BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477281
Length=604
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79850.1 | Symbols: RPS17, CS17, PRPS17 | ribosomal protein ... 933 0.0
AT1G79840.2 | Symbols: GL2 | HD-ZIP IV family of homeobox-leuci... 152 3e-36
> AT1G79850.1 | Symbols: RPS17, CS17, PRPS17 | ribosomal protein
S17 | chr1:30041243-30041952 REVERSE LENGTH=710
Length=710
Score = 933 bits (505), Expect = 0.0
Identities = 575/608 (95%), Gaps = 7/608 (1%)
Strand=Plus/Plus
Query 1 TTCATCGATTCGATTCCAAATCGG-AGGATG---ACGTCGTCCCTCACCTCATCTCTGCA 56
|||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||
Sbjct 3 TTCATCGATTCGATTCCAAATCGGAAGGATGATAACGTCGTCCCTAACCTCATCTCTGCA 62
Query 57 AACTCTCAAGCTTTCGTCTCCGTTCGCCCATGGCTCCACTCCACTCTCATCTCTCTCTAA 116
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 63 AGCTCTCAAGCTTTCGTCTCCGTTCGCCCATGGCTCCACTCCTCTCTCATCTCTCTCTAA 122
Query 117 GCCCAACTCCTTCCCGAACCATAGAATGCCCGCTTTAGTTCCGGTCATCAGAGCGATGAA 176
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 123 GCCCAATTCCTTCCCGAACCACAGAATGCCCGCTTTAGTTCCGGTCATCAGAGCCATGAA 182
Query 177 AACGATGCAGGGGCGCGTGGTGTGCGCAACCAGTGACAAGACTGTGGCGGTGGAGGTGAC 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 AACGATGCAGGGGCGCGTGGTGTGCGCAACCAGTGACAAGACTGTGGCGGTGGAGGTGGT 242
Query 237 AAGACTGGCTCCCCACCCCAAGTACAAGAGGCGCGTGAGGATGAAGAAGAAGTACCAAGC 296
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GAGGCTGGCTCCCCACCCCAAGTACAAGAGGCGCGTGAGGATGAAGAAGAAGTACCAAGC 302
Query 297 TCATGACCCCGATAATCAGTTCAAGGTTGGCGACGTTGTCAGGCTGGAAAAGAGCAGACC 356
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 303 TCACGACCCCGATAATCAGTTCAAGGTTGGCGACGTGGTCAGACTGGAAAAGAGCAGACC 362
Query 357 CATCAGTAAGACTAAATCATTTGTGGCGCTTCCTGTCGTCCCTAGGGCCGCTGGGAAAGC 416
||||||||||||||||||||||||||||||||||||| || | |||||||| |||||||
Sbjct 363 CATCAGTAAGACTAAATCATTTGTGGCGCTTCCTGTCATCGCAAGGGCCGCCAGGAAAGC 422
Query 417 CGAAGCCGGAGCAGGTGACCTCCTTGGCATTCCCTTGGAGTCTCAGCAGCCGGCGTAGAG 476
||||||||||| || ||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 423 CGAAGCCGGAGGAGATGAACTCCTTGGCCTTCCCTTGGAGTCTCAGCAGCCGGCGTAGAG 482
Query 477 ACTTGATTGCTCTTTGTTTCTTTTGGTAAAGCTGTCttttttttGCTCTGCTTCTGTTTG 536
| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 483 AAT-GATTGCTCTTTGTTTCTTTTGGTAAAGCCGTCTTTTTTTTGCTCTGCTTCTGTTTG 541
Query 537 TTTGTTGTGTATCCCCCCGAACCTGTGTAATTTATGGAATGCTTTTGTGATTTCATTGCT 596
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 542 TTTGTTGTGTATCCCG--GAACCAGTGTAATTTATGGAATGCTTTTGTGATTTCATTGCT 599
Query 597 TATGCCAT 604
||||||||
Sbjct 600 TATGCCAT 607
> AT1G79840.2 | Symbols: GL2 | HD-ZIP IV family of homeobox-leucine
zipper protein with lipid-binding START domain | chr1:30036956-30041440
FORWARD LENGTH=2895
Length=2895
Score = 152 bits (82), Expect = 3e-36
Identities = 91/95 (96%), Gaps = 2/95 (2%)
Strand=Plus/Minus
Query 510 GTCttttttttGCTCTGCTTCTGTTTGTTTGTTGTGTATCCCCCCGAACCTGTGTAATTT 569
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2893 GTCTTTTTTTTGCTCTGCTTCTGTTTGTTTGTTGTGTATCCCG--GAACCAGTGTAATTT 2836
Query 570 ATGGAATGCTTTTGTGATTTCATTGCTTATGCCAT 604
|||||||||||||||||||||||||||||||||||
Sbjct 2835 ATGGAATGCTTTTGTGATTTCATTGCTTATGCCAT 2801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29085571113
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5