BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477280 Length=1647 Score E Sequences producing significant alignments: (Bits) Value AT1G79860.1 | Symbols: ATROPGEF12, ROPGEF12, MEE64 | RHO guanyl... 2608 0.0 > AT1G79860.1 | Symbols: ATROPGEF12, ROPGEF12, MEE64 | RHO guanyl-nucleotide exchange factor 12 | chr1:30042092-30044175 REVERSE LENGTH=1711 Length=1711 Score = 2608 bits (1412), Expect = 0.0 Identities = 1560/1632 (96%), Gaps = 8/1632 (0%) Strand=Plus/Plus Query 1 TCTCAAGAGAGGCCCTTTTGAT-C-ctctctatctctctctctcctctctaattctctct 58 ||||||||||||||| |||||| | |||||| |||||||||||||||||||||||||| | Sbjct 5 TCTCAAGAGAGGCCCATTTGATCCTCTCTCTTTCTCTCTCTCTCCTCTCTAATTCTCTAT 64 Query 59 TGCCATCAAGAAACCAGGAATGGTTCGTGCCTCGGAACAAGAACAGGAAAGCTATAGGAG 118 ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 65 TGCCATCAAGAGACCAGGAATGGTTCGTGCTTCGGAACAAGAACAGGAAACCTATAGGAG 124 Query 119 CAGGCTCTTCAATTTCAAATGGAGGAACAACGACAACAATAGTGCTACGAGACACAACAA 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125 CAGGCTCTTCAATTTCAAATGGAGGAACAACGACAACAATAGTGCTACGAGACACAACAA 184 Query 179 GAGTCTCAGCGTCGAGACCGGTTTAGATGAGGCTGCCACCGGATCTCATGGCGCTGAACC 238 ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 185 GAGTCTCAGCGTCGAGACCGGTTTAGATGAGGCTGCCACCGGATCCCATGACGCTGAACC 244 Query 239 GTTGACCATAATTCATCCTAGTCAGGGTCCCCCACTTTCAAGATCAGCTGCGGATGAAGC 298 |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 245 ATTGACCATTATTCATCCTAGTCAGGGTCCACCACTTTCAAGATCGGCTGCGGATGAAGC 304 Query 299 AG-CACTGGCCGCCCTTGCCGCCGCACAGGCTAGAGAAAAGCAGCTTTTGGCAGACATGG 357 || | || |||||||| |||||| ||||||||||||||| |||||||||||||||||||| Sbjct 305 AGTC-CTCGCCGCCCTCGCCGCCTCACAGGCTAGAGAAAGGCAGCTTTTGGCAGACATGG 363 Query 358 AGCAGATGAAAGAGCGCTTCTCCAAGCTGTTGCTGGGAGAGGACAATTCCGGTGGAGGCA 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 AGCAGATGAAAGAGCGCTTCTCCAAGCTGTTGCTGGGAGAGGACAATTCCGGTGGAGGCA 423 Query 418 AAGGAGTATCATCTGCTCTCGCCCTTTCAAACGCAATCACAAACCTTGCAGCTTCCGTGT 477 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 424 AAGGAGTATCCTCTGCTCTCGCCCTTTCAAACGCAATCACAAACCTTGCAGCTTCCGTGT 483 Query 478 TCGGAGAGCAACGTCGCTTGGAGCCAATGCCTGCAGAGAGGAGAGCCAGATGGAGAAAAG 537 ||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||| Sbjct 484 TCGGAGAGCAACGGCGCTTGGAGCCAATGCCTGCAGAAAGAAGAGCAAGATGGAGAAAAG 543 Query 538 AGATCGATTGGCTTCTCTCCGTGACCGAGTACGTTGTTGAGTTTGCTCCATCTCAGCaaa 597 |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | Sbjct 544 AGATTGATTGGCTTCTCTCCGTGACCGATTACGTGGTTGAGTTTGCTCCATCTCAGCAGA 603 Query 598 aaaaTAAAGATGGGACCAATATGGAGATAATGACCACACGCCAACGTACTGACCTCCACA 657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 604 AAAATAAAGATGGGACCAATATGGAGATAATGACCACACGCCAACGTACTGACCTCCACA 663 Query 658 TGAATATCCCCGCATTGAAGAAATTGGACGCCATGCTCATCGATTGTCTAGAAAATTTCA 717 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 664 TGAATATCCCCGCATTGAAGAAACTGGACGCCATGCTCATCGATTGTCTAGAAAATTTCA 723 Query 718 AGGACCAAAGCGAGTTCAGCTATGTCTCAAAAGACTCCCCAGACTCAGACGGTAAGAGAA 777 ||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| Sbjct 724 AGGACCAAAGCGAGTTCAGCTATATCTCAAAAGACTCCCCTGACTTAGACGGTAAGAGAA 783 Query 778 ACGACGACAAATGGTGGATTCCGACCGTCAAAGTTGCC-CCAGATGGTCTATCAGAAGCT 836 ||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 784 ACGACGAAAAATGGTGGATTCCGACCGTCAAAGTT-CCACCAGATGGTCTATCAGAAGCT 842 Query 837 TCAAGAAGGTTCTTGCAATACCAGAAAGATTGTGTAAACCAGGTTCTAAAGGCAGCCATG 896 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 843 TCAAGAAGGTTTTTGCAGTACCAGAAAGATTGTGTAAACCAGGTTCTAAAGGCAGCCATG 902 Query 897 GCCATAAACGCACAGGTTTTGTTCGAGATGGAGATACCAGAGAGCTACATCGACTCTCTC 956 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 903 GCCATAAACGCACAGGTTTTGTTCGAGATGGAGATACCTGAGAGCTACATCGACTCTCTC 962 Query 957 CCCAAGAACGGGAGGGCGAGTCTCGGGGATCAGATGTACAAGAATATAACGGTGGACTTC 1016 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 963 CCAAAGAACGGGAGGGCGAGTCTCGGGGATCAGATGTACAAGAATATAACGGTGGACTTC 1022 Query 1017 TTTGACCCGGACCAGTTCCTGAGCAGCATGGACATGTCGTCGGAGCACAAGATCGTCGAC 1076 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1023 TTTGACCCGGACCAGTTCCTGAGCAGCATGGACATGTCGTCGGAGCACAAGATCGTGGAC 1082 Query 1077 CTCAAAAACAGGATCGAGGCATCAATCATTATATGGAAACGCAAAATGGTTTATAAAGAC 1136 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1083 CTCAAAAACAGAATCGAGGCATCAATCATTATATGGAAACGCAAAATGGTTTATAAAGAC 1142 Query 1137 AGCAAATCATCGGCACCATGGGCCTCCGGAGTAAGTCTGGAGAAGCGAGAGGTTTTCGAG 1196 | ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1143 AACAAATCATCGGCACCCTGGGCCTCCGGAGTAAGTCTGGAGAAGCGAGAGGTCTTCGAA 1202 Query 1197 GAGCGAGCTGAGACCATTTTGCTCATTCTCAAGCAAAGATACCCTGGGATATCTCAGTCG 1256 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || Sbjct 1203 GAGCGAGCTGAGACCATTTTGCTCATTCTCAAGCAAAGATACCCCGGGATTTCTCAATCT 1262 Query 1257 GCACTCGACATCAGCAAAATCCAGTTCAACAAGGACGTGGGTCAAGCGGTGCTGGAGAGC 1316 ||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||| Sbjct 1263 TCACTCGACATCAGCAAAATCCAGTTCAACGAGGACGTGGGCCAGGCGGTGCTGGAGAGC 1322 Query 1317 TACTCGAGAATACTGGAGAGCTTGGCGTACACGGTACTGTCGAGAATCGATGACGTTTTA 1376 ||||||||||||||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct 1323 TACTCGAGAATACTGGAAAGCTTGGCCTACACGGTACTTTCCAGAATCGATGACGTTTTA 1382 Query 1377 GAGGCAGATCGAGCGGGGAGCAAGAGGAACACGCCGAT-GGAATCAGAGGACGAGACGCT 1435 ||||||||||||||||||| ||||||||||||||| || |||| ||||||| |||||||| Sbjct 1383 GAGGCAGATCGAGCGGGGAACAAGAGGAACACGCC-ATTGGAAGCAGAGGAAGAGACGCT 1441 Query 1436 GGTTGGGAGCATGACGCTGTCGGATTTCATGGGATGGGACTTCGATCAGGCCGGGAACGC 1495 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1442 GGTTGGGAGCATGACGCTGTCGGATTTCATGGGATGGGACTTCGATCAGGCCGCGAACGC 1501 Query 1496 CGACTTGGAGTCGAAGAGGGATCTATCGGATGATCCGTTGGTGAAGGAGAAGCTAAGCGT 1555 ||| ||||||||||||| ||||||| |||||||||||||| | ||||||||||||||||| Sbjct 1502 CGAATTGGAGTCGAAGAAGGATCTACCGGATGATCCGTTGATAAAGGAGAAGCTAAGCGT 1561 Query 1556 CGTCACGACCAAGAAGACATCATACCTCGAAACCCTAGGCGGCGTCAAGAGTCCAACGGC 1615 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1562 CGTCACGACCAAGAAGACCTCATACCTCGAAACCCTAGGCGGTGTCAAGAGTCCAACGGC 1621 Query 1616 GCGGCATTGATA 1627 ||||||||||| Sbjct 1622 ACGGCATTGATA 1633 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81375083445 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5