 GGTGGCCTTGACCCGGTTACGTGGCAGGCCTC-TGATTCGGTCTTCGTCTTCAGTTTCCT 460
||||| ||||||||| |||||||||||||| | ||||||||| |||||||||||||| ||
Sbjct 514 GGTGGGCTTGACCCGATTACGTGGCAGGCC-CATGATTCGGTATTCGTCTTCAGTTTTCT 572
Query 461 CACTTCCAAATGGCGCGTGGGAGCAACCATGCCAGGTGGACGGAGATCCTTCTTCGGATG 520
||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||
Sbjct 573 CACTTCCAAATGGCGCGTGGGGGCAACCATGCCAGGTGTACGGAGGTCCTTCTTCGGATG 632
Query 521 CGCTTCGGATTCGGATCGGACGGTGTTGGTTGCGGGTGGACACGACGAAGAGAAATGTGC 580
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 633 CGCTTCGGATTCGGATCGGACGGTGCTGGTTGCGGGTGGACACAACGAAGAGAAATGTGC 692
Query 581 GCTGACGTCAGCAATAGTGTATGATGTGGCAGAAGACAAGTGGACGTTTTTGCCGGATAT 640
||| |||||||| || |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 693 GCTTACGTCAGCTATGGTGTATGACGTGTCAGAAGACAAGTGGACGTTTTTGCCGGATAT 752
Query 641 GGCGCGGGAACGAGACGAGTGCAAAGCGATATTCCACGCTGGCAGATTCCGGGTCATCGG 700
|||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||
Sbjct 753 GGCGCGGGAACGAGACGAGTGCAAAGCGGTATTCCATGCTGGCAGATTCCACGTCATCGG 812
Query 701 TGGATATGCCACTGAGGAACAGGGGCAGTTTAGTAAAACCGCTGAATCGTTCGATGTGTC 760
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 813 TGGATATGCCACTGAGGAACAGGGGCAGTTTAGTAAAACAGCCGAATCGTTCGATGTGTC 872
Query 761 TACGTGGCAATGGGGTCCACTTACGGATGACTTCCTCGACGACACCG-C--TAGC-T--- 813
||||||| | ||||||||||||||||| ||||||||||||||||||| | || | |
Sbjct 873 TACGTGGGAGTGGGGTCCACTTACGGAGGACTTCCTCGACGACACCGGCGATACCGTTAG 932
Query 814 C--TCCGATATGCGCCGCCGGTGAAAACGGCGATTTGTACTCGTGCTGGCGTGGCGATGT 871
| ||||| |||| |||||||| || ||||||||| |||||||| ||||||||||
Sbjct 933 CCCTCCGACCTGCGTCGCCGGTG-----GG-GATTTGTACGCGTGCTGGGGTGGCGATGT 986
Query 872 GATGATGTTTTTAAATGACACGTGGCAGAAGGTGGGCCAGATCCCTGCTGATGTGTACAA 931
|||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 987 GATGATGTTTCTAAATGACAAGTGGCAAAAGGTGGGCCAGATCCCTGCTGATGTGTACAA 1046
Query 932 CGTGACTTACGTGGTGGCAGCGAGGCCGGGGAAGCTGATAGTGATCGGCAACGGCAAGGC 991
|| |||||||| | || | ||||| |||| |||||| |||||||||||||| |||||
Sbjct 1047 TGTTACTTACGTAGCGGT-G--AGGCCCGGGATGCTGATTGTGATCGGCAACGGGAAGGC 1103
Query 992 ATTGGCTGGATACGGTGAAGCCACCGTAGGGTATACATGTGATTTAAGTAGCGCACGATG 1051
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1104 GTTGGCTGGATACGGTGAAGCCACCGTAGGGTATATATGTGATTTAAGTAGCTCACGATG 1163
Query 1052 GGTAAAATTGGAAACACATGTTGGTCATGTTCAAGCTGGTTGCTTCTTGGAGGTCTAATG 1111
|||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||
Sbjct 1164 GGTAAAATTGGAAACACACGGTGGTCATGTTCAAGCTGGCTGCTTCTTGGAGGTCTAATG 1223
Query 1112 TAAAACCT 1119
|||||||
Sbjct 1224 GAAAACCT 1231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5